Difference between revisions of "Os05g0305100"
(Created page with "{{JaponicaGene|
GeneName = Os05g0305100|
Description = Similar to Transcription factor IIIB 90 kDa subunit (TFIIIB90) (hTFIIIB90) (B- related factor 1) (BRF-1) (hBRF) (TATA ...") |
|||
| Line 1: | Line 1: | ||
| + | Please input one-sentence summary here. | ||
| + | |||
| + | ==Annotated Information== | ||
| + | ===Function=== | ||
| + | Please input function information here. | ||
| + | |||
| + | ===Expression=== | ||
| + | Please input expression information here. | ||
| + | |||
| + | ===Evolution=== | ||
| + | Please input evolution information here. | ||
| + | |||
| + | You can also add sub-section(s) at will. | ||
| + | |||
| + | ==Labs working on this gene== | ||
| + | Please input related labs here. | ||
| + | |||
| + | ==References== | ||
| + | Please input cited references here. | ||
| + | |||
| + | ==Structured Information== | ||
{{JaponicaGene| | {{JaponicaGene| | ||
GeneName = Os05g0305100| | GeneName = Os05g0305100| | ||
Revision as of 20:07, 22 July 2012
Please input one-sentence summary here.
Contents
Annotated Information
Function
Please input function information here.
Expression
Please input expression information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this gene
Please input related labs here.
References
Please input cited references here.
Structured Information
| Gene Name |
Os05g0305100 |
|---|---|
| Description |
Similar to Transcription factor IIIB 90 kDa subunit (TFIIIB90) (hTFIIIB90) (B- related factor 1) (BRF-1) (hBRF) (TATA box-binding protein-associated factor, RNA polymerase III, subunit 2) (TAF3B2). Splice isoform 2 |
| Version |
NM_001061682.1 GI:115463094 GeneID:4338362 |
| Length |
9508 bp |
| Definition |
Oryza sativa Japonica Group Os05g0305100, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 5:13750214..13759721 |
| Sequence Coding Region |
13750744..13750805,13750970..13751051,13751133..13751208,13751284..13751369,13751562..13751638 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008398:13750214..13759721 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008398:13750214..13759721 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgtattgttctcactgtcaagataactgccccgtcgtaaaggaccctgacaaaaactacacatgttgtggtttgtgtgggaaggttcttgatgatcaggtttacgatggtgagccaactttccaaaagggcgccgacgggcaggcccggttggctggtagtattctatcaagcattgagagtggtaattcagtatcccatgaaagaactataaataaaggaagagaggagattaggcagattgtcagcagcttacatgtggctggtggagatactattattagcatggctcatcgctattatacactagctgttgacaagaattttacaaggggccgtcgaacaactcatgttgctgctgcttgcctttatattgcctgccggcaaagtaaaaaggcatatcttcttattgatttctcggaccatttgcagataagtgtttatgtcctaggtgctgtttttctgcagctttgccaagttttgctacttgcggaacatccagttatccaaaagctcatcgaccccagccttttcatacatcgttttacagaacgtttactggggaagagggacaatgccgtatcagatacggctttacgcattgtagctagcatgaagcgagactggatgcagactgggaggaaaccaagtggattgtgtggtgcagcactatatatcgctgctctctctcatggatatgattataccaaggcagatattgttgctgttgtgcatgtttgcgaggcaacactaactaagcgcttgatagagtttgaaaatacagattcgggtagcttaacgattgaagaatttttggcaaaggctgatgaacaagtgcttgttactaaaatttcaccaaagtctggagaagtactttgcaagcacaaggataaagctgagcattttgctcatggactctgtgaaaaatgctacaacaaatttatgaaactgtctggtggactggagggtggctctgatcctccagctttccaacgagctgaaaaacaaaggttggaggctgctaaaaatgctaaaggaactgctgcatctaaagaggcagcactggaatcagtttgtgaggcacgcgaatctgatgttgagaataacattacgacaccgccaaagaatataattggagataagcattcgacaattccttctgtgaaagttgctggtgattctgtagctacagaagatcctgaaggggaaggtaaaaatgataaagcagatgaaggtcctgaaagtctctctgatattgatgatgcggaggttgatgggtaccttcacaacgaggaagaaacacagtacaaaaaaattatctgggaggaaatgaataaagagtaccttgaggaacaagcagcaaaagcagcattagcagctgagctggcagctagaggagtggttgtggaagaggggaagaggaaaagaagaagacataatgaagatggcaagaacgcaacacccgctcaaacaccagcagaagcaacacagaacatgttgaagcggaagagacttggatcgaagatcaatgatgaagctgttaacaaactgtacaataccaaagatgaