Difference between revisions of "BGIOSGA028019"
(Created page with "{{IndicaGene|
GeneName = BGIOSGA028019|
Description = COC1Circadian oscillator component|
Definition = Oryza sativa Indica Group BGIOSGA028019, complete gene.|
tag = OS08G...") |
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| + | Please input one-sentence summary here. | ||
| + | |||
| + | ==Annotated Information== | ||
| + | ===Function=== | ||
| + | Please input function information here. | ||
| + | |||
| + | ===Expression=== | ||
| + | Please input expression information here. | ||
| + | |||
| + | ===Evolution=== | ||
| + | Please input evolution information here. | ||
| + | |||
| + | You can also add sub-section(s) at will. | ||
| + | |||
| + | ==Labs working on this gene== | ||
| + | Please input related labs here. | ||
| + | |||
| + | ==References== | ||
| + | Please input cited references here. | ||
| + | |||
| + | ==Structured Information== | ||
{{IndicaGene| | {{IndicaGene| | ||
GeneName = BGIOSGA028019| | GeneName = BGIOSGA028019| | ||
Revision as of 17:10, 22 July 2012
Please input one-sentence summary here.
Contents
Annotated Information
Function
Please input function information here.
Expression
Please input expression information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this gene
Please input related labs here.
References
Please input cited references here.
Structured Information
| Gene Name |
BGIOSGA028019 |
|---|---|
| Description |
COC1Circadian oscillator component |
| Definition |
Oryza sativa Indica Group BGIOSGA028019, complete gene. |
| LocusTag |
OS08G0157600 |
| Ensembl Transcript ID |
BGIOSGA028019-TA |
| Ensembl Protein ID |
BGIOSGA028019-PA |
| Length |
6556 |
| Source |
Oryza sativa Indica Group ORGANISM Oryza sativa Indica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 8:3642129..3648684 |
| Sequence Coding Region |
3642129..3642167,3642240..3642351,3642535..3642596,3646541..3646759,3646867..3648246 |
| Genome Context |
<gbrowseImage1> name=IndicaChromosome08:3642129..3648684 source=RiceIndica08 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=IndicaChromosome08:3642129..3648684 source=RiceIndica08 