Difference between revisions of "Os08g0235400"

From RiceWiki
Jump to: navigation, search
(Created page with "{{JaponicaGene| GeneName = Os08g0235400| Description = U box domain containing protein| Version = NM_001188524.1 GI:297726178 GeneID:9268184| Length = 3051 bp| Definition...")
 
Line 1: Line 1:
 +
Please input one-sentence summary here.
 +
 +
==Annotated Information==
 +
===Function===
 +
Please input function information here.
 +
 +
===Expression===
 +
Please input expression information here.
 +
 +
===Evolution===
 +
Please input evolution information here.
 +
 +
You can also add sub-section(s) at will.
 +
 +
==Labs working on this gene==
 +
Please input related labs here.
 +
 +
==References==
 +
Please input cited references here.
 +
 +
==Structured Information==
 
{{JaponicaGene|
 
{{JaponicaGene|
 
GeneName = Os08g0235400|
 
GeneName = Os08g0235400|

Revision as of 20:46, 22 July 2012

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os08g0235400

Description

U box domain containing protein

Version

NM_001188524.1 GI:297726178 GeneID:9268184

Length

3051 bp

Definition

Oryza sativa Japonica Group Os08g0235400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:8215431..8218481

Sequence Coding Region

8215431..8215724,8215846..8215929,8216692..8216808,8217197..8217292,8217374..8217433
,8217511..8217774,8217869..8218030,8218461..8218481

Expression

GEO Profiles:Os08g0235400

Genome Context

<gbrowseImage1> name=NC_008401:8215431..8218481 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:8215431..8218481 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcgcccgcgtccggccccgcacaagccaatgtacatgggcagcacgagccccatctcgcccaggaggactccatctccagcgccgcccccacctcgatcgccgcgccgcccgaggccgccgccgatgtctccccgcctccctcgtccgtcgggagccgcctcccccagcagcccggagacggaggaggccgcggggccgacggatggagccccgccgctgcggcggtcggccagaaggggaagaagaaggagaaggtatcgggagcctctgatgatcgggagcaagtgatggcggagagggacgaggagaggaaatctgatttcctcaggaggaggagcgttcgtgttgcgtatcatggccacgccaaggaggaggtcatgtccaagaagctaccttgggatgatcccagacttcggaaggagcaggtgacgcccgtttccacaataaacaagtcacaccggaccagcgctcttggctgtatcaacaaagaggaaatagatggacttcttgttgtagaaagacccaggtttggaccaccgtatgtggcatgtaatgaattcacacttatgtggtcactgaaaaatgatgaaatttggtaccccttatttgctgaaatccttggagacgctgaccaatcaattgaatcgaggaaggtgtgggatgatattaggcttgtgcgcaagttgaggcccctgcagaattcagagaaaatatcatcccgaacccattacaagatgatcctagttgcagctcataagcatggtcgaaagccaaatcttatctgctctagtttgttcactgaggatcgaaaggccaagggcaagctggaaggtttcgagatcccgcaaaaccttgtttgccccttgtgcggcaatgttatggttgaccctgttatgattgcaacaggaaagactatggaccgtcactgcgtacgggcttggtttgataagcatggacacatctgcccagtaacgtgccagccagtctcttctaccgtgctccgaaatgagcggattagaggatacgtggaagaatggcatgaagctgaactagaggttgaggaagatgctaggaaggttcaacacatctcttag</cdnaseq>

Protein Sequence

<aaseq>MSPASGPAQANVHGQHEPHLAQEDSISSAAPTSIAAPPEAAADV SPPPSSVGSRLPQQPGDGGGRGADGWSPAAAAVGQKGKKKEKVSGASDDREQVMAERD EERKSDFLRRRSVRVAYHGHAKEEVMSKKLPWDDPRLRKEQVTPVSTINKSHRTSALG CINKEEIDGLLVVERPRFGPPYVACNEFTLMWSLKNDEIWYPLFAEILGDADQSIESR KVWDDIRLVRKLRPLQNSEKISSRTHYKMILVAAHKHGRKPNLICSSLFTEDRKAKGK LEGFEIPQNLVCPLCGNVMVDPVMIATGKTMDRHCVRAWFDKHGHICPVTCQPVSSTV LRNERIRGYVEEWHEAELEVEEDARKVQHIS</aaseq>

Gene Sequence

<dnaseqindica>1..294#416..499#1262..1378#1767..1862#1944..2003#2081..2344#2439..2600#3031..3051#atgtcgcccgcgtccggccccgcacaagccaatgtacatgggcagcacgagccccatctcgcccaggaggactccatctccagcgccgcccccacctcgatcgccgcgccgcccgaggccgccgccgatgtctccccgcctccctcgtccgtcgggagccgcctcccccagcagcccggagacggaggaggccgcggggccgacggatggagccccgccgctgcggcggtcggccagaaggggaagaagaaggagaaggtatcgggagcctctgatgatcgggagcaagtgatggttggctggctccgatctttccgtttttcgccgtcatggcgttcttgtttgtcaccttggaggttttcttgggggggttttggtggggtttgttcttgagcatttcttggtttccctgaaggcggagagggacgaggagaggaaatctgatttcctcaggaggaggagcgttcgtgttgcgtatcatggccacgccaaggaggaggtgaggagaaagttttgcttgtcattcttgactggtctggccggggctgggcattcttgtgtcatcttctgtgttggggaattttggatttggatcatctccttcttgtgaaaattcttgggatcatattgcatcatcgatttcataggttcaatcctgtcacttagatgctgttcttgtgtaggaatgtggaacttaggatctttttgctttcttgatttctatttacccacctgtttcattcagttgtgcttcagcgaagaaatattggttggttggaatgatgtggcaactaggcaattgttaggggggcaattcggctatgttctgtggaactttgattcagggaactgctttcttgttttctgtcaaaattattttagacttatttgctcctgcttttgttattctgattttgctgtttaatgtggttcattttaatcaaactgtaaaaatgtggggaatttattgggtgatgttcgattggttcatctagacgtactttgatacaggaacggctttctagttttctgtcaaaattgcttgacactttcgttaatctgatttttgctgtttaatgtggttcattttaatcaaactgtaaaaatgtggggaatttaatgtggtgattttgctttcattgtaactgaatcatccagatgtacttggggattgggattgcatcactggcgccatcgcatgttttggaatcttggagttttgggagcttgttcttgagcgtttcttggtttctctgagtaggtcatgtccaagaagctaccttgggatgatcccagacttcggaaggagcaggtgacgcccgtttccacaataaacaagtcacaccggaccagcgctcttggctgtatcaacaaagaggtaagcagaagtttatttgccattcttggctggctgagcattcttgcgccaaaatttgttctcaggatgctgttcttgtgagaaaccatggaaaatcttgcatccctgcttaggtgccaatttgcgtgttggaaatgttgaactgcgatattagctttcgtgttcctatttgttcctgtgaaatcttcgatgatttagtgtaattgagcacagatatcttagttcaaattatgctgcactctaatgttgagtcgaaatcattagtcatgttagggataattcgactttctgtttctacagtaaatgcttccacaatacccataagtgtgcctttttttgtgtttacttcttgccaatctaactacaaggctgtcaccaatacttgtaggaaatagatggacttcttgttgtagaaagacccaggtttggaccaccgtatgtggcatgtaatgaattcacacttatgtggtcactgaaaaatgatgtaagtaactattatataaatatttcatttaggtttaatttgggtgtcttaccgacaatttatcttgaataaaatgtacaggaaatttggtaccccttatttgctgaaatccttggagacgctgaccaatcaattgaatcggtaaagaaatatggcttcaactaattgctcttggttttataatgtccttatctttggttatgtgcatttgattttagaggaaggtgtgggatgatattaggcttgtgcgcaagttgaggcccctgcagaattcagagaaaatatcatcccgaacccattacaagatgatcctagttgcagctcataagcatggtcgaaagccaaatcttatctgctctagtttgttcactgaggatcgaaaggccaagggcaagctggaaggtttcgagatcccgcaaaaccttgtttgccccttgtgcggcaatgttatggttgaccctgttatgattgcaacaggaaaggtaattaatgggcttttccccctctttgttccttttctatttgcaatttttgtggatagagtgaatgaatggcatgtgtatgtaatatttgtagactatggaccgtcactgcgtacgggcttggtttgataagcatggacacatctgcccagtaacgtgccagccagtctcttctaccgtgctccgaaatgagcggattagaggatacgtggaagaatggcatgaagctgaactagaggttgaggaagatgctagggtatcatttacaagaccttaggctgatcacccaagtagtttgagaagtaactgtatcatactgtgaagtgcttaggctgatcacccaagtagtttgagaagtaactgtatcatactgtgaagtgatggtatttcgcttagtgaagcaaactgtaacatggagtagtgtattttgtgcttgctgattttctgtataaaatctgatctacttgcttattctggcagttgatgagttgctttatctttctttgagaaatgtacatgaatataataataataaaatgatggattgagccatcccttttcgatcaagctaagtaattcctcaagtatactataatccagaaacaatatgctaaataagtagcacgaatgagattcatatacataacatcctacgaaaaggtgcggacttgtttgcctgtctcaagaaggttcaacacatctcttag</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0235400, RefSeq:Os08g0235400