Difference between revisions of "Os01g0148400"

From RiceWiki
Jump to: navigation, search
(Created page with "{{JaponicaGene| GeneName = Os01g0148400| Description = Brix domain containing protein| Version = NM_001048555.1 GI:115434523 GeneID:4325215| Length = 5212 bp| Definition ...")
 
Line 1: Line 1:
 +
Please input one-sentence summary here.
 +
 +
==Annotated Information==
 +
===Function===
 +
Please input function information here.
 +
 +
===Expression===
 +
Please input expression information here.
 +
 +
===Evolution===
 +
Please input evolution information here.
 +
 +
You can also add sub-section(s) at will.
 +
 +
==Labs working on this gene==
 +
Please input related labs here.
 +
 +
==References==
 +
Please input cited references here.
 +
 +
==Structured Information==
 
{{JaponicaGene|
 
{{JaponicaGene|
 
GeneName = Os01g0148400|
 
GeneName = Os01g0148400|

Revision as of 18:44, 22 July 2012

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os01g0148400

Description

Brix domain containing protein

Version

NM_001048555.1 GI:115434523 GeneID:4325215

Length

5212 bp

Definition

Oryza sativa Japonica Group Os01g0148400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:2631618..2636829

Sequence Coding Region

2631637..2631882,2632715..2632788,2632874..2633006,2633091..2633172,2633471..2633580
,2633659..2633751,2633854..2633904,2634013..2634105,2635257..2636129
,2636204..2636316,2636436..2636448

Expression

GEO Profiles:Os01g0148400

Genome Context

<gbrowseImage1> name=NC_008394:2631618..2636829 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:2631618..2636829 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggacggcggcggcgggggcgatccgggcggccgggtcggagaggccaaggcggatgccacacgcgctgcgaacaagcgaagggccccatcgccagccgggggtgggggagtcgaggccaagaggaggaggaaggacgccatgggctcgtcggtctccggcagcagatctggtggcggtgggggcaggaggctgcgacatggtcgaggtagaagagctcgtgccttcagacgcaagcttgaggaggaaaataagaattcaaataatagaccccgtgcctcaaatgtggttattgcttatacgcctaacctcattcggcggtatgggactctcttgagaaacatctcatttctgcttccttatgatggtcaaggaaaggcatatgcttgtccttcggacaaaatcaatgtgtttcttaaatggagcagatgcaacttttgtctcttctttgagtgggcagaaggtgatcagatgatgatttgtcatatgttcaatacattgaaagagattcacatatcgtttcttataaatccagcattcctagatgaaagtatggaagtgaaagtaacaaatcctttactttcattttcatccaattttgttgaagatgaaacttgggctcttgtgaaggagatgctaatgatgatgttttctccagttcaagaagatgagcgtgcagcttcagatctatatgtcttcacaaagagtagagattctgtttacttcaggattttcaagatcactagtatccctgcaggcgagagtgaaaattcactggttcttgatgaggttgggctaaatttttgcctcaagcttttagatgtccacggtgcttttgttggctcagactgtgatcaagctctggatggtcttcaaagtcagacaagaaatgagttgaaattatccccagatatatattactgtgtgccaaatgataaacttggatgctgcactctccactcagttgctttgaataatcagaactatttattttttttggagaatggcttggatttatcacattttgaaggtttctgtttgactttggaagaatttctcgagaggaattcttttctgaagataaagcatattgttgggtcaaggaatgatgaggaatgtaattttgttcgaaatattgctaaggcaattattcgttccatgctgtcacaccttgttaacttgttctctttggggaaatgtttgaggatgggaacagaccttctgagaaggaggaaaattcttttaaaaggatctgatgtcaagttctttcaacttgaagtgattgcatatgaggaggatgaagcaataaataatgtgctgcaggttgttgagttggttaaaagttgttttgttggggaaatgataccggctgatctgcaaggtgatctacatgatttaaaggaaaatcctttgaagagacttgaatcagtgatagacagcagctcattaatgtcagctaaagagaagaaaggattattggtcaatttgcacactgaatataaaaccaatattagtccagctattagcgaagatgatcgtgatagtttatttaagcacatcccgtatttggactgctggatgaacagaacggaagacaatgagtatctaaagctcgttgctaatttggattcaaaaaaagtggctttgaaagttaacaaggttggaacggataagagaaaaccatctaaaaatggtatcttacagtttgattttatgaggaattccgatgttcatatacctgaaaaggcattaaaggatggtatcaccccctttcgtttgtcatggacagattatattttaacttcccgctacccaacgtacttgcgtgccattcaaaaaagtttggaaccatacatgaagtcaagaaagaagttaaaatga</cdnaseq>

Protein Sequence

<aaseq>MDGGGGGDPGGRVGEAKADATRAANKRRAPSPAGGGGVEAKRRR KDAMGSSVSGSRSGGGGGRRLRHGRGRRARAFRRKLEEENKNSNNRPRASNVVIAYTP NLIRRYGTLLRNISFLLPYDGQGKAYACPSDKINVFLKWSRCNFCLFFEWAEGDQMMI CHMFNTLKEIHISFLINPAFLDESMEVKVTNPLLSFSSNFVEDETWALVKEMLMMMFS PVQEDERAASDLYVFTKSRDSVYFRIFKITSIPAGESENSLVLDEVGLNFCLKLLDVH GAFVGSDCDQALDGLQSQTRNELKLSPDIYYCVPNDKLGCCTLHSVALNNQNYLFFLE NGLDLSHFEGFCLTLEEFLERNSFLKIKHIVGSRNDEECNFVRNIAKAIIRSMLSHLV NLFSLGKCLRMGTDLLRRRKILLKGSDVKFFQLEVIAYEEDEAINNVLQVVELVKSCF VGEMIPADLQGDLHDLKENPLKRLESVIDSSSLMSAKEKKGLLVNLHTEYKTNISPAI SEDDRDSLFKHIPYLDCWMNRTEDNEYLKLVANLDSKKVALKVNKVGTDKRKPSKNGI LQFDFMRNSDVHIPEKALKDGITPFRLSWTDYILTSRYPTYLRAIQKSLEPYMKSRKK LK</aaseq>

