Difference between revisions of "Os07g0414200"

From RiceWiki
Jump to: navigation, search
(Created page with "{{JaponicaGene| GeneName = Os07g0414200| Description = SAM (and some other nucleotide) binding motif domain containing protein| Version = NM_001065991.1 GI:115471714 GeneID...")
 
Line 1: Line 1:
 +
Please input one-sentence summary here.
 +
 +
==Annotated Information==
 +
===Function===
 +
Please input function information here.
 +
 +
===Expression===
 +
Please input expression information here.
 +
 +
===Evolution===
 +
Please input evolution information here.
 +
 +
You can also add sub-section(s) at will.
 +
 +
==Labs working on this gene==
 +
Please input related labs here.
 +
 +
==References==
 +
Please input cited references here.
 +
 +
==Structured Information==
 
{{JaponicaGene|
 
{{JaponicaGene|
 
GeneName = Os07g0414200|
 
GeneName = Os07g0414200|

Revision as of 20:34, 22 July 2012

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os07g0414200

Description

SAM (and some other nucleotide) binding motif domain containing protein

Version

NM_001065991.1 GI:115471714 GeneID:4343016

Length

10443 bp

Definition

Oryza sativa Japonica Group Os07g0414200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:13718001..13728443

Sequence Coding Region

13718246..13718341,13724882..13725024,13725099..13725201,13725355..13725443,13725554..13725735
,13727092..13727201,13727965..13728186

Expression

GEO Profiles:Os07g0414200

Genome Context

<gbrowseImage1> name=NC_008400:13718001..13728443 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:13718001..13728443 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaaggaggcggcgagcgcgcggcggaggcggaggagtaccactgccacgacttcgagtgggaggacctccgggcggaggtggaagccaaccctgccttctcctaccacctctccccatttcccacgaccgtcggcaccccggagacgccgccgccgccgccgccctcggaggcctggacgagcttccaccgtcgccacacatgcggcaagtttttcaaggaaagaaggtatttgctaaaggaatttccagaacttcttaacagcaaggatagtgcaaaggttttagaggtgggttgtgggaatggaagcactgttgttcccattttacgctctagtccaagcacaactgtatatgcttgtgattgtagcaaagaaactctggagaaggcaaatgagattgtttgcagcacaaaaggagttgaagtcaaggataggttccatccttttttactggatgcttcgaaggaaacttttccagattggttgttctgcaaatcctgtcgaagtccatgctcaagtaattgtaatatgatagaagaataccctgcctttctcagagacaatccatgttgtgttgatggtgtggattttatcactatgatattcacattatcagccataccttttgacaatatgctagctacactagagcgttgtgtatctgttctaaaaccaggtggccttgttttgtttagggactacggactctatgacatgacaatgcttcggtttttacctcaccaaagagtgggattccgggaatacatgcgctcagatggcaccctttcatacttcttcacattagatacagtgagagaactctttcatgcctctggactactagagttggaactggggtattgttgtgtcatatcagtgaatagaaaaaaggggaagaagatgcaacgggtttgggtgcatggcaaatttcaaaaaccctaa</cdnaseq>

Protein Sequence

<aaseq>MEGGGERAAEAEEYHCHDFEWEDLRAEVEANPAFSYHLSPFPTT VGTPETPPPPPPSEAWTSFHRRHTCGKFFKERRYLLKEFPELLNSKDSAKVLEVGCGN GSTVVPILRSSPSTTVYACDCSKETLEKANEIVCSTKGVEVKDRFHPFLLDASKETFP DWLFCKSCRSPCSSNCNMIEEYPAFLRDNPCCVDGVDFITMIFTLSAIPFDNMLATLE RCVSVLKPGGLVLFRDYGLYDMTMLRFLPHQRVGFREYMRSDGTLSYFFTLDTVRELF HASGLLELELGYCCVISVNRKKGKKMQRVWVHGKFQKP</aaseq>

