Difference between revisions of "Os01g0939300"

From RiceWiki
Jump to: navigation, search
(Created page with "{{JaponicaGene| GeneName = Os01g0939300| Description = BRCT domain containing protein| Version = NM_001051882.1 GI:115442134 GeneID:4326509| Length = 4733 bp| Definition ...")
 
Line 1: Line 1:
 +
Please input one-sentence summary here.
 +
 +
==Annotated Information==
 +
===Function===
 +
Please input function information here.
 +
 +
===Expression===
 +
Please input expression information here.
 +
 +
===Evolution===
 +
Please input evolution information here.
 +
 +
You can also add sub-section(s) at will.
 +
 +
==Labs working on this gene==
 +
Please input related labs here.
 +
 +
==References==
 +
Please input cited references here.
 +
 +
==Structured Information==
 
{{JaponicaGene|
 
{{JaponicaGene|
 
GeneName = Os01g0939300|
 
GeneName = Os01g0939300|

Revision as of 19:05, 22 July 2012

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os01g0939300

Description

BRCT domain containing protein

Version

NM_001051882.1 GI:115442134 GeneID:4326509

Length

4733 bp

Definition

Oryza sativa Japonica Group Os01g0939300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:43025701..43030433

Sequence Coding Region

43025944..43025965,43026075..43026141,43026228..43026336,43026919..43026999,43027159..43027428
,43027523..43028989

Expression

GEO Profiles:Os01g0939300

Genome Context

<gbrowseImage1> name=NC_008394:43025701..43030433 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:43025701..43030433 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcacatgatgacttctgcaagcggatgtgcaaagttggattaccttagttcgcaggagcctggtgatgaatcacagatcaacgctattgacattgtggataggctgctagtagaagatgatatagaaacttatcagcaaataagcatcgaccagacaacgagggcaaagtcagcttctactttaggttcagatatagctcaatgcctggccaaaagggctaggtgcagttccccactaaaaaaggctggaaattttgactgggttgatacccccactgttgatgattgcagaaccagtattatttccatggaaaatacagtagatcgtgctaataatcaagtgaaacacggtggctgtggatcaagtaccagggcttggcccatactagaatgcattgatgaggacttgggtactaattgtctgaagaaaacggaaccattttgtggtactgatgatttataccaagaatatgatattgggccaaatactcagatggcagctgaagccatggaagcattgttcaatgcttcaactgtcagttatgatgtcaaggagaatgaacgtcctgaagattctgttgttaaaaatatgacaaaaggaaccaaagttgataagacatgtgcagttcattcaccaattcaaaagagaaaggtaaacttcttgcgtcacagatcaggagtggcaacagaatacaagcaaatcaaggtagatgatacagtaagggaaaatggtgaaagttcagtctctcatacaaacacatcacaaaccaggaagtatacgaaacagatggcagggaaagcaaaaagaaacatcagcagtgggattactcaaagagacatagatcatgaggtgtcagaagtaatcacaagatctggtacaaatgactcaaatattcctctttcactagatacagatgctttaatccatcctaaaaggaggaggacatatatatttacctcgggaagctcaaaaattgagttcattgaagctatcaagccaacggcacttagagccaaaactacagaagtaaaacagctttcaacagctaacacagtaagcgtatctgatcaagataccacaagtggcttgagaatgagtcaacattcttcttttgctgatcatgaagcatcagcaggtagttcatacttcaatccacttgcagaaacttttactgtagggcttgaaaaacagtcaatacctgagaagaagggtcatgactctagtttgatgcccagtgtaccgctgagagagctaaatggtgcagggccccaagctaggacacgtacatcagaaacaccgaagagagtcctgaaatcaccaggttccagagaacttgctaacctctttagaaatgaagtatctccagtattgcaatctagcaggcgaaggagaaagcatatgtccacagtccgtgtactacttagccaaagtatgggcaatgaaaccctcaacgatcaaacaaagattttgatacattttggattatcagtggcaacaactatttcagaggctacacactttgttgctgaaaagtttgcgcgcacaaggaacatgctagaggcaatagctacgggcatacctgtagtcacaccggcatggcttgaatgctgcagggaagctaggagtttcattgatgagaaaagatacattctgagggatataaagaaggaaaaggagctaggctttagcatgcctgtctcactaagccgagcttgcaaaaaacctttgttagagggtagaagagtgctaatcacaccaaatgctaaacctagcaaggagcttttgaaaagtttagtagtgactgctcatggcaaggtgttggagagaaacgcaatgtccaagatgaagaatagaagtttaatgggagcttttgtaatctcttgtgaacaagactacaaaatatgcgtgccattcattaagaacggttttgaggtgtttgaatcagagcttgtgcttaatggtattgtcacccagaagctagaatttgaaaggtatcgtcttttttcaggataa</cdnaseq>

