Difference between revisions of "Os08g0178100"
(Created page with "{{JaponicaGene|
GeneName = Os08g0178100|
Description = Pep3/Vps18/deep orange domain containing protein|
Version = NM_001067661.1 GI:115475058 GeneID:4344807|
Length = 971...") |
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| Line 1: | Line 1: | ||
| + | Please input one-sentence summary here. | ||
| + | |||
| + | ==Annotated Information== | ||
| + | ===Function=== | ||
| + | Please input function information here. | ||
| + | |||
| + | ===Expression=== | ||
| + | Please input expression information here. | ||
| + | |||
| + | ===Evolution=== | ||
| + | Please input evolution information here. | ||
| + | |||
| + | You can also add sub-section(s) at will. | ||
| + | |||
| + | ==Labs working on this gene== | ||
| + | Please input related labs here. | ||
| + | |||
| + | ==References== | ||
| + | Please input cited references here. | ||
| + | |||
| + | ==Structured Information== | ||
{{JaponicaGene| | {{JaponicaGene| | ||
GeneName = Os08g0178100| | GeneName = Os08g0178100| | ||
Revision as of 20:45, 22 July 2012
Please input one-sentence summary here.
Contents
Annotated Information
Function
Please input function information here.
Expression
Please input expression information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this gene
Please input related labs here.
References
Please input cited references here.
Structured Information
| Gene Name |
Os08g0178100 |
|---|---|
| Description |
Pep3/Vps18/deep orange domain containing protein |
| Version |
NM_001067661.1 GI:115475058 GeneID:4344807 |
| Length |
9718 bp |
| Definition |
Oryza sativa Japonica Group Os08g0178100, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 8:4570025..4579742 |
| Sequence Coding Region |
4570089..4570271,4570355..4570568,4570684..4570823,4570929..4571024,4571426..4571493 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008401:4570025..4579742 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008401:4570025..4579742 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggacgccgccgccgccgccttcgcccccggcgggcagctcttctccgtcgatcccctcgagcggcacgcggcgaggggccatggcgtggtcacctccatggctgccggcagcgacgtcatcgtcctcggcacctcccgcggatggctcgtccgccacgacttctccttcgaggacgcccatgatctcgacctcgggaccggccgctccggcgagcactccgtgcaccgcgtcttcctcgaccccggcgggaagcactgcgtcgccacggtggtccacccggggggcgccgagacgtactaccaccacgccaggtggccgcgccccaagctgctcccccgcctccgcaacgtcctcgtcaatgccgtcgcgtggaaccgccaaaccatcaccgaagcgtcgaccaaggaggtgatcctggggacagaggatgggcagatcttcgagattgcagtagacgaggccgacaagaaggagaagtatgtgaagtcgctctttacgctctctgagctgcaggagggcatcaagggcctgcagatggaaaccgccgtggttgggaacgccacaaggttctatgtgatggctgtcacaccaacacggttgtactcattcacgggcatcggttcattagaaactgtttttgctagctattctgatcgtgcgatacactttatggagctcccaggagatattccaaatagtgaattacatttctttatcaagcaaagaagggctaagcattttggatggctttctggagctggaatttaccatggtgaactgaattttggagctcaacacagctctacaagtggggatgagaactttgtcgaaaataaaggtttttttgactactcaaaattgggagaatctggtatcaagccaaggtcatttgcattgtctgaattccattttctgcttctcatcagggacaagattaaggtagtgaacagaatcagccagcaaatagtggaggaacttatagtcgatagttcaccagaagttacaaaaggaataattggactttgtagtgatgcatcaactgggcttttctatgcatacgatgaaaattctatattccagatttcatcatctgatgagggtcgtgatatgtggcaagtatacctggacatgaaagaatatgctacggcactgtcacattgtcgtaactccttccagagggaccaagtctatctagtgcaggctgatactgcattcaatacaaaagagtactatatagcagcttccttctatgcaaagatgaattatatcctatcatttgaggagatcagcttaaaatttatatctgttggtgagcaggatgctctcaggactttcttgttgagaaggcttgataacctaacgaaagatgacagaatgcagattacaatgatctcaacttgggctactgagctgtacttggacaagattaatcgcctcctgttggaagatggcacaggagccacgtcaaatgctgtagcagattctaaagactcggaatatcgttcaatagtaaatgaattccgtgcttttctaagtgatagcaaagatgtattagatgaggcaacaacaatgagactgttggaaagttatgggagagtggatgagctggtttattttgctggtttaaaggagcaacatgaaattgtggttcatcattacattcagcaaggagaagcaagaaaggcattggaagttcttcagcgacataatgttctagtagaccttgtgtataaatttgctccagatttaatcatgttagatgcttatgaaactgttgaatcatggatgatggcaagaaataagttgaatccagggaagcttataccggcaatgatgcgttatgtgagcgaaccacatgccaagaatgaaacacatgaagttatcaagtacttggaattctgtgtaaaagatttgaacaatgaggatcctggagtgcataatttgttgctctcactgtatgccaagaaggacgatgagtctcagcttttgcaattcttggacactaagtttggtaaaggacagacaaatggccctgagttcttttacgaccccaaatatgctctgcgtctatgtcttcaagagaagagaatgcgtgcttgtgttcgtatttacagcatgatgtccatgcatgaagaagctgttgcacttgcattaacggtggacttagagcttgcaaaagcagaagcagataaagttgaagatgatgaagaacttagaaagaagctgtggcttaaggttgcaaagcatgtcattgagcaagagaagggagtcaagagggagaacataaagaaagctatagaattcctatcagagactaacaacttgttgaagattgaggatatcctgccatttttcccagacttcgtattgatcgatgactttaaagaggaaatatgcaaatctctcaaggactatgacagccaaatcgatcagctgaaacaggagatggatgatgctactcgtggggcagacaacatcagaagtgatattggtgcccttgctcagagatacactgtaattgatcgtgaggaggaatgtggggtgtgcaagcgcaaaatattgactgctggaggactgcaccaggtaggaagaagctacacatctaccggacacatggcccccttttatgtgtttccttgtggacatgcctttcatgcgaattgtttgatcgcacatgtaactcgttgtaatagcagccaaacacaagctgaaaaaatactggacctccaaaagcggcttagcctaatggacaggaaagcagcaaaggaaaatggcggaaacatgaatggtgaatctattatcagtgcgacaccaattgacaagttgaggtcccagctggatgatgctgtagcgagcgagtgccccttctgcggcgatctgatgatcaaggagatttcattgcctttcattctccctgaagagtctgatgaaaaggcttcgtgggaaattaaaccgcaaccaacgggtcagaaaattcttccaatgaccatgtctatatga</cdnaseq> |
| Protein Sequence |
