Difference between revisions of "Os04g0440100"
(Created page with "{{JaponicaGene|
GeneName = Os04g0440100|
Description = Nonsense-mediated decay UPF3 domain containing protein|
Version = NM_001059408.1 GI:115458545 GeneID:4335928|
Length...") |
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| + | Please input one-sentence summary here. | ||
| + | |||
| + | ==Annotated Information== | ||
| + | ===Function=== | ||
| + | Please input function information here. | ||
| + | |||
| + | ===Expression=== | ||
| + | Please input expression information here. | ||
| + | |||
| + | ===Evolution=== | ||
| + | Please input evolution information here. | ||
| + | |||
| + | You can also add sub-section(s) at will. | ||
| + | |||
| + | ==Labs working on this gene== | ||
| + | Please input related labs here. | ||
| + | |||
| + | ==References== | ||
| + | Please input cited references here. | ||
| + | |||
| + | ==Structured Information== | ||
{{JaponicaGene| | {{JaponicaGene| | ||
GeneName = Os04g0440100| | GeneName = Os04g0440100| | ||
Revision as of 19:53, 22 July 2012
Please input one-sentence summary here.
Contents
Annotated Information
Function
Please input function information here.
Expression
Please input expression information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this gene
Please input related labs here.
References
Please input cited references here.
Structured Information
| Gene Name |
Os04g0440100 |
|---|---|
| Description |
Nonsense-mediated decay UPF3 domain containing protein |
| Version |
NM_001059408.1 GI:115458545 GeneID:4335928 |
| Length |
7675 bp |
| Definition |
Oryza sativa Japonica Group Os04g0440100, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 4:21919307..21926981 |
| Sequence Coding Region |
21920236..21920274,21920388..21920506,21920610..21920675,21921287..21921755,21921835..21921932 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008397:21919307..21926981 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008397:21919307..21926981 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggcggcggcgcgcgcgcacgtgaaggacccggcgcaccggaccaaggtggtgctccggaggctgccgccggcgatcgcgcagcaggccgtcgtggaacaggtcgacgcgcgcttcggcggccggtacgactggtcgtgcttccgccccggcaatgccagccaaaagaatcacagatattctcgactctaccttaacttcaagggcccagaagatgtcgttgaatttgctgaggtcttcaatggtcatgtgtttgtgaatgaaaagggtgctcaatttaaagctcttgtggaatatgcaccatcgcaacaggtccncaagtcaaacacgaagaaagatgctcgtcaaggaactataatgaaagatccggaatacttggagtttcttgaatcgatttcaaagcctgctgagcatctgccaagtgctgaaattcagctcgaaaggaaagaagctgaaagggcagctgctggaaaggaaccacctgttgtgacgcctcttatggtctatgttcgccagcaaagggcagctaagagtatggctcagagatctggaagtagtagactcagtagaaaagttgcgggtgttgttactagcagtcctagtccttctaaaaggggttctgagaagcgcaggacctctgcttcgacgcaatatgttctacgagagaatgctaaggagaagccaacttatatcttagtgccaaagagagacgagcatgcgcagagggaaaaagatgctacaagtggcgggatttctggttctgctcatgtcgcggaaaacaaaaaagagaaaattgtgcttttgaaaggaagagcaagggtcgattctaatacatctgatgtcacatctcagcagcagtcagggacccctatgaaaaatgctgcacaatctagttctaggcaagatccgcggcttgagggcagtggcagaattattaagactatactttcaaacaaggaaggacggcatgtggttacgtctcaacatgatcaggaaggtcacataattacagctgagaagcgcccaccacggattccaaacccacgttccgttgttaaagatcaggtagttgaaaatgctgagaaaaaccatttggatgacaaacatagtcatctccatggttctgggctcatcagtgaaaagactgaaagacatgctagaaatagagataggcctgatcgtggtgtatgggcccctcgtcgctatgacaaatctgcatcaggtgggacgcattcctcgtcatctgagttctcaccaatgcagcaacattctggtgaaaatttctgtcagcaagcagatggccatggagagagaaaaatagacccaaggggtcatggtggtattcgcggaggccctgtggaaaatggacatagacatgctaaccgccgtggtcctccacgtggtctgaaggagatggaaatttctgcaagcacatctgatggaaagccttcaaagagagcctctgccaactatggtgctcatgagaggcaagtgtgggttcaaaaatcaagctcggcgacgtga</cdnaseq> |
| Protein Sequence |
<aaseq>MAAARAHVKDPAHRTKVVLRRLPPAIAQQAVVEQVDARFGGRYD WSCFRPGNASQKNHRYSRLYLNFKGPEDVVEFAEVFNGHVFVNEKGAQFKALVEYAPS QQVXKSNTKKDARQGTIMKDPEYLEFLESISKPAEHLPSAEIQLERKEAERAAAGKEP PVVTPLMVYVRQQRAAKSMAQRSGSSRLSRKVAGVVTSSPSPSKRGSEKRRTSASTQY VLRENAKEKPTYILVPKRDEHAQREKDATSGGISGSAHVAENKKEKIVLLKGRARVDS NTSDVTSQQQSGTPMKNAAQSSSRQDPRLEGSGRIIKTILSNKEGRHVVTSQHDQEGH IITAEKRPPRIPNPRSVVKDQVVENAEKNHLDDKHSHLHGSGLISEKTERHARNRDRP DRGVWAPRRYDKSASGGTHSSSSEFSPMQQHSGENFCQQADGHGERKIDPRGHGGIRG GPVENGHRHANRRGPPRGLKEMEISASTSDGKPSKRASANYGAHERQVWVQKSSSAT</aaseq> |
| Gene Sequence |
<dnaseqindica>6708..6746#6476..6594#6307..6372#5227..5695#5050..5147#4174..4258#3256..3360#3088..3167#2894..2992#2691..2786#1434..1540#313..473#acctcgctctctcctctcttcctcttcccccaatctccgacagttgccaaatttcccttcccacccccaaacccaaaccccagcgacgacggcgacgacgcgcagcagacgaaagcgagcgagaggcgagagaaatcccatcgtttcccaaaccctaaccccctcctcctcctcctccagatctcggcggccgcgcggctgatgcgaggtgagccccgtccgccctagggtttgcggcggggtgcgtggtggtggtggttgggccgggggggacggggccctcctgctcgcgggggtgggggttgggtggggatggcggcggcgcgcgcgcacgtgaaggacccggcgcaccggaccaaggtggtgctccggaggctgccgccggcgatcgcgcagcaggccgtcgtggaacaggtcgacgcgcgcttcggcggccggtacgactggtcgtgcttccgccccggcaatgccaggtaacgcgcgattcctctcgccttgctccctccgtgtgcgtcgtgcgggtgcgtgcgtgcgtgcgtgcgtgtggttggggggcgtcgggggcacgtttggtctgtagctagggattgggttcgaagctgtttattagcctgcgaattgtgtacggggaggtaccaccccatgaaatttcgttagtagatttcattggctggttttgattgagtagctgtggccagcaattagcattctataatcgtgcaatttacagatacaagtttggactgtttgcctctatctagtgcatttggttatgtctagcaacaaataggttgctgtgatcaagtagttactgagttttaagtttgcaatcctaactgattgtgggccatttacagttctttcgcgttgttgtgatctcgaagcatagtggattgtgtacttcaaattgtagctaggatattttggaggtgtattttagtttattcttattagatttaatattagctgtgaccaaattattgcttggagatagtgcccaccttcttagttttgttgcataattttagctgtaagtgaactaaatgtgcttttgattgcagctagtataagtgaggtcaatatgttttttttttataaaaaaaattaccttaccttgccattttggctgctggagtaagaggttttgttctgtttgttcatttttatgcttctgtaggattgccttaagacatgctagttatagagaaaatttcctataagaaaacatgcacactgcaaaactacttggcagcattgagccttttttagtttgtgctgagtgatgtgcaacgtactgtggccattcgtatgtagctagtgattcaattgttatgtctgcaattcttaactcattgccgtggaagctaaatgatagtggcattctccacttcatttttattctcatttttctgacaatgttattgcttgtccagccaaaagaatcacagatattctcgactctaccttaacttcaagggcccagaagatgtcgttgaatttgctgaggtcttcaatggtcatgtgtttgtgaatgaaaagggtaactttcacatttatgtaccaacgtttctttttgccatgcaaatttatattcaggattcagaacttatattctgattatgtcaatgttgtcactatcaaaactagatacacatgtagcaatataagcagtgtggatctttgtacaaactaatagtgcaacatagagaatcagaatgaaattgcaattattgagcatttacatagtctttgaattggagattgatcttgtcgaataggattttgggactaaacagtaggttttgcatatttttccctattcaacttattgatgtctagtattatttttccctttttgattagtgcgcagcaaagaaaatattcaactgtaactatataaattccaatattatggaaatagtttaaattgagaaggcccaacattgttgttaccatttttggtgttattagagatatagaggtctcactgtggctgttatagcgtcaattttctaggtacttgattttgctataagtttccttttatatgttgtccaattattccattcctaagcacagagtttcctttatatctaagcttgggggcaactgtggtgtattctggtcttttctcctttactagtacagttgaatatgcattcaagctacctaagtatttgccaacatacttgtctaatgttgtgtaatgctgtgacaataaagtactatgataatactatacttctgttaggttctccaaatatatcacagtagaaattgataacctaacttgcattttggaggctggagaccatcctacaaacaccaccttttgttactatttattggttactgatgtatgttattgctattctttcttatacacttcatagcattttaacattttcagatgcctattttcagcatgctggtataattgacattcatgttaagttattttcttatttttggtattcaagttaaaaaagaggttgacttttgatggttgcaagcaagcactgcttataatgtgatatattttaggtcggaacataagttaatacttttaatgtaatcaaggtgttgagttttccttcaacagtcgagcacatgcttgtaaatttaattttggactatgcttttttgttttaaattttattgtcatgcatgcggcctatggttcctgtcaggtgctcaatttaaagctcttgtggaatatgcaccatcgcaacaggtccncaagtcaaacacgaagaaagatgctcgtcaaggaactataatgaaaggtcctagacaatcatttaatctcattctccatcctgtaggtgacacaatttcatatttatcattacttcaaacttagctggcatcttttttgggatttaatatccagatccggaatacttggagtttcttgaatcgatttcaaagcctgctgagcatctgccaagtgctgaaattcagctcgaaaggaaagaagctgaaagggcaggtaaagtattgtttgtaatatcagattataattatgcctttcaaagatgccaagcataaaagaagggtctattatcaacttgatcactattgcagctgctggaaaggaaccacctgttgtgacgcctcttatggtctatgttcgccagcaaagggcagctaagagtatggctcaggtatacgtgttcattaaactgtagtattggtttatattatattttatcaacttgagggtcggctaactagtacttccacatgttacagagatctggaagtagtagactcagtagaaaagttgcgggtgttgttactagcagtcctagtccttctaaaaggggttctgagaagcgcaggacctctgcttcgacggtaaatttcttgcttgaaaaaaatagtacaattttaaatggccacaagaggtggggcttcattttttcatgcatatattttcatagtctggtcttggatttcatgaaatgaacatatcctatgtcatgttttcttcacgaaatactactattttaaatggtcacaagaggcgggacccatctattttatttcccgataggttctttttatttcttttaatatttattgccctttctcgccatggtgttcgccctaatttcagtttgtttgtactatcgacctatgtcatgttttctttgttcaaaacaaaatcctgtccccagtgtgcatttctgtttgtgctactgtttgtgtattgtatgctcttatatgttttatactccctctgtttcatcttataagtcgttttgacttttttcctagtcaaactttgttaagtttgaccaagtttatagaaaaatttaacatctaaaatatcaaattagattcattaaatctagcattgaatatattttgataatatgtttgttttgtgttaaaaatatcattatatttttctaaagaagtttgactaaggaaaaagttaaacaacttataatatgaaatgcagggagtatattttatttctgggctattgttgtgagttttcatctattctttttcaacctttgaacagtgcactgtgtctcagtttggttattttgggtttcatgctgcattgttataaaaagtacccagttcattccgcacaaaaactatgccatgaggttatgacaagctactgtttttgtctttttttcatgtgatcttcagcaatatgttctacgagagaatgctaaggagaagccaacttatatcttagtgccaaagagagacgagcatgcgcagagggaaaaaggtactgctggaacttcaggtggtactgattcaagaaatagataatcactataactttgttgtaaccattcatatcaacatgtccttttattttattgattattactaagtatctgttctctgctataacatatccatgcctatatatgctgataaaaggttgtatcaactaatgtatagtttgagctgagttaggtaatagggtgatgacactgattgattcaattctgtgagaactgaggcaagatcaagttgatcttattatgctgtgttgcatggtgaaatctagctatatgaaacctgtacaatttaagtaaataggttaaatcttagttgtttttatgactattccaaaacaaaaactaaaaccactgcaatgctaaaagcaccatcaacatagacaagtttagtttgggcttgtttacttatttggcataatagctattgtgttgagataggcctgtggacatttgtatggctacctgccatccaattatggcaatggcgtaccttgttgggtgacatctacttttgctacactacgtcaatgtcctatcctatagaaaatggatttcattttgaacttccatcattttgtctttgcatggagttctattagtcagttacctttccaagaagtgtatagtattattcttgtcgtcttctgttagcctctatccttccaatttgtaaattgttgatgtatgctatttttgcactttctgcccatatgtcttgatgaaagttcctttttagttgttaatattgctgtttcgttcaattgtctcgtagatgctacaagtggcgggatttctggttctgctcatgtcgcggaaaacaaaaaagagaaaattgtgcttttgaaaggaagagcaagggtcgattctaatgtaagtatataagctccacgaatagtttgaccattttgttggtaactgtactgactgtcatttgatatgttttttccagacatctgatgtcacatctcagcagcagtcagggacccctatgaaaaatgctgcacaatctagttctaggcaagatccgcggcttgagggcagtggcagaattattaagactatactttcaaacaaggaaggacggcatgtggttacgtctcaacatgatcaggaaggtcacataattacagctgagaagcgcccaccacggattccaaacccacgttccgttgttaaagatcaggtagttgaaaatgctgagaaaaaccatttggatgacaaacatagtcatctccatggttctgggctcatcagtgaaaagactgaaagacatgctagaaatagagataggcctgatcgtggtgtatgggcccctcgtcgctatgacaaatctgcatcaggtgggacgcattcctcgtcatctgagttctcaccaatgcagcaacattctggtgaaaatttctgtcagcaagcagatggtaagattccttttgaagcgattttagtactgttcatttgagttcttgagttattgtattattgagggtgaatagccaattcagtccttaaacttttgctcatgggtcaaattagtccttgatgttttacgttgtccaaacaaatccctaaagattatcatgtggcttaaaacgccacatggacatgccacatcattcatgcatgtacagtcaacaattaaatatccattttacccttacattttctatagaaaaaagaaaaaaaaaaggaaaacatgaagaaagcaatcttaaaacaaaagaaaaatgacacattctttagttaccaatgcaacatctttttcttaattctttttatttatttcctatggagaatgtataagggtagaatggacattttaaatgttgaatttgcatgcacatgtgatgtggcatgtacacgtggcatttttatgggtccaaggattatattaaatcacactataaagtttggggacttattttggccaatatgaaatgtcaaggactaaattgatccttaagtgaaagttcaaggatcatgttggttattcaccctattattaattatgtgacttgatgatgcaaagcaggccatggagagagaaaaatagacccaaggggtcatggtggtattcgcggaggccctgtggaaaatggtttgtatatttagttgttgcaattatgaccatgaaaaatgatgcaaactgttctccagatcattttctgtactatggttaatactgtcaatcttcaattcaggacatagacatgctaaccgccgtggtcctccacgtggtctgaaggagatggaaatttctgcaagcacatctgatggaaagccttcaaagagagcctctgccaactatggtgctcatgaggtgtgatcagaatatagttttttattctgcctttgacatttcaagggcctatgttttgcgtgaaatgatttttattcactagatttcttataatatatgaatgttatatgtagaggcaagtgtgggttcaaaaatcaagctcggcgacgtgatcttgtccaatgatggtaaactatttgtggtccagaaattttgttttggtctttggttatcaaaacacatgcaccacaagaaaaagaattactagaagtgtgtcaccaaatacacgctaatttatttgctcttttgcagatactcatcaaaacaaatattgcaagttgtggagttctggattttgcagcttgatcctgtgaagtactgttaacaaaatgcccccgatcatatgcttccatgaagtgcaatctcagatttgtcaatcgaaatctcagctttagctgaaaagggagcttatatgatttgattcacagcaatagtgaattaacataacccactttaggtagctcttgattgctttgggtgagacttgatttgggcccaaggttgctattctggagcaatggaaggatttaggttggcatcattaccctcgtgacagtggtcacatatttctgagacccctggagaatatacacgacctcaactaatcagagatgggtgtacatatctctagagaaagaagaggtctggttctgacttctgttcgcaggttagcggtgccatgtatctacaaaagagataaaaaaaagttatcagactgcctggtttgctaaataaaagtgaattagttgatagattatgagaatccactgtttaggcggctgcgaccgtggtcaccaacagaagttaccctagagtgcaaagtggcatctcattttggttttgtgcccctgccccccctgagtaacgggatgtggtattgttttgacatgtggatgttgatggtgtgcgtcttcctgttaatgtttcaccagataattatgggggtattgttaagaatgatgatatgatgtacagcatcaaaggtgcttgctgttttaatcttgagcaagttgtcgtgcttctatgaaatgtgattgttaac</dnaseqindica> 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| External Link(s) |