Protein Sequence

<aaseq>MHMMTSASGCAKLDYLSSQEPGDESQINAIDIVDRLLVEDDIET YQQISIDQTTRAKSASTLGSDIAQCLAKRARCSSPLKKAGNFDWVDTPTVDDCRTSII SMENTVDRANNQVKHGGCGSSTRAWPILECIDEDLGTNCLKKTEPFCGTDDLYQEYDI GPNTQMAAEAMEALFNASTVSYDVKENERPEDSVVKNMTKGTKVDKTCAVHSPIQKRK VNFLRHRSGVATEYKQIKVDDTVRENGESSVSHTNTSQTRKYTKQMAGKAKRNISSGI TQRDIDHEVSEVITRSGTNDSNIPLSLDTDALIHPKRRRTYIFTSGSSKIEFIEAIKP TALRAKTTEVKQLSTANTVSVSDQDTTSGLRMSQHSSFADHEASAGSSYFNPLAETFT VGLEKQSIPEKKGHDSSLMPSVPLRELNGAGPQARTRTSETPKRVLKSPGSRELANLF RNEVSPVLQSSRRRRKHMSTVRVLLSQSMGNETLNDQTKILIHFGLSVATTISEATHF VAEKFARTRNMLEAIATGIPVVTPAWLECCREARSFIDEKRYILRDIKKEKELGFSMP VSLSRACKKPLLEGRRVLITPNAKPSKELLKSLVVTAHGKVLERNAMSKMKNRSLMGA FVISCEQDYKICVPFIKNGFEVFESELVLNGIVTQKLEFERYRLFSG</aaseq>

Gene Sequence

<dnaseqindica>4469..4490#4293..4359#4098..4206#3435..3515#3006..3275#1445..2911#ctctctctctcatccgttccccaatccatccaggagttcatggcggatcaatggcgaagcgaaggagctaaaccctagagctctccagcgcctcgttcacctatccaaaactaaaggtggcatccccttctcaggtaattttcccatcccttaatcggatcatcgtgttttagttacttttcacgcgatgccttttggtaacaccgaatcgcgcgtttctcgagtcgattttttcggttcttagtgttgaacgcgccgatcgatcggtggcaggcccgttggattcgatcgttctcgaattcgtcgcacccgtttgtgtctagtagatgtattctcacctttcttcgcagtatatttattgttcaatggcacggcaatgatcaatttgtgataagatccccttgacggatcatttgctgccacagcatgctagtagtagataatctgatggatcatttggagagatggatttgaatagtgaagtggagtttagtgttcttgttcattgagaagaacagcctgcgtttattgctatatactcctattctaaaataaaaattgctatatactagtattcgtcagtcgtctgttacatatttgactgggtgataaccaaatttatcataaaatccatttttccaatagcaataagcatatgcattacttctgcgaatacactgtctgatatgaatcagaatccaacatttttttttggctctttctagttggtacgaaccccacatcaactgtaatactaaaaaccgaccataaatcttgctgcctctctcgctctcgcccgcgtttagcttgcaaccactgaccgccggtgccgcatctaatcaactgctgtcactacctgcatctggagatctttccattcatgagctcgacggcggttgccccctctgttggtgagctaggcggcagccccctcccttcactagctgtctagctcaatgcctggtcacaccaccacccgcgccaagaagattttggattttgcaattttttcttaattttccgtttatttttgtaaggcagggatttttgttggctctttttattccaaacaattgggtggaatttcccaaggggatcccgtgacacccaaaaggtccctcctgtggatgttcttccctgttttttttcacccctagctctcaaacaagcccataaacgttgtttattttacttatgatcatacacttctgtcttccgtgtgcataaatattttggtatgtgtatcttgatttagaaactgtagcatcttaaaatatgttcctctcatatacacagttcagtctgagaagattccagctcttggtttcaagtattgtctactcagcatttaggccatgatcgatcaactccatgttgttaacaccattcacagttagcctacaagttcataacaggtgttttctgtctatttcagtattacagcatgcacatgatgacttctgcaagcggatgtgcaaagttggattaccttagttcgcaggagcctggtgatgaatcacagatcaacgctattgacattgtggataggctgctagtagaagatgatatagaaacttatcagcaaataagcatcgaccagacaacgagggcaaagtcagcttctactttaggttcagatatagctcaatgcctggccaaaagggctaggtgcagttccccactaaaaaaggctggaaattttgactgggttgatacccccactgttgatgattgcagaaccagtattatttccatggaaaatacagtagatcgtgctaataatcaagtgaaacacggtggctgtggatcaagtaccagggcttggcccatactagaatgcattgatgaggacttgggtactaattgtctgaagaaaacggaaccattttgtggtactgatgatttataccaagaatatgatattgggccaaatactcagatggcagctgaagccatggaagcattgttcaatgcttcaactgtcagttatgatgtcaaggagaatgaacgtcctgaagattctgttgttaaaaatatgacaaaaggaaccaaagttgataagacatgtgcagttcattcaccaattcaaaagagaaaggtaaacttcttgcgtcacagatcaggagtggcaacagaatacaagcaaatcaaggtagatgatacagtaagggaaaatggtgaaagttcagtctctcatacaaacacatcacaaaccaggaagtatacgaaacagatggcagggaaagcaaaaagaaacatcagcagtgggattactcaaagagacatagatcatgaggtgtcagaagtaatcacaagatctggtacaaatgactcaaatattcctctttcactagatacagatgctttaatccatcctaaaaggaggaggacatatatatttacctcgggaagctcaaaaattgagttcattgaagctatcaagccaacggcacttagagccaaaactacagaagtaaaacagctttcaacagctaacacagtaagcgtatctgatcaagataccacaagtggcttgagaatgagtcaacattcttcttttgctgatcatgaagcatcagcaggtagttcatacttcaatccacttgcagaaacttttactgtagggcttgaaaaacagtcaatacctgagaagaagggtcatgactctagtttgatgcccagtgtaccgctgagagagctaaatggtgcagggccccaagctaggacacgtacatcagaaacaccgaagagagtcctgaaatcaccaggttccagagaacttgctaacctctttagaaatgaagtatctccagtattgcaatctagcaggcgaaggagaaagcatatgtccacagtccgtgtactacttagccaaagtatgggcaatgaaaccctcaacgatcaaacaaaggtaccatccatttcttaattgcacaaactacacagagtaatgaaaggtctctcaatggttctcacctcttaaaactctatttggccattggcagattttgatacattttggattatcagtggcaacaactatttcagaggctacacactttgttgctgaaaagtttgcgcgcacaaggaacatgctagaggcaatagctacgggcatacctgtagtcacaccggcatggcttgaatgctgcagggaagctaggagtttcattgatgagaaaagatacattctgagggatataaagaaggaaaaggagctaggctttagcatgcctgtctcactaagccgagcttgcaaaaaacctttgttagaggtgatattttagtttattagcttgaaaaatataatcaaaatgagaacaaatactagcaatttttggcaattatattatcttgatgccaagagatactttaacttcagtatgccaaaatatgaaatgtttatgttacctaaaaatttattgaatttccagggtagaagagtgctaatcacaccaaatgctaaacctagcaaggagcttttgaaaagtttagtagtgactgctcatggcaaggtatacgcttgttatatacctctgttcaaatcaatctgaattttcttttggagcactttccttgtctttggtaatctaccctttgttgcattcatttattctgtgttgtcatctcaactatctccagattttagatggtacttgtttctgcaacagtatgaactttccagctgcttagaagttaatgcacataaaggacttcaattcttcacattgttatgtaaagtgcacaaaaatctggaggcattgtgtttgtgatgcaacaacaaatacgagtaggatcaacgtggattaccatcaatctggaacattttctagtgacctgtgttttttacaatggagatttctagtgacatgtgtttaattcaattttgttgttgccaatattactgatttggtttcaagatatagctaaaaggtgtgatgaaagttatcaaatgatttgtggttcgtttttaattgcattttctctgttaagaacactacttcattacatgccaatatgttaggatcccatacttggatacataatttccatttcttaaattgcttgcacaacgattacatttgttggtttgccaggtgttggagagaaacgcaatgtccaagatgaagaatagaagtttaatgggagcttttgtaatctcttgtgaacaagactacaaaatatgcgtgccattcattaagaacggtgtgtgctacgctccctgtacctaataaagttctggggcttactccatttgtcgtaaaccgctggttgatgttgcaccgttgcaggttttgaggtgtttgaatcagagcttgtgcttaatggtattgtcacccagaagctagaatttgaaaggtacgctctttctcgtcagattgtagcgttatcatttccaatggaatgaacatcaagccatgcctgataactcaactcccaactggtggccgtggcttctatcttgcaggtatcgtcttttttcaggataaaaccgtgtgaagtgtccgcgagtcttgataaattaggtactatgcaacaaagcgtattattgtacataaatccttattatattcctctagttactcgtattcgtatgtttcctcgcaaatttgcgaacgcttgttgcaagtatttatccctgcagcctcttcttggcatgactatttctgtgggtagacaccaagctcttgtgtgaagaagaatgatgatgtcattaacatggttactcattt</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0939300, RefSeq:Os01g0939300