Gene Sequence

<dnaseqindica>20..265#1098..1171#1257..1389#1474..1555#1854..1963#2042..2134#2237..2287#2396..2488#3640..4512#4587..4699#4819..4831#ggcggggcggggcgccgacatggacggcggcggcgggggcgatccgggcggccgggtcggagaggccaaggcggatgccacacgcgctgcgaacaagcgaagggccccatcgccagccgggggtgggggagtcgaggccaagaggaggaggaaggacgccatgggctcgtcggtctccggcagcagatctggtggcggtgggggcaggaggctgcgacatggtcgaggtagaagagctcgtgccttcagacgcaagcttgaggaggtaattcctgtcacggcccgagctcgaaatggatgcacatattcagacttctcacataatattcagaaaactcagattggacatggataaatttagggatctagggttctattgttaggaataaacttgggcgcgtgaatgaattggtcgtgcgccgttgggttcgacgtgcgcgaacgggagcgccgctacgggatcgtacacatagcgtccacattctctgttttgcaagaaaggaaaaaaaaaagaaggaaagaatgcagaaaacgctgcaagttttatacgaaagcaccaaaacacgtgtgctcatcgttttgtcgattcttctctctctcgcacgtgtttgctacatcctctgttgcagctaacaagtggtataagggtgaggctacacccctggcatgatgtcactccccataagagctgaagacctatgcaaccggtggctctccgtcttgcccctaccttgccacgtgcgccggagtaagggaggtcatcgtcgatcgcctgatcaagtggagctcaggttctgtcgtctaccccacgttgacaaggaccaactacactgagtggtacatggtgatgcgtgttatcctgcaggcgcaaggattgtgggaggcaacctgctggctaagggatgacttgaccctatgacttgtagtctaagacttgactccctaaggaaactgattccctaaggaaaagactttattgactgcagcagcaaggattatactactacctcgaacttttctgtatttgaattcattgcagtacttcattgcagactttgttggcacatttctctgaacttttctgtacttcattgcaggaaaataagaattcaaataatagaccccgtgcctcaaatgtggttattgcttatacgcctaacctcattcggcggtaaattctttcggaacacatacacacaaatatatatgtatgaaatgcaattttagttgatatctaaaatgatatttgttaataggtatgggactctcttgagaaacatctcatttctgcttccttatgatggtcaaggaaaggcatatgcttgtccttcggacaaaatcaatgtgtttcttaaatggagcagatgcaacttttgtctcttctttgaggtataatgaataatctgctttttttttacacgcataacattattttcattcatttaaggtaatctttttttttccttatgtcagtgggcagaaggtgatcagatgatgatttgtcatatgttcaatacattgaaagagattcacatatcgtttcttataaatccaggtaatttcaatgttttttacaattttaaataagagtaaaattttcaaaacccttgttttggggttttcttaacgcaaaatcctaggttttataatttgtttcaaagaacggtagattttgttacaaaatgtttcatgaaaccagggcagatttggataaaaccaattttctggatctgccactgcataaaacccagatacacttatataatccgattggcaacagtaattaattataatattgataactatgatgatttctacatgatgatattgataacaattaaaatttcttgcagcattcctagatgaaagtatggaagtgaaagtaacaaatcctttactttcattttcatccaattttgttgaagatgaaacttgggctcttgtgaaggagatgctaatgatggtaagaactcattttattcaattttttggttcagtttttagcgtgtatataaatgccatatctgatattgttaaacagatgttttctccagttcaagaagatgagcgtgcagcttcagatctatatgtcttcacaaagagtagagattctgtttacttcaggattttcaaggtattcaactaacttatttgttaagaagttgctggttattttcaataaatttcataattcatgtataatcttgtcctgagattttttttttgtattacccagatcactagtatccctgcaggcgagagtgaaaattcactggttcttgatgaggtataaacttctcgtccattcctgatcttgattagtttattgattcatccctaaacataaagcatgtgtggtccattcctaaacttagaacatgtgaactgcttttaggttgggctaaatttttgcctcaagcttttagatgtccacggtgcttttgttggctcagactgtgatcaagctctggatggtcttcaaagtcaggtaactgttaatttcttatgcattaaatgaatgattgtcccggtacttaaaaatggatggtacctagcatggcgtagtggattgacatgtcaacatattgttgtaaaaactataaattgtttattgttgtaaaatcagacagtaagggactgagtttacctgataatttctcaagactgagggagggaaggatagatgatagtagtagaggataataacaatgggtactgtctgcttgcctactcaaccatgacttctcgcattaatgatcaattgagcataggaattacaagaatcttatagagaggcagagaggataaatgggattaaccatggatggtgtcagtttctattttacaattgcacttagtgaaggaaaagaaatggttgtgagtcgagtcacatgagtgtagttgacgggggtagtagagtgtggagtctgctggctgggcctagccgtaaatatgggcctaatttatgtgcgtatacagatgctgaacttattatcgaacggttgatgtggctgcatcagaaggctgctttatggccataatttcctacataggttatacttgtataggaatgtaggaattaggataggatatagaatgcagtaacaaccaatatgtgccagtccactgtatcttatttctgttcaatcgtggcttctatctcatttgttagagagttaaggagtattctgaatcacctgtttggattgcacatttcaattcctagtcctatggtcacaatactttacctgatcattggtggcagtgcatagttgcacttctatttatatttcccagtacgataagtgcattgacacagcaatagttaacataaaaacaatttagcgataaattgtggtctatcatgcatctgcaccatggagattctctgaatttagagaaaatttaagtccttttgtaggatatctgaataatactagcaatacaaattataatatacatttaatttttttttcgtcttgaacacaaatttaaacacggttattcataaaataggtatatcctgtttctttatcgttatattttgttttggcattaaagcattgatgttagttgcatttatggcatttattttttattcttaatataaactaacaatatatggaattgtattttcagacaagaaatgagttgaaattatccccagatatatattactgtgtgccaaatgataaacttggatgctgcactctccactcagttgctttgaataatcagaactatttattttttttggagaatggcttggatttatcacattttgaaggtttctgtttgactttggaagaatttctcgagaggaattcttttctgaagataaagcatattgttgggtcaaggaatgatgaggaatgtaattttgttcgaaatattgctaaggcaattattcgttccatgctgtcacaccttgttaacttgttctctttggggaaatgtttgaggatgggaacagaccttctgagaaggaggaaaattcttttaaaaggatctgatgtcaagttctttcaacttgaagtgattgcatatgaggaggatgaagcaataaataatgtgctgcaggttgttgagttggttaaaagttgttttgttggggaaatgataccggctgatctgcaaggtgatctacatgatttaaaggaaaatcctttgaagagacttgaatcagtgatagacagcagctcattaatgtcagctaaagagaagaaaggattattggtcaatttgcacactgaatataaaaccaatattagtccagctattagcgaagatgatcgtgatagtttatttaagcacatcccgtatttggactgctggatgaacagaacggaagacaatgagtatctaaagctcgttgctaatttggattcaaaaaaagtggctttgaaagttaacaaggttggaacggataagagaaaaccatctaaaaatggtatcttacagtttgattttatgaggaattccgatgttcatatacctgaaaaggcattaaaggtaaaaggatagaatttgatactcttttatgtgttataatatcttcctattctaattatatctactctctgcaggatggtatcaccccctttcgtttgtcatggacagattatattttaacttcccgctacccaacgtacttgcgtgccattcaaaaaagtttggaaccatacatgaagtcaagaaagtaagttttgtctttacacttccgtttctggtattaaatatttgatgatatcaacagttctattgctttctatcccgcaaatgccaatctctgaattatcctttccttgtttggttcaggaagttaaaatgatgttacctcacacacaaagagggcgggctggattttcattggaacacaatgtggttgatttgatggagaaactggggttggctatacatccgctgggagtaggaccgattgattttctcatacatctgctattcatgacaacttggattggctgaatagcatttttgttgagcatgcctgaaaatctgtgcagacatctgttaatgtttttatttgtttgaactcgtggtagctttgtgcggaatcacgttttggttgaacttgcctgacaatatgtgttcagaacagccgcacagcacaggtgtagtttgctcgatgtgttcggaatatgtggtttatctcagttcgtgacagcttcgtgctaatcacgtttagttgagt</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0148400, RefSeq:Os01g0148400