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>ATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAGGTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGGCAGAGCACAACAGGTTCCTTGAAGCCTTGAAACTGTATGGGAGAGCCTGGCAGCGCATAGAAGAGCATGTTGGGACAAAGACAGCTGTGCAGATCAGAAGTCATGCTCAAAAGTTCTTCACCAAGTTGGAAAAGGAAGCTATCAACAATGGCACTTCTCCAGGACAAGCTCATGACATCGACATACCTCCACCACGACCAAAAAGAAAACCTAACAGTCCATATCCTCGAAAAAGTTGTCTCAGCTCTGAGACATCCACCAGGGAAGTTCAAAATGATAAGGCAACAATATCAAATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAGAAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTTAATCTCTTTCGAGAAGTCCCATCGGCATCATTTTCTTCAGTTAACAAAAGCTCTTCAAATCATGGTGCATCCAGGGGGCTGGAACCGACTAAAACAGAAGTCAAAGATGTGGTCATCTTGGAAAGGGATTCTATTTCCAATGGTGCAGGGAAGGATGCAAAAGATATCAATGATCAAGAAATGGAAAGGCTCAATGGGATACACATCAGCTCGAAGCCTGATCATTCTCATGAAAACTGTTTGGATACCTCAAGCCAACAATTTAAGCCAAAATCAAACTCTGTGGAGACAACATATGTGGATTGGTCTGCTGCAAAAGCTTCACACTACCAAATGGACAGAAATGGGGTTACTGGCTTTCAAGCCACTGGAACTGAAGGAAGCCATCCTGATCAAACAAGTGATCAAATGGGAGGAGCCAGCGGAACTATGAATCAATGCATCCATCCAACACTTCCTGTGGATCCAAAATTCGACGGCAATGCCGCAGCACAGCCCTTTCCTCACAACTATGCAGCCTTTGCACCAATGATGCAATGCCACTGCAACCAAGATGCCTACAGATCTTTTGCCAATATGTCATCCACCTTCTCCAGCATGCTTGTCTCCACATTGTTGTCAAACCCTGCAATCCATGCAGCTGCCAGGCTTGCAGCATCGTACTGGCCTACAGTAGACGGCAATACTCCTGATCCAAATCAAGAAAATCTTTCTGAGAGTGCTCAAGGAAGCCACGCTGGCTCTCCTCCCAACATGGCATCTATTGTCGCAGCTACAGTTGCTGCAGCATCAGCATGGTGGGCAACACAAGGTCTTCTCCCTCTTTTTCCTCCACCTATAGCTTTTCCATTTGTTCCAGCTCCTAGTGCTCCCTTTTCCACAGCAGATGTTCAGCGAGCTCAAGAGAAAGATATAGACTGCCCAATGGATAATGCACAGAAGGAATTGCAAGAAACTCGGAAACAAGATAATTCTGAAGCTATGAAGGTCATAGTGTCTTCAGAGACTGATGAGAGTGGAAAAGGAGAAGTGTCGCTCCACACTGAGTTAAAGATATCTCCAGCAGATAAGGCCGACACCAAACCTGCCGCAGGAGCTGAAACAAGTGACGTTTTTGGAAATAAGAAAAAGCAGGATCGCTCTTCATGTGGTTCCAACACACCGTCAAGTAGTGATATAGAAGCAGATAATGCTCCTGAGAATCAAGAAAAGGCTAACGACAAGGCAAAGCAAGCATCTTGCAGTAACTCTTCAGCCGGTGACAATAACCACCGTAGATTTAGGAGCAGTGCAAGCACAAGTGATTCATGGAAGGAAGTTTCTGAAGAGGGTCGTCTGGCTTTTGATGCACTGTTCAGTAGAGAAAGGCTTCCCCAAAGCTTTTCTCCTCCGCAAGTAGAAGGATCAAAGGAGATTAGCAAGGAGGAAGAAGATGAAGTAACCACGGTGACGGTTGACCTCAACAAGAATGCCACTATTATTGATCAAGAACTCGACACAGCGGATGAGCCAAGAGCTTCCTTTCCTAATGAATTGTCAAACCTGAAGCTGAAATCTCGCAGGACCGGTTTCAAACCATACAAGAGGTGCTCAGTGGAAGCGAAGGAGAACAGGGTACCGGCTAGCGATGAGGTTGGTACCAAGAGGATTCGTCTTGAGAGCGAAGCATCGACATAA</cdnaseq> |
| Protein Sequence |