<aaseq>MDAAAAAFAPGGQLFSVDPLERHAARGHGVVTSMAAGSDVIVLG TSRGWLVRHDFSFEDAHDLDLGTGRSGEHSVHRVFLDPGGKHCVATVVHPGGAETYYH HARWPRPKLLPRLRNVLVNAVAWNRQTITEASTKEVILGTEDGQIFEIAVDEADKKEK YVKSLFTLSELQEGIKGLQMETAVVGNATRFYVMAVTPTRLYSFTGIGSLETVFASYS DRAIHFMELPGDIPNSELHFFIKQRRAKHFGWLSGAGIYHGELNFGAQHSSTSGDENF VENKGFFDYSKLGESGIKPRSFALSEFHFLLLIRDKIKVVNRISQQIVEELIVDSSPE VTKGIIGLCSDASTGLFYAYDENSIFQISSSDEGRDMWQVYLDMKEYATALSHCRNSF QRDQVYLVQADTAFNTKEYYIAASFYAKMNYILSFEEISLKFISVGEQDALRTFLLRR LDNLTKDDRMQITMISTWATELYLDKINRLLLEDGTGATSNAVADSKDSEYRSIVNEF RAFLSDSKDVLDEATTMRLLESYGRVDELVYFAGLKEQHEIVVHHYIQQGEARKALEV LQRHNVLVDLVYKFAPDLIMLDAYETVESWMMARNKLNPGKLIPAMMRYVSEPHAKNE THEVIKYLEFCVKDLNNEDPGVHNLLLSLYAKKDDESQLLQFLDTKFGKGQTNGPEFF YDPKYALRLCLQEKRMRACVRIYSMMSMHEEAVALALTVDLELAKAEADKVEDDEELR KKLWLKVAKHVIEQEKGVKRENIKKAIEFLSETNNLLKIEDILPFFPDFVLIDDFKEE ICKSLKDYDSQIDQLKQEMDDATRGADNIRSDIGALAQRYTVIDREEECGVCKRKILT AGGLHQVGRSYTSTGHMAPFYVFPCGHAFHANCLIAHVTRCNSSQTQAEKILDLQKRL SLMDRKAAKENGGNMNGESIISATPIDKLRSQLDDAVASECPFCGDLMIKEISLPFIL PEESDEKASWEIKPQPTGQKILPMTMSI</aaseq> |
| Gene Sequence |
<dnaseqindica>65..247#331..544#660..799#905..1000#1402..1469#1865..1966#2815..2953#3081..3221#3306..3425#3564..3620#3723..3782#4189..4296#5157..5317#5776..5854#6452..6514#6680..6813#7169..7274#7567..7755#7918..8145#8351..8506#8814..8978#9075..9191#9268..9444#aatcgcatcgcctccgacgagctcgcggcggccggccggcgaggcgactgcgactccgacgaccatggacgccgccgccgccgccttcgcccccggcgggcagctcttctccgtcgatcccctcgagcggcacgcggcgaggggccatggcgtggtcacctccatggctgccggcagcgacgtcatcgtcctcggcacctcccgcggatggctcgtccgccacgacttctccttcgaggacgcccatggcacgtcctcccctcctcgccctcgcagccgccatcttcgccgccgcctcgcgcttccgctgatcgctcctctgctgctgcagatctcgacctcgggaccggccgctccggcgagcactccgtgcaccgcgtcttcctcgaccccggcgggaagcactgcgtcgccacggtggtccacccggggggcgccgagacgtactaccaccacgccaggtggccgcgccccaagctgctcccccgcctccgcaacgtcctcgtcaatgccgtcgcgtggaaccgccaaaccatcaccgaaggtgagctaatactactgcatatactgttcctcgatcgaattgtgtctcgattccggcagtccgtgctgtgtatttgttcttgattgtggagttgtttgtggtttcggtgctgtagcgtcgaccaaggaggtgatcctggggacagaggatgggcagatcttcgagattgcagtagacgaggccgacaagaaggagaagtatgtgaagtcgctctttacgctctctgagctgcaggagggcatcaagggcctgcaggttcgagtttgttgccagaggccatcgagggctgcggttctgtacttgtgttgtgttggtgttatttggttggaatgagcgtgatggaggaatttggttgtgcagatggaaaccgccgtggttgggaacgccacaaggttctatgtgatggctgtcacaccaacacggttgtactcattcacgggcatcggttcattagaagtaagtacaattgctcaattttatcagctccaaatttcggagacatacaccattatagaatgtaatgggagcaatctagatcgaatttagtgaaaagaaagacccagatttttcacttcggatatcaaagtcctcatggacggtgtttcttgatttaataacgtgactcagtaacctcgaaagtgctatactacgcgaagtcagtatgcctcttttcttacagagagatatgcgtgattagaacagcttgtgatgccttttgccattttagagagcagcattgcatgccaacagtttctatagaagattttctcttggtttccagaatttcagccctacaagatttatttgtttactcattttctcttgatgtaatatctaataacaactatattgcacagactgtttttgctagctattctgatcgtgcgatacactttatggagctcccaggagatattccaaataggtgagtataagggcaagtgctatggtagatgtgactaccacctccaaatttatctattttattcactcataaactaagaggcaatccatacaatgtatcacctctagtacacaaataccaatatatctaatactctcacatccttcttgaaatttgtgtggaggttgcctcttgatttaggggtggctcatcatctctctcctcacttctttccttcacatcatcactcaatccaatgtggcattcttaggggcaacatatgggtcattatagtacttgccctaactttatgtgatttatacagtactatacagtggtaactacagtttgtgccacccactagaatactttcttttagtgagcttatgacaatgtatccattgcatggaatccagtgaattacatttctttatcaagcaaagaagggctaagcattttggatggctttctggagctggaatttaccatggtgaactgaattttggagctcaacacaggtgaactgtagtttttggatttaagttgattccatcatgtaacatgtaactgaagtggattattaacttatgttttctttgttatctaatccaaatgtcattgaactgctaagctgctagcattctcttagtgggcatatttttctaatagactgagccttggtgtgccttttgaccttataagaaatgtggcaagtaatgtaatcccccactcctaaacataagttctttagggaaatgtaaagtagctactttggcctcaggaaaaacaataatagttttctcatcaagataatcaaattgtcatcttactaataatataaatataaagtgtggtagaatgatgatagtcatacaagaattaatgatcaatgttatgccttcaagaacttgatgtcaatcatgtcactggatattatctatgaacagaactataggactacatgagtaccttagaagattatatctaatgaatgttcagggttttatatattgcaaaccttatgcacttcaaacttgataattctctgctagctgtttgagcttctctttagagacatgcatgccaatctcactgagccaggtgttggcactggcacactgcatgtgtgcaccttcttacttaagtgtattttgatgattatatataaaagaactacttttacagttttatgaagttcggctccatgaactcttaggatctcaatatgacactgttttttctttcctttgggataacttgcagcacttcttttattagtttgtctcccattctataataataaccatataattacttttttctgtattttctatagtaatttgttaaactaaatttagttttgcagctctacaagtggggatgagaactttgtcgaaaataaaggtttttttgactactcaaaattgggagaatctggtatcaagccaaggtcatttgcattgtctgaattccattttctgcttctcatcagggacaagattaaggtacaattctttttaaaaaatctatactgttttcactgtgattcattttgctttctgtcactattttgtcttccctgttgttttatgtattcctttacaaagcaaaagcataacctgtgatttttaggtagtgaacagaatcagccagcaaatagtggaggaacttatagtcgatagttcaccagaagttacaaaaggaataattggactttgtagtgatgcatcaactgggcttttctatgcatacgatgaaaattctatattccaggttagagactatctgattcttgctttgatgtaataattgccttcagagtccagaattgtgttgctgatgaagctatatatttagatttcatcatctgatgagggtcgtgatatgtggcaagtatacctggacatgaaagaatatgctacggcactgtcacattgtcgtaactccttccagagggaccaagtctatctagtgcaggtgatgtttatttgcacttcgatcccatgcactacttttttctcctttattattttcccctctatgataagctggaccttttttgttttgtgatgatcaatgacttctgttattgtataaatatcttctcttttgtaggctgatactgcattcaatacaaaagagtactatatagcagcttccttctatgcaaaggttaaacccacactgtttaattctgttccttatttttttaaaaaaaaagattttgttgtcctgttcacgttgatactaaaaaatatattctcttggtttcagatgaattatatcctatcatttgaggagatcagcttaaaatttatatctgttggtgagcaggtagtttagtctgaacttctttttttcttttttctttttttttgtgaggagtctgaactttctaatatggtatattattgcatgtttgtgtaagatctatctttctaaaatactcatctgccatttgatattgtcaagagcttctctgagatatctttgcttattgatgtattcaattgttttttttttccctgatctttgtcactgatgcaaagttcaagtgttgctagttccaagattgataatttgaaatataatataatgccgttaacattgtgaaaacatagaggaaatgttctgtcatgctttggtacaatctaagattcattctagtgtaactatttacatgatacatgagaatattgtgattttatttatgaaataattatcttcctcaacttgacaggatgctctcaggactttcttgttgagaaggcttgataacctaacgaaagatgacagaatgcagattacaatgatctcaacttgggctactgagctgtacttggacaaggtaccaattgtttgtttttcaaccttctaaactaatataacagtcttcatgacaagaaggctggtgtcctattttcattgtttgtacgtatcctttttttcctgctcttaatacaaagatacacagtcctctgtattgttgagaaaaaggtaataccagggccggccctagggggggtcaggccgtgcggccacccgaggcccccaaaatctaggggccccctatgcacatacagtatatatactatgtattgtataattctagtccacgtgccatggatctatattaagttagatagctgaatagcctaatacagaaaatgaaatttagtccatcgttaggcctgttttaacgaagccgaagcaatcttcatttgactcctgtcgctttgccttgatcacatcacgccactcacgtcatgccgcctcgatcacgtcacgctgctcctgcgctctcggtgacttctcggcgtctcgcaaacgaaaacagcaagttggcaaatcgcgactcgccagtaaccacgctcgtgtcaatcgtccgccggtcgacttctctgctcgctactgctatttatttctcattggagttttaaaatgttatatatagataattttgtcacatcgaatattaaatggtatgtgtttatcagactatataaatatataaattagtttatgtatatatgtaggggcctccatataagtttttgccctgggcccccaaaaccccaggaccggccctgggtaatacaagatatgttccattgctattggaaatctttcttcagtcttggtttcagtatacttgtacttgtgattattgcgggggcttatccagtatatttggtgcaatatttgtagattaatcgcctcctgttggaagatggcacaggagccacgtcaaatgctgtagcagattctaaagactcggaatatcgttcaatagtaaatgaattccgtgcttttctaagtgatagcaaagatgtattagatgaggcaacaacaatgagactgttggaaaggtatgtggtaccattgttgcacaatatgcttcactggtattttaggttgtttaaattctcatatatgtattgtacaggtaacttacatatctttggatagaacctgcataattttaatattccatacattaatactatatttaaaattgttgaacatttgccaaacaaaggacctgatttaatgtccatttgctttaaactcagggctttgtgtacaaccagtaggatttgttctattaagaaggatatcatctttgagccttcaatagctcatttatttaaaaggggaaatgcagcaagactgcaaactgcatcaatggatagactataaaatatttcattatttagtttatgcaattctgttgacttgtcatgaataagatggcggtgtgttctctccatttgttgtgttgctgattatatgtgttccccaactggtaccttgaaaccttttgcagttatgggagagtggatgagctggtttattttgctggtttaaaggagcaacatgaaattgtggttcatcattacattcaggtcagtgtcaggcatttatcatctaaaggtgttaaatactaatttgtgtcgagcataacaatagtaaatagtataatctgccaagtgctagctagtattaacattatgtttgctaatatgtttgagcaagcaaagatatgcataccttgattatcggcctataatgggtgataagagcttgtttatgccacaaactaattgattattttatagaacagttcatgtaacatgtgctgggatggggcttgtgccagccagatatttcaggctaggctatgctttgagcaggctcaatgccagcatgatcttgcattcttaccatagtctaacatcaaatttcccttctatctgttctcttgagcaactgtagtttctatatcattcttctttgtagaatagttggaaaggaaacatttataatattactggagttcgttgcacatctttctttgaagccaattgcttcaaaatcattgcattcagttatcttgaaaatacaagttttttacttattatatgaggtaccttttgcacttggaacccattggcattagctgagatgtcaagtccttatgcattttctatttactttgtcagcaaggagaagcaagaaaggcattggaagttcttcagcgacataatgttctagtagaccttgtggtacataatggctttacatttattctttgaatgctgcagtatagaactcaaaataagtttattattgattctaccacaacaaggttacattttctgttttacacaaaattacacatttaatattttttaattctagccgttgctctttaacttgtttttgtgcagtataaatttgctccagatttaatcatgttagatgcttatgaaactgttgaatcatggatgatggcaagaaataagttgaatccagggaagcttataccggcaatgatgcgttatgtgagcgaaccacatgccaagtatgatatgctaatggcttcttatacgttcctattcccctattgctataatactatatgaatcctttaatattatgtgatatcttaacagttgacagccttaccgtcttttatcacaccagggaactctgaatgctatatataaaaacattgttactattgaaacgaattttgctactggtggaagtgaatttagatctgttacacttaaatcccatatcagatagtgataattcgaatcaaacctaagaatgcctaaactccctatgttcagaagctctggaacaaactgcaattctatgtagccaacttgatttccataatcaggatgatgtgatgaattcaactcttgcaggaatgaaacacatgaagttatcaagtacttggaattctgtgtaaaagatttgaacaatgaggatcctggagtgcataatttgttgctctcactgtatgccaagaaggtagctcttccagtagtgcattatttgttgctcttgctgtgtgtgaaattacactttatattcttacaaagtaggaaaaatatcatgtaattaattttgttgtgtatgtttcttttttatgtgttggaaacattaaactgtaatagcagtaattgcttactttgcactcaattcatcattcatgtttctggtggttcttatgaggttgtcaatgccataccagtcaagcgtatatttgtcaacacatataactaatgattttgtatgtgtactctggtttattcatgtgcaggacgatgagtctcagcttttgcaattcttggacactaagtttggtaaaggacagacaaatggccctgagttcttttacgaccccaaatatgctctgcgtctatgtcttcaagagaagagaatgcgtgcttgtgttcgtatttacagcatgatgtccatgcatgaagaagctgttgcacttgcattaacggtaaacctcattcctcactaagtctcatcatttctttaagagtctactaattccattcaataagcatcccttgcgctttcgcatattgatggtgtaggattttgaagtgttcttatttttatgaggctttcttattcctttactcaatttggtccttgctaggtggacttagagcttgcaaaagcagaagcagataaagttgaagatgatgaagaacttagaaagaagctgtggcttaaggttgcaaagcatgtcattgagcaagagaagggagtcaagagggagaacataaagaaagctatagaattcctatcagagactaacaacttgttgaagattgaggatatcctgccatttttcccagacttcgtattgatcgatgactttaaagtaagatataagtccaggcagtcagctgctttacagaaaaattcctcctaatgtccatttctctgttgaagatccacaactgcaattttcttattaacaaaaaagttatctgaatgaataaatttcgttgttaattattactagtccacattttctgcattacctcttttctcagcattaacagtgaaaaatattgtctaaacaggaggaaatatgcaaatctctcaaggactatgacagccaaatcgatcagctgaaacaggagatggatgatgctactcgtggggcagacaacatcagaagtgatattggtgcccttgctcagagatacactgtaattgatcgtgaggaggaatgtggggtaagaaactgctcacgatacccaaaatggtgtagtttaactaatgttgtgcctgttcttttctttatatggtgttacatgagtttccttgttttcgtttcaaataagtaaagatgcaaatatgcaacaaagaggaaagatgacccccacgctatattgtttaatatttgtgttcttggtattgcttgttttctcaagtacacttaaaattattttttccattttgattcagatggttttatgaacttatgtactaactgtcttcgctgctatatcatggtgttaactcctcactgtgcattaacaggtgtgcaagcgcaaaatattgactgctggaggactgcaccaggtaggaagaagctacacatctaccggacacatggcccccttttatgtgtttccttgtggacatgcctttcatgcgaattgtttgatcgcacatgtaactcgttgtaatagcagccaaacacaagtaagtccctatgcaacatttcaattgttcatttccttattttgatagttcaatctcttgtaccaattagttacggatgaattcatttacctgtaggctgaaaaaatactggacctccaaaagcggcttagcctaatggacaggaaagcagcaaaggaaaatggcggaaacatgaatggtgaatctattatcagtgcgacaccaattgacaaggtttggtcacatccaaactacgaaatcccgagatctgcatttcttgtactaatgccatgcatgtttcttgtgacagttgaggtcccagctggatgatgctgtagcgagcgagtgccccttctgcggcgatctgatgatcaaggagatttcattgcctttcattctccctgaagagtctgatgaaaaggcttcgtgggaaattaaaccgcaaccaacgggtcagaaaattcttccaatgaccatgtctatatgattctactagtaaaagctgagatggaatagaatgtttttcgagtttgtatgtgattttgtaatgctgaatatatgctctttcatgtccaatttctggttgggtggctttggtttttgataattgcccagctcgtgtatctttctgacgagcagaacattagctatcctatccagaatagtttgtgtacagaaacatcatcttccacttcacttgggctcttgtacatgcctcctttcatcaactttgctcataataaagttgcgatttgttaggg</dnaseqindica> 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