Difference between revisions of "BGIOSGA028277"
(Created page with "{{IndicaGene|
GeneName = BGIOSGA028277|
Description = Probable 4-coumarate--CoA ligase 1|
Definition = Oryza sativa Indica Group BGIOSGA028277, complete gene.|
tag = 4CL1|...") |
|||
| Line 1: | Line 1: | ||
| + | Please input one-sentence summary here. | ||
| + | |||
| + | ==Annotated Information== | ||
| + | ===Function=== | ||
| + | Please input function information here. | ||
| + | |||
| + | ===Expression=== | ||
| + | Please input expression information here. | ||
| + | |||
| + | ===Evolution=== | ||
| + | Please input evolution information here. | ||
| + | |||
| + | You can also add sub-section(s) at will. | ||
| + | |||
| + | ==Labs working on this gene== | ||
| + | Please input related labs here. | ||
| + | |||
| + | ==References== | ||
| + | Please input cited references here. | ||
| + | |||
| + | ==Structured Information== | ||
{{IndicaGene| | {{IndicaGene| | ||
GeneName = BGIOSGA028277| | GeneName = BGIOSGA028277| | ||
Revision as of 17:11, 22 July 2012
Please input one-sentence summary here.
Contents
Annotated Information
Function
Please input function information here.
Expression
Please input expression information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this gene
Please input related labs here.
References
Please input cited references here.
Structured Information
| Gene Name |
BGIOSGA028277 |
|---|---|
| Description |
Probable 4-coumarate--CoA ligase 1 |
| Definition |
Oryza sativa Indica Group BGIOSGA028277, complete gene. |
| LocusTag |
4CL1 |
| Ensembl Transcript ID |
BGIOSGA028277-TA |
| Ensembl Protein ID |
BGIOSGA028277-PA |
| Length |
4279 |
| Source |
Oryza sativa Indica Group ORGANISM Oryza sativa Indica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 8:9618961..9623239 |
| Sequence Coding Region |
9618961..9620004,9620927..9621125,9622539..9622752,9622893..9622998,9623117..9623239 |
| Genome Context |