<aaseq>MEINSSGEEAVVKVRKPYTITKQRERWTEAEHNRFLEALKLYGRAWQRIEEHVGTKTAVQIRSHAQKFFTKLEKEAINNGTSPGQAHDIDIPPPRPKRKPNSPYPRKSCLSSETSTREVQNDKATISNMTNNSTAQMAGDAALEKLQRKEISEKGSCSEVLNLFREVPSASFSSVNKSSSNHGASRGLEPTKTEVKDVVILERDSISNGAGKDAKDINDQEMERLNGIHISSKPDHSHENCLDTSSQQFKPKSNSVETTYVDWSAAKASHYQMDRNGVTGFQATGTEGSHPDQTSDQMGGASGTMNQCIHPTLPVDPKFDGNAAAQPFPHNYAAFAPMMQCHCNQDAYRSFANMSSTFSSMLVSTLLSNPAIHAAARLAASYWPTVDGNTPDPNQENLSESAQGSHAGSPPNMASIVAATVAAASAWWATQGLLPLFPPPIAFPFVPAPSAPFSTADVQRAQEKDIDCPMDNAQKELQETRKQDNSEAMKVIVSSETDESGKGEVSLHTELKISPADKADTKPAAGAETSDVFGNKKKQDRSSCGSNTPSSSDIEADNAPENQEKANDKAKQASCSNSSAGDNNHRRFRSSASTSDSWKEVSEEGRLAFDALFSRERLPQSFSPPQVEGSKEISKEEEDEVTTVTVDLNKNATIIDQELDTADEPRASFPNELSNLKLKSRRTGFKPYKRCSVEAKENRVPASDEVGTKRIRLESEAST</aaseq> |
| Gene Sequence |
<dnaseqindica>1..39#112..223#407..468#4413..4631#4739..6118#6209..6556#ATGGAGATTAATTCCTCTGGTGAGGAAGCGGTGGTAAAGGTGAGTTGTTCTTTGATGTGCATGTTGATTCGTGTTAAAAGGGAGCAGCATTTTATTAGGGGTTATTTGTAGGTGAGGAAGCCATACACAATCACAAAGCAGAGGGAGCGTTGGACTGAGGCAGAGCACAACAGGTTCCTTGAAGCCTTGAAACTGTATGGGAGAGCCTGGCAGCGCATAGAAGGTGAATTCTCCACATATATATGTCATATCACAAATAGTTCTATGCTATTACTTTCTGAATTTACTTTTTGTACTCACTGTGATTATTAGCTGGTTAATAAATACGGCTTTAATTGAGTTATTGATATGGATCTTGCATCTTTTTTTTTTCGTTTTCTTGTTTGCCGTCTGATTTATTCTATAGAGCATGTTGGGACAAAGACAGCTGTGCAGATCAGAAGTCATGCTCAAAAGTTCTTCACCAAGGTTCTTCCTCTATCTTATTGGCCAGTGCTCCTTTTTTTGGTTTAGCGCTATCTCCTTAGCTTTCTGGTTTCCTTGTCTTTACCTTTGGGATAAAAACGGCTGGCTTTTATGCTTACTTTCTTATTATTTTTTCTTACTTTCTGCAGTATTATTTCTTTCTTTCCTTCTTTTATTTTACATATGAGTACTGCAATTATGTACATAGAGTCTGAACTGTGTGTGATCAGTTCCTTTCGATTATTATGAGAACTACACTTATGGCTTTTGTGCTCTGTTAGTTGGATGAAACGTTAACTAAACAGTGCTGAGATGGAAAAGAAGCACTAGGAAGTGTTTGTCTCGTAGTAAAAAAAAATAATGTTGCAAAATTGATGCTATTAAACATTCTGTTTGCATGTTCCTTTATTTACATATCCATCCTATCACTGAGATTTTGAGCATGCACAGATGCACTTATGACAAAAAAAAAGCATTTTGGTACTGTTATATTTACATACTAAGTCAAGTCAAATTGTATATCTGGACTATCATCAAGATTAGTAATAAAGATTTAGTTAAACATGTTCCAGTGCCTACGTGGTGTTCATAACTAATAAGGATTCTTAAAAAAAAAAGAACTAGGGCAGCCATTTGAGACAATTTATTAAAATAAGAAAAATGTAAAATGATTTGCAAGTTGACCAAGGTATCACCTTCCATTAGAAATAGCCACTCAATCGCGCATTTGCGCGACTTTGACCGACAGCATATAATATGTAGGAGTAGTTATAACAGTCACGAGTGGATTAAGTTTCTTTTATTTATACATTAGGCTTATTTTTTAATGAAATTCTAATTTACGCGGTAGAATTGTATCTTTATTTTTGAAAAGGGTTGTCTATTATTAATGATTTTTTTAATCAAGGTGTAATATTGGAATTCACAGTTATTTGTTCGGCAAACATTGTAATAATTGTCTGTAGATTCACTAAAGTAAAGGTCGGAATAATTTTTGCCATGCTGGCTTTTTCTTTAGAAAAAAAAAGAAGAAAACTGTTGTCCGGTTTCCTCCAATTTTTTTTCTACGTGGGCTGCCTGCAGGTTCTGGAGGTTTCTCTTTGGAACTCTCCTTGTTTGATTAGGGCTAATCCAACGGTTGTTGTTGCTTATTTCTTTGCATTGGACGGTCCTACATTTCTTTCTTATGTGGCTCAACCAGATTGTGTGAAAGTAGTTATTTCACTACTTTATATTGTGTGAAAGGTCGGAAAACATCAAAAATAATACTGTACACCTATTGTTTATCAGTCAAAACAGAAGGACCTAGTCCATTCCCTTCTTTTAAAAAATTTACTCCCAATCTAAGTCTTGTTTTTTTTCCTGTTGCGCAACCTACCCAAACTGTGCCTTTTAGGGGCTTTACACTGCCACCTGATGGAGGTCACGTTGCCATCACTGTGCAACAGCCACTGGACTGTTGCATTGTTGATTGCATCATCATCCTCTCAAAGGTCTCATTGCAAGATCTATGAATGGGGAGGAACACAAGGTTAGTAATTTAAGAAACATGATGGCTTTCTGGTTTCTCAACTCTATATCCAGCCAACATCCATGAGCTTCTGACCTTCCATTGTTGTGGTGGGTTGGATTTTTGGTTTGTTGATTAAAGAGGTGAATAGGTCTGCCCTAATCTCCATAAAATATGTAATACAGCTAATAGGTTTTCGTCGCTGCAAGTACTTGCCAGTAACTGTTCTCCATGTCTAGGCTCATAAAAAATATAGAGTGACAAGTAACAACGTTTAACCTGACCAATACTTATACTGCTTAAATACCTTCTGTTTTCTAACAAGTATGCAGTAAATGTAATCAGTGCTACAATAACTGCTTGAACATTAACCATGCCTAGAACTTGGGACCATACGCTCATAACATTGGTTTGAGAAGGGTAGTGGACTGGGAGGATATACTCTAGTCACGTATTTCCTAGTAACCCCTTGATTTTGCCAAAAAAAAGGCAACCAAGGCAAATTACCACTGTTCATTGAACCCTGATAGTCAATAGTTCGAAAAGTGGTAACTAATAACTGTGAAATGTCCATTGTGGTTGATGTCAATTAAATTAGTCTTTACTTTGATAAGATGTCCAAGAGCTTTTTGGAGCCCCGAAGGGTTATGAGTGATGGCCATTCCAGGCTTCAGATGCACAGTCGCTTTTCTTTTGCAAAGACATGCAACAATGTTTGGTTCTACATCAGCACTATACCAGTAATTGCAGTAGTATAGTTTTGGCTTGTCGTTACTGGTTTCTGGGCTGAAGTCCAACATGACTAGGCACCATTTGTGGTCTTATCTAGTGACTAGGCTCCATTTGGTTCTTGTCATAATTATCCACAGAGATCTGGTTCATTGATCACTTTTTCTACTGTATCAGCGAAAAGTTTGATGATATTACCGCCTATACAAATGTTATAGCATGCTGCTAATCATACCCACCAATGCATGCTCTCCCCTGTTTGGTCAATGATGATTGATGCCATGGTTGATGTTCAAACTAAACCTCGGCATGTCATTCTGAGATCAGAAGGATAATATAGGCATAAAACTAAATCTATGACAACCTGTAATGTGGAAATGGCCTTTTTCTTTTATGCAGGTGAAAAAAAATAAATGCGTACTAAATTAATAATAACCCAAGGGGAGAGACATCCCAAAGGCATTGCATATAAGGTTGAGCAAAGGCCCCAAAGCCAGCTCATACCCGTATGGGTACTTTAGGGGAACATATAGCGAGGGGTCTTTTTTTTTGTGAGAACTAGGAAGCCTCATGACTGGAGGACTTACCAGTTACCACCGTGCTACAAGCACGTTCTCTCTACTAAATTTATAATAGCAAAGTACTTGGCTTCAATGTGACTTTTTAGGTCCAGGAAAAATGCTTTCAAATTTCTTATCAACTTATCATCACAATAGCTAGACGATGATTTTGATCAATAAAAGAGCAGGGGAATGTCTAGTTGACTGAAAGTAGAAGAGGAACAATTTTCTTTCTGCAAATTTGGCTTCAAAATAATCTGTTGAAATATTCATCATTACATGTTTTCTTTTGGACAAAGGAAGTGTAACTTCCAGCCTCTGCACCAACTAAGGATGCAAACAACCATATTTGTGGATACCAGGATTTGAACCCTGGTGGCTGGAGTCATTACATGTTTTCTATATTCCAACTTCCATGTCAAACCATGTTCCTGAAGTATAATGCTCATTAATTATCTAATATGGCAGCAAGGCAGACATAATCCGGTAAGTAAAGGGTAGGGCTGACCGCCCTCTGGTCAAGCAGGCTCTCCCTGCATAGCAGGAGGCTCTGCTTGGTGAAATACAAAATCCTTCTCTGATATTATTGCTTATTTTTCCTTAATACACATACTAGTCCACCTTTATAGCACAAGTGCTGAGATATGTACTTGGAAGTACTAAATAAACTAGGAAGCTCTAGCTAGAAAGTACCGGTTCCCGAACCGATGGCTTCATGAAGCTTTTTGCCAAAGGTTTTTAGTAACCTTCTACATGACACTCCCTCTACTCCACAATATTTGTCCAAGACTATCATCTGCATAGACCAAGGAGGTGCAAGATATAAGAAATAGTTAATGATAATGGACTATATATACCATCTGCATAACTTTTATACCTCTTTTAAGCATTATATAAAGTTTAGTAGAGAGTTGGGACATCGCAATAAGTCCAAACTCCTAATTTTCTCGACAAACAGACATTGTCAAAGGGGACAGCCCCGAGAAAATGAACAAATCTTGTGGAGCAGACGGAGTAGCATTATGTAAAATATCAATATCATGTAGTATGGCACTTTCATATTTGTCAAAATTACTGTTAGATATGCCTGATTTGTTTTCTGTTTCTTTATGTAATTTAACTGTATCTAACTAATTGAAATATTACAGTTGGAAAAGGAAGCTATCAACAATGGCACTTCTCCAGGACAAGCTCATGACATCGACATACCTCCACCACGACCAAAAAGAAAACCTAACAGTCCATATCCTCGAAAAAGTTGTCTCAGCTCTGAGACATCCACCAGGGAAGTTCAAAATGATAAGGCAACAATATCAAATATGACGAACAATAGCACTGCACAAATGGCAGGTGATGCAGCTCTTGAGGTACATACCTTTGTAGTATTTCGTTTTAGTTAGGTTTCTATTTTTGATTTATCCTTTTCTTTAATGTGCTATCCTGTTTCTTTAACAAGAAACTCACTTACATTCAGAAACTTCAAAGAAAGGAGATATCTGAAAAAGGAAGTTGCTCCGAAGTTCTTAATCTCTTTCGAGAAGTCCCATCGGCATCATTTTCTTCAGTTAACAAAAGCTCTTCAAATCATGGTGCATCCAGGGGGCTGGAACCGACTAAAACAGAAGTCAAAGATGTGGTCATCTTGGAAAGGGATTCTATTTCCAATGGTGCAGGGAAGGATGCAAAAGATATCAATGATCAAGAAATGGAAAGGCTCAATGGGATACACATCAGCTCGAAGCCTGATCATTCTCATGAAAACTGTTTGGATACCTCAAGCCAACAATTTAAGCCAAAATCAAACTCTGTGGAGACAACATATGTGGATTGGTCTGCTGCAAAAGCTTCACACTACCAAATGGACAGAAATGGGGTTACTGGCTTTCAAGCCACTGGAACTGAAGGAAGCCATCCTGATCAAACAAGTGATCAAATGGGAGGAGCCAGCGGAACTATGAATCAATGCATCCATCCAACACTTCCTGTGGATCCAAAATTCGACGGCAATGCCGCAGCACAGCCCTTTCCTCACAACTATGCAGCCTTTGCACCAATGATGCAATGCCACTGCAACCAAGATGCCTACAGATCTTTTGCCAATATGTCATCCACCTTCTCCAGCATGCTTGTCTCCACATTGTTGTCAAACCCTGCAATCCATGCAGCTGCCAGGCTTGCAGCATCGTACTGGCCTACAGTAGACGGCAATACTCCTGATCCAAATCAAGAAAATCTTTCTGAGAGTGCTCAAGGAAGCCACGCTGGCTCTCCTCCCAACATGGCATCTATTGTCGCAGCTACAGTTGCTGCAGCATCAGCATGGTGGGCAACACAAGGTCTTCTCCCTCTTTTTCCTCCACCTATAGCTTTTCCATTTGTTCCAGCTCCTAGTGCTCCCTTTTCCACAGCAGATGTTCAGCGAGCTCAAGAGAAAGATATAGACTGCCCAATGGATAATGCACAGAAGGAATTGCAAGAAACTCGGAAACAAGATAATTCTGAAGCTATGAAGGTCATAGTGTCTTCAGAGACTGATGAGAGTGGAAAAGGAGAAGTGTCGCTCCACACTGAGTTAAAGATATCTCCAGCAGATAAGGCCGACACCAAACCTGCCGCAGGAGCTGAAACAAGTGACGTTTTTGGAAATAAGAAAAAGCAGGATCGCTCTTCATGTGGTTCCAACACACCGTCAAGTAGTGATATAGAAGCAGATAATGCTCCTGAGAATCAAGAAAAGGCTAACGACAAGGCAAAGCAAGCATCTTGCAGTAACTCTTCAGCCGGTGACAATAACCACCGTAGATTTAGGAGCAGTGCAAGCACAAGTGATTCATGGAAGGAAGTTTCTGAAGAGGTGGTCGTCTACCAGCATTCCGCATATTCACATTTATCTTACTCGCTGAACATCCATCACTGCTTTTCTAATTCACATTTCTGCTGTCAGGGTCGTCTGGCTTTTGATGCACTGTTCAGTAGAGAAAGGCTTCCCCAAAGCTTTTCTCCTCCGCAAGTAGAAGGATCAAAGGAGATTAGCAAGGAGGAAGAAGATGAAGTAACCACGGTGACGGTTGACCTCAACAAGAATGCCACTATTATTGATCAAGAACTCGACACAGCGGATGAGCCAAGAGCTTCCTTTCCTAATGAATTGTCAAACCTGAAGCTGAAATCTCGCAGGACCGGTTTCAAACCATACAAGAGGTGCTCAGTGGAAGCGAAGGAGAACAGGGTACCGGCTAGCGATGAGGTTGGTACCAAGAGGATTCGTCTTGAGAGCGAAGCATCGACATAA</dnaseqindica> 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| External Link(s) |