Gene Sequence

<dnaseqindica>10103..10198#3420..3562#3243..3345#3001..3089#2709..2890#1243..1352#258..479#ggtcagcaacgacaggacacggctgctattccgcttctttccgctcggaccagcccactaccggcccactactgaagtgaaaccaccctccgccgccgccgccgctcgccgtagtcacctccgccgccaccctctcttcccagtgctacctccccgccccgccgctttgccgcctccggctgaggcgaatttccagtatccaagccagtcggacataagtaagggcggggaggaagccgtgcctgcgagtttcgaccatggaaggaggcggcgagcgcgcggcggaggcggaggagtaccactgccacgacttcgagtgggaggacctccgggcggaggtggaagccaaccctgccttctcctaccacctctccccatttcccacgaccgtcggcaccccggagacgccgccgccgccgccgccctcggaggcctggacgagcttccaccgtcgccacacatgcggcaagtttttcaaggtttcaatctccgctctcctccctgttaccctgcgcagatctgtcgtctactttttttttccggactgcgcaaatcgttaggaattaggatttctattgtgcgagatagatgttcttcgtcgtggagacctccagtcctccacacttgttgaagctgcgttgttgttgttgtgatgtgagctaggtaggcaggagatcgagggaatgacagtgccaccgtgttccactgtttctcgaggcatgaaattagaacggaactccccatggtaatgcaatcccttgcatagatcgacacgatggcctgtaataaattccatacatttgttaccagatcgtccaatcggagatgatggtttggaataatatgctgctctgtttattctcccatgttattcatggcttgaggggcatatatcatgatggatattacgggccttgtggacctcttcgcagcgcagcatcttgttcgtatgagttttgactctttgagtcctacactagtaactcataccacagggttgctatttacatcaatcgtgtttcctttgtgttaggtgatctagtgtttttctccacattttccacagtttgctgctattgtgcttgggtacaatgatatcaagaaaatgtgacctagactttttctgtgaataggtaaggataatatgaattgatgtagtaagacactataactaaattttaaggaaacaaataagtacttttaaggaaacaagtaactaacctgatcatctcattttgttaggaaagaaggtatttgctaaaggaatttccagaacttcttaacagcaaggatagtgcaaaggttttagaggtgggttgtgggaatggaagcactgttgttcccattttacggtaatgtcctccaaagcattgttgtatttagtaaaaaaatatctatttgtagttgcaaatgcaaatcgttcaatgcttattttttttgttatagagtaattaaacattgatgtaggattatagccgcaaatatatttggtactttggttatcaaagtaaataatctagacaaaataaaaagagaaaaaaaacaacatgcactttttaacacgcacactggtgattaaacagctaatggtcactagtttgctagtcaaattgccagtatgctggtcagacacatattctcgtgacatttcttacctgccaacgtgctgcataaaagaattgtacccaatacaaacaaaagtgatttcttgctttttgcttagacttcttggaattccatttccatgttaggcatgtgcatatttctcacttaagaaatcatccaatccagcacaaagtccatgaagtatacttcaatctccaccgatccagcataatatcaaagcaaatcaagcgatctccatgagatgcttttaatcgctcgttgccattggcatgcagctgatgtagtctggttctgaattttttccttgtttaactgccagttctgtactgtttaactattatgctttctagctcagagttggtttggaactttggatttgtcaagttcatgcatctttgaggataaagaatacttttgcctatgggcatttgaaaactgttgacacccagcatcaacaaatacttctcctttcaatttcttctgcttctgaagttatacataatcctggaatgtaaaattttctgtctttcttttctttctttgtttgtaacatctgatgatttcagtttactatatcatactttttgttaactagaaaacttgttaaatttcattcttttttatttttcccctgaaaagactatttttggtttgccacttttccaacattctgttctgtgcatggtgctttaatcagtactagtgatgtatttattaaggaattttatcgcaaactggatagctcaataatgctatgaacaatcattgtaatatcttcattgaagtgatgcatattggatcaactttcaattagcgatgaatatgcaactcaagcactttatggattaacacttatggcatgatactctaattatgtatttataattgggcgagagcaaaaagaatagaattaccgctatatacaaccttttaggagcatacatatatgggatggaagttgcagataaacttcagagttgaacgtgcttgccataacttgaagtttatgtagttcatggtttaagtgattgcctcgtcataactactaatgatgacatcgttgctatctactctttctacagctctagtccaagcacaactgtatatgcttgtgattgtagcaaagaaactctggagaaggcaaatgagattgtttgcagcacaaaaggagttgaagtcaaggataggttccatccttttttactggatgcttcgaaggaaacttttccagattggttgttctgcaaatcctgtcgaagtccatgtgcgaaggatgttgaccttttactagtttaattaattgttttgaaattttcttttacccgaattatctactccaataatgtttgattcgatggtaccttttcctttcaggctcaagtaattgtaatatgatagaagaataccctgcctttctcagagacaatccatgttgtgttgatggtgtggattttatcactatggttggtagcactatctttaccctattttttgtcaaagcacttccattagcattataatgttgccatgctgtgagttctgaatgtatattgtaaaagtcaaacctccactatttatgctcttgtttacatcaagtttgtatgtacgcttttcagatattcacattatcagccataccttttgacaatatgctagctacactagagcgttgtgtatctgttctaaaaccaggtggccttgttttgtttagggactacggtaatgccctggccatactattgtattatatatcattgatcaataatcttgctgacatctctttattgtattaggactctatgacatgacaatgcttcggtttttacctcaccaaagagtgggattccgggaatacatgcgctcagatggcaccctttcatacttcttcacattagatacagtgagagaactctttcatgcctctggactactagaggtaactcggattgttttgacatgttctcagttttctagttactttccacctttctttgcccctgcatgtgcccctcatggtagcattcaatattttatgaattaaagatgtatgccttagtcgattgtttcgttccttgttagaacttctgtgcagatcataataaatgcatcagaattgctcttatcactattaaaattactttgtaccaaaccaatgtatcataatttctgtttcgctccaaaataatccagctatatatgattaaaatcatgagatatatttcaggcttctgtatatttgagtcatctgaaatttttacatttttgtccttttcgaaaacttattttataaatggacccctggaaaaacttattccgggagtggtcctttttggtgcaccagagtggctggcgccgtactccaacatagcggcgctagccaccctggcaccgtgaccgtgccaccttggcacaagggcaagcgttgaaggggtgacgtggcaaatgggggcgccagccactttggcgccgcccctcataccatggcgccagtcaccctggcgcacccctcctagggggccaagctctaaccttctgccttaggcgggaggttggcgccacacaccccaagcacagcgccaggttggctggcgccgcccccccacccacccccgaggacttctgcctcggccgaattgctggcgctgcccctcgaagcatggcaccagcgtgcttggcgctgctcccccaacccgtagatcttctgccttgggcgggtggatggcgctgccccctatagcacgacacaagggtgactagcgccgcccaccaccccccgaggccttctgcctcgatcgatttgctggcgccgccccctagcacggcgccagggtggctggcgccgacctcttcctccctgccaacttcaaatttcatttggacagtttgcaaacaatgcaaatatcgacaccaaatcacagtaaacatacatatcacaaaacaggttacacagcaaatattgacaccaaatcacatatcacatagtccacaagataactagattgacgaaaaaagtccacaagtccacaactccatcacatattccacacatcaaacaatactacaaatccatcacgtacttcatacaaccaacaagtccaaaagtccgtgaaacaagttaacatatgacacatagatcaacttcatagaaatcactttttccgttggcgccgaatagcttgtgagcccggagtgtatctacatttgaaaaaccaatgtttaaaacatttaaaaaacaaagtgagggaaatcaaataacacttgagaatggtaagctcattttacctctttttcgctggccgagtggatcacaagttgtattgggtgggctgtgatgcatgaggtgcatcggagactgcgacatgcctatctcctcggcgtctggtgcgatgtagccctcatcctcctcctcctcctcctcctcgtcgtcgccgctaggtggagcctgtgccttcccctttccccttccctgtggaatgcgtgacgacgacgaaccaccaacttgttcacgctcttctatcctgatggagtgtcgagcagtacttggacacacggattgaggtagtggtggtggtactctccgcggttggtacacgtcgtccaatccaaccgacctgtaacctaatcttgcagcaagtttgcggcacctttggcgaactttttgaattaaaaaaatagaagtttgttaggcataagtcaagtaatgcaaagtgttaaatcatttttacctctaagacattgcgaagtgtgttctccgtatcttcaccaccccttggagatcagagggcatgtcccatttaattcatactcctaaggagctctctggactaaaagcatgagaagatgtatattagggtttagggtgcaaatggaaatcattttgacaaatgcaagaaaacttacgactctgtctctaagtggggcgtgctccatttgatatccaaccctagtccgaacgtcgtagggatgtcgcccctcatcagagtcgcggtcttcctctatattggcttccgtccaagtagggcgtaggaacagtttatatgtcctatgcagccaacgaacgtactcagtaaaaagatgattttgctgtattgcctcgatgtacctatcgttcctttccgctgtcctccattcatcaatggatctgttatactctagcacccagtccttcaccttctttgttctcaccctgtcgtaccttgacaaatggaaggtgatgatgtgtcaaataagggtcaaatggtgcaaaattgaacattgacaatgaaagcaagcagagataaaaaatattacttgtgtagatcaactctagttgagatgtccttaacaagacattcttgtctcttcccaaactatcgcatgacatggtacggaaggtggtactcaactgcccagaaacaaatcaattggcactggtacatgaagtaatcggagcctcgattgcacaacgagatcagtgtaagacttgtagcctcagtggtgtggtatggtaaccactcaatctataaatgttgaagagttgtcgtaggttagtatttcaatcatataagtaaatgacgaattagaagtgatagtggaagtacttatatgtgtaggctgtaggcagtccatcacgttgatgtactgcttgtatgcgacgtcccggtgagcatgtgcagtggctatactctcaaataggtaggccactgtcttctccatgtctggctcattgtagggccaaagggtaaagctttgcctccacttaggcttgccaaccggtagtcttagccacatccacatctgaatcaccagcacacaaccactaatgttggatgatggtgcctggcgacaacaggcctcgaagagctgtctataagtccatgccaacaccgctgagccccaactaaaacggcccagatcatcaagtttagtgaccaaagaaatccaaattgccgaagcaatgtcacccccaacatctagaaaaagaacccctcccaacaagtgcaatatgtatgcacgggcatagcactcaacacgccatggctcagcgttgttgtctaggtatgaaaagttctggctaagtcaagagaggggtattccgttctgcttcttattgctcccttgcccctgctcaatgttgagtgcaatgccaaacaactgctctacttgtacacgtcatctatgattccatgtcttgcccgtcaccgcatgtccccgtattgggagggccaagatccccgcatggtccccatatgtgcaattccgaagcattgccaaacaaaggtctcgtcttctatccttgcccatccaagtcttctcgtaccaactcagtcttacttgcaccccctcaacgacgagaagaatatgtcacaaaattattcttaatgtaatgaggagacttgtttaggtgaagaacttctttcactcgtgaccttagcttccacctctccagtggtgagtggtgagatgaccatcactcttcaagatgtggctatgatcttggccctcccaatacagggacatggggtgacgggcaagacagagaatcctggatggcgtgcacaagtggagcagttgtttggcattgcactcaacattgagcagggataagggagcaagaagaagcataacggaatacccgtctcttggcttagccagaacttttcagacctggacgacgacgttgagccatggcgtgttgagtgctatgcccgtgtatacatcttgcacttattgggaggggttctttttctagatgctgggggtgacattgcttcggcaatttggatttctttggtcactaaccttgatgatctgggccgttttagttggggctccaacggtgttggcatggacttatagacagctcttcgaggcctgttgttgccaggcaccatcatccaacattagtggttgtgtgctggtgattcagatgtggatgtggctaagactaccggttggcaggcctaagtggaggcaaatctttaccccttggccctacaatgagccatatatagagaagacagtggcctacctgtttgagagtatagccactgcacatgctcaccgggatatcgcatacaagcagtacatcaacgagatggactgcctgcacatataagtactttactatcacttctaattcgtcatttacttctatgattgagatactaacctacgacaactattcaacatttatagattgagtggttaccataccacaccactgaggctacaagtcttacactgaactcgttatgcaatcgagactccgattacttcatgtactagtgccaattgatttgtttttggcagttgaataccaccttccgcaccgtgtcatgcgatagttcgggaagagacaagaatgtcttgttgaggacatctcaactggagttgatctacacaagtaatattttttatctttgcttgctttcattgtcaatgttcaattttgcaccatttgaccctattttacatatcatcaccttccacttgtgaaggtacgacagggtgagaacaaagaaggtgaaggactgggtgctagagcataatagatccattgatgaatggaggacagcgggagaatgataggtacatcgaggcaatacaccaaaatcatctttttactgagtaccttcgttggctgcataggacatatagactgttcctacgccctacttggacggaagccgacatagaggaagaccacgactctgatgaggggcggcatccctacgacgttcggactagggttggatatcaaatggagcacgccccacttagagacagagtcgtaagttttcttgcatttgtcacagtgatttttatttgcaccctaaaccctaacatacatcttctcacgctgttagtccagagagcttcttaggagtgtgaatgaaatggggcatgccctccgatctccaaggggtggtaaggatacggagaacaaacttcgcaatgtcttagaggtaaaaatgatttaactctatgcattacttgacttatacataacaaacttcttttttttttaattcaaaaagttagccaaaggtgccgcaaacttgctgcaagattaggttgcaggtccgttggattggacgacgtgtaccaactgcggagagtatcactaccactaccttaatccgtgcgtccaagtaccgctcgacactccatcaggatagaagagcgtgaacaagttggtggtttgtcatcgtcacgcattccacagggaaggggaaaggggaaggcacaggctccacctagcggcgacgatgaggaggaggatgagggctacatcacaccagacgtcgaggagataggcatgtcgcaacttcccgatgcgcctcatgcgtcacagcctacccaatacaacttacgatccactcggccagcgaaaaagaggtaaaatgagcttaccattctcaagtgttacttgatttccctcactttgttttttaaatgttctaaactttggtttttcaaatgtagatatactcagggcttgcaagctattcggcgccaacggaaaaagtgatttctacgaagttgatctttgtatcatgtgttaacttgtttcacagacttttggatttgttggttgtatgaagtatgtgatggacttgtagtattgtttgatgtgtggaatgtgtgatggagttgtggacttttttcgtcaatctagttagcttgtggactatgcgatatgtgatttggtgtcaatatttgctgtggaacctgttttgtcgatatttgcattttttgcagactgtccaatgaaatttgttgttggcagggaggtagaggtcggcgccagctaccctgacgtcgtgctgggggggcaacaccagcaaatcggccgaggcagaaagcctcaggggtgggagggttgctggcaccgtgctatggggggcggcaccagccacccgctcgaggcagaaggtctacgggttgggggggacggcgccaagcacgcttgcgccgtgcttcggggggctgcgccagcaattcggccgaggcagaaggcctcgagggtgggaaggggggaggggcggcgccagccaacctggcgccgtgcttgggggggggggggtggttgcggtgccagcttcccgcccgaggcagaaggttagggcttggcccctacctaggaggagtgcgccaggcacgctggcgccgtggtatgaggggcggcgccagtgtggttggcgcccccctttgccacgtcaccctctccacgctcgcccttgtgccacggtggcacggtcacggcgccagggtggctggcgccgccatgttggagtacggcgccagccactctggtgcaccagaaaggatcattcctgtaataagtttttcaaggggccatttgtaaaataagttttaaaaaaggaccaaaaatgtaaaaatttcagtttgtgtcattggtgctttggtccagtttccttgtatgtctgtaacttatgaaaccattgacttgcatttgcctatcattgtgcagttggaactggggtattgttgtgtcatatcagtgaatagaaaaaaggggaagaagatgcaacgggtttgggtgcatggcaaatttcaaaaaccctaaagttgttaagttgatatgataactaccgccagtacatgtagtaatgctaaggcaacttagattgtagggttttagatcttgccgtttgtttcctgtgggccctgagaggagaaatcgtggcctggtaaacttattgaaattgagacactgtaactacaaagcttgctgcaggtaaacttactgttttgaacgttaaaatttttaatggtcaaggccaccttccgaaggtgagccttttgtttgtg</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0414200, RefSeq:Os07g0414200