<gbrowseImage1> name=IndicaChromosome08:9618961..9623239 source=RiceIndica08 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=IndicaChromosome08:9618961..9623239 source=RiceIndica08 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>ATGGAGCAGCAGCAGCCGGAGTCGGCGGCGCCGGTGACGGAGGCGTCGCCGGAGATCATCTTCCGGTCGAAGCTGCCGGACATCGCCATCACCAACACCCTCCCGCTCCACCGCTACTGCTTCGAGCGGCTCCCGGAGGTGGCGGCGCGCCCGTGCCTCATCGACGGAGCCACCGGCGGCGTGCTCACCTACGCCGACGTCGACCGCCTGTCCCGCCGCCTCGCCGCTGCGCTCCGCCGCGCGCCGCTGGGGCTCCGGCGGGGCGGCGTCGTGATGAGCCTGCTGCGTAACTCGCCGGAGTTCGTGCTGTCCTTCTTCGCCGCGTCGCGCGTCGGCGCCGCGGTGACCACGGCGAACCCGATGTCCACCCCGCACGAGATCGAGAGCCAGCTCGCCGCCGCCGGCGCCACCGTCGTCATCACCGAGTCCATGGCCGCCGACAAGCTCCCCTCCCACTCCCACGGCGCCCTCACCGTCGTCCTCATCGACGAGCGCCGCGACGGCTGCCTCCACTTCTGGGACGACCTCATGTCGGAGGACGAAGCGTCGCCGCTCGCCGGCGACGAGGACGACGAGAAGGTGTTCGACCCGGACGACGTGGTGGCGCTGCCGTACTCGTCGGGGACGACGGGTCTCCCCAAGGGGGTGATGCTAACGCACCGGAGCCTGAGCACGAGCGTGGCGCAGCAGGTCGACGGCGAGAACCCAAACATCGGGCTCCACGCCGGCGACGTGATCCTGTGCGCGCTGCCCATGTTCCACATCTACTCGCTCAACACCATCATGATGTGCGGCCTCCGCGTCGGCGCCGCCATCGTCGTCATGCGCCGCTTCGACCTCGCCGCCATGATGGACCTTGTCGAACGCCACCGCGTCACCATCGCGCCGCTCGTGCCGCCCATCGTCGTGGCCGTGGCCAAGAGCGAGGCGGCGGCGGCGCGAGACCTCTCGTCGGTGCGGATGGTGCTCTCCGGCGCGGCGCCCATGGGCAAGGACATCGAGGACGCGTTCATGGCCAAGCTCCCCGGCGCCGTGCTCGGACAGGGGTATGGAATGACTGAGGCAGGGCCAGTGCTGTCAATGTGCCTAGCATTCGCCAAGGAGCCCTTCAAGGTGAAGTCCGGTGCGTGCGGGACGGTGGTGCGCAACGCCGAGCTGAAGATCATCGACCCCGACACCGGGAAGTCGCTTGGCCGGAACCTGCCCGGCGAGATCTGCATCAGGAGGCAACAGATCATGAAAGGTTACCTGAACAACCCAGAGGCCACGAAGAACACCATTGATGCAGAAGGGTGGCTGCACACCGGCGACATCGGCTACGTCGACGACGACGACGAGATCTTCATCGTGGATAGGCTCAAGGAGATCATCAAATACAGGGGCTTCCAGGTAGCCCCTGCAGAGCTGGAGGCCCTTCTCATCACCCATCCAAGCATTGCTGATGCTGCTGTTGTTGGGAAACAAATTGAGCCTGAAATCGGAGAAATACCAGTCGCCTTCGTGGCGAAAACCGAAGGGAGTGAGCTGAGTGAAGATGATGTCAAACAATTCGTAGCAAAGGAGGTGATCTACTACAAGAAGATCCGGGAGGTCTTCTTCGTTGACAAAATCCCCAAGGCGCCGTCAGGGAAGATCCTGAGAAAGGAACTGAGGAAGCAGCTGCAACATCTTCAACAAGAAGCTTAA</cdnaseq> |
| Protein Sequence |
<aaseq>MEQQQPESAAPVTEASPEIIFRSKLPDIAITNTLPLHRYCFERLPEVAARPCLIDGATGGVLTYADVDRLSRRLAAALRRAPLGLRRGGVVMSLLRNSPEFVLSFFAASRVGAAVTTANPMSTPHEIESQLAAAGATVVITESMAADKLPSHSHGALTVVLIDERRDGCLHFWDDLMSEDEASPLAGDEDDEKVFDPDDVVALPYSSGTTGLPKGVMLTHRSLSTSVAQQVDGENPNIGLHAGDVILCALPMFHIYSLNTIMMCGLRVGAAIVVMRRFDLAAMMDLVERHRVTIAPLVPPIVVAVAKSEAAAARDLSSVRMVLSGAAPMGKDIEDAFMAKLPGAVLGQGYGMTEAGPVLSMCLAFAKEPFKVKSGACGTVVRNAELKIIDPDTGKSLGRNLPGEICIRRQQIMKGYLNNPEATKNTIDAEGWLHTGDIGYVDDDDEIFIVDRLKEIIKYRGFQVAPAELEALLITHPSIADAAVVGKQIEPEIGEIPVAFVAKTEGSELSEDDVKQFVAKEVIYYKKIREVFFVDKIPKAPSGKILRKELRKQLQHLQQEA</aaseq> |
| Gene Sequence |
<dnaseqindica>1..1044#1967..2165#3579..3792#3933..4038#4157..4279#ATGGAGCAGCAGCAGCCGGAGTCGGCGGCGCCGGTGACGGAGGCGTCGCCGGAGATCATCTTCCGGTCGAAGCTGCCGGACATCGCCATCACCAACACCCTCCCGCTCCACCGCTACTGCTTCGAGCGGCTCCCGGAGGTGGCGGCGCGCCCGTGCCTCATCGACGGAGCCACCGGCGGCGTGCTCACCTACGCCGACGTCGACCGCCTGTCCCGCCGCCTCGCCGCTGCGCTCCGCCGCGCGCCGCTGGGGCTCCGGCGGGGCGGCGTCGTGATGAGCCTGCTGCGTAACTCGCCGGAGTTCGTGCTGTCCTTCTTCGCCGCGTCGCGCGTCGGCGCCGCGGTGACCACGGCGAACCCGATGTCCACCCCGCACGAGATCGAGAGCCAGCTCGCCGCCGCCGGCGCCACCGTCGTCATCACCGAGTCCATGGCCGCCGACAAGCTCCCCTCCCACTCCCACGGCGCCCTCACCGTCGTCCTCATCGACGAGCGCCGCGACGGCTGCCTCCACTTCTGGGACGACCTCATGTCGGAGGACGAAGCGTCGCCGCTCGCCGGCGACGAGGACGACGAGAAGGTGTTCGACCCGGACGACGTGGTGGCGCTGCCGTACTCGTCGGGGACGACGGGTCTCCCCAAGGGGGTGATGCTAACGCACCGGAGCCTGAGCACGAGCGTGGCGCAGCAGGTCGACGGCGAGAACCCAAACATCGGGCTCCACGCCGGCGACGTGATCCTGTGCGCGCTGCCCATGTTCCACATCTACTCGCTCAACACCATCATGATGTGCGGCCTCCGCGTCGGCGCCGCCATCGTCGTCATGCGCCGCTTCGACCTCGCCGCCATGATGGACCTTGTCGAACGCCACCGCGTCACCATCGCGCCGCTCGTGCCGCCCATCGTCGTGGCCGTGGCCAAGAGCGAGGCGGCGGCGGCGCGAGACCTCTCGTCGGTGCGGATGGTGCTCTCCGGCGCGGCGCCCATGGGCAAGGACATCGAGGACGCGTTCATGGCCAAGCTCCCCGGCGCCGTGCTCGGACAGGTACAATACAAGAAAAATATTTTCCTTTTTTTGGTTGAATTGGTTGTCATTTTTTGTGCGCCGTTGGATCATCCGATGGGCGGCTCGGATTCCATGTTGACTTTGGCGTCTGACGGTCAACGTGTAATCTGAGCCCTCCATTTGGCTGGTGTACAGATCCAATGGCGGGAAATCTTAACGTGTGAAGGACTCAAGAAGCCCTTCTTTTCACGTTTTTATTTAGGTTTTGATACAATATATACACAATAGGCGTTGTTTTTTTTAAAAAATAAACAAAATGGACATTACATTATTGGCTGTGTTTAGATCCAAACTTCAGTCCTTTTCCATCACATCAATCTGTCATACACATACAACTTTTCAGTCACATCATCTCCAATTTCAACCAAAATTCAAACTTTGGATCCAACTAAACACAACCATTGTTATTATTATTATAAACTTATAAAAAGGACATGAAAACAATTAATGAAACTAAGGACAGATTTCATTTCACTGACATGCTTAGAAAGTATAGTTGCCATATCTTTTTAATGTGTGTGTGTGTGTATAGAGTGGAGCTCCACTCCCACACACAAACATGATGGCATGACTATTTAATAAGCTAAGTTGGCTCAAGTCAACATCTGAGGCCAATAATATCTTTCTAGCTAGTTTATCTTTAAAAAAAAATCCTAGCTAACTGATATGATATAAAATTAGCTTGCCATTTACTCAAAAGAAAAGAAGTATTCTTATTCCCCAATGCAATAACATGGTAGTATTATTTTAAATCCCACATACATAGCACTAAATTTACCTTTGGTTTGTTCTATATGACATATATATCAAATTAGTCCTACAAAAATGTTATATTCTAAGCATGTCCAGCTAATTATGCAAATGTGGTGATGATCTTTGCTGCCCACTATGTGGCATTCAGGGGTATGGAATGACTGAGGCAGGGCCAGTGCTGTCAATGTGCCTAGCATTCGCCAAGGAGCCCTTCAAGGTGAAGTCCGGTGCGTGCGGGACGGTGGTGCGCAACGCCGAGCTGAAGATCATCGACCCCGACACCGGGAAGTCGCTTGGCCGGAACCTGCCCGGCGAGATCTGCATCAGGAGGCAACAGATCATGAAAGGTACAGAAGATCCCTGAACATCTTGGCATGTTCAACTGTTGACTTCTCAGTTATGTTTTGCCCCTGCAATAGAGAATGTACTACACTACCACTGGCCCAGATCTCTAGATCAAATCTGACTTGGAAAACATATGATAATCACCAGTGGATAACCAGCTACACAAAAAATTATACTACAAGCCATTGATCTGGATTTCTTTTTGACTATTATTAAACCTGAATTATGACAAGTAGTTGTCTGGAGATGATGTGCAATAAAACAAGGTCAAAAATATGGATGGCCCTCTCTTTCTAATGGAAGTAAAAGAAAGTGTTGCTTTGGAGAAATGATAATACATGTTGTAGTGTTGCTTTTTTATAGGGTCATTGTGCAAGAAGTCCACAGTAGGTAGGATATTGTAATCCTAATTGAGTAGATGCTCCAGCTAGCGAATTATGTTGATGCAACTTTGATGTCAAGATCTCAACTAGCGTGCACTGGCATGTCACATATCCGATGCCGTTGGTTCAAATCATTCCTAGCAATTCCATCGCGCTATTAATGTTCGCCTCCCATCTTTCGCCCTATAACTTTATAAGCCATAGCTGAAATTAAAATTTTGAAAATTAATTTTGGAGTTAATTTTGTTTTTTATGTAGTTTCTTTCCTAGTATTGGTTTTTCAATTGCTAATGGCATAAATATAAAAGTTTCACTCATAAATTAAAACGGGTTATCAGCTCTAGGCCAAACGGTAGCGCTGTTGCCAAACGATATCAATGGAATTATGCGAGTTCTTAAGGCCGTATTCACAATTATAGGTCTTTTTTTTTTTTACACAATTATAGGTCTAACAGAGTAAGGATGTTGCTGTTCGTCATTGTATTAGAGCGGAAGGTCTGAAAGGCTGAAACAATCAAACAATTGTTGTTTAATTTCCACACTACTAATATATGGCGTCCAAGACCTGGGTAAAGTTTAGAAAATGAGAGATGTCAAATTTGTCACTTTCAGTTGCATCACTGCAAATGTACTATTAAATATATATCAGTAGCTAATAGTAATTTTTCAAGTTGCAGTTTAAATGCAAATATTCCCAGCCCAAGTGACTCGCATTCAAAAAAGAAACAGTGACAGTGACAACGAAAGGTCCTTGGAATAATATCAGAACTGAAATTTTATAGCCTCATCGTCTCGCTTATACTCATAAGGGACATGGCTCATTAGTGATTTAAAACTAGTTTGTGGGTATATGTGTTCTTAGTGACTAAAAACAAATGCTAAAAAATAAATTACGATGAAAAAACCATAAAATTAAATTTTAAATTTTAAATTTTTCGCTTATGCTTATGAGTGATCACCTGTATCTAACCACCTATTCGTTGTACTAATTTCCATGAAAATTAACATGCTAAAAAAACCGTTATTTTTCAGGTTACCTGAACAACCCAGAGGCCACGAAGAACACCATTGATGCAGAAGGGTGGCTGCACACCGGCGACATCGGCTACGTCGACGACGACGACGAGATCTTCATCGTGGATAGGCTCAAGGAGATCATCAAATACAGGGGCTTCCAGGTAGCCCCTGCAGAGCTGGAGGCCCTTCTCATCACCCATCCAAGCATTGCTGATGCTGCTGTTGTTGGGTATGTCTTTAACTAGCTCCTGTTCTGAAAATGTAGTAAGGTTTAATTTGCTTGATAGATAATGTTGCAGAGTTTTGACATGGATTTGAATGAATCAGTTCTTGAAATGGCGTTTTCATGATATGATTGGCCACTTGCAGGAAACAAATTGAGCCTGAAATCGGAGAAATACCAGTCGCCTTCGTGGCGAAAACCGAAGGGAGTGAGCTGAGTGAAGATGATGTCAAACAATTCGTAGCAAAGGAGGTAAATTCCTTTACCATGGTTATTCATAGGACAAAAAGAGAACACTTTACCATGGCTGAGTATTGTTTTTTTTTTTTACTTTTCCTTCATTAAATTATTCATTTATATGTGGTTTTAGGTGATCTACTACAAGAAGATCCGGGAGGTCTTCTTCGTTGACAAAATCCCCAAGGCGCCGTCAGGGAAGATCCTGAGAAAGGAACTGAGGAAGCAGCTGCAACATCTTCAACAAGAAGCTTAA</dnaseqindica> |
| External Link(s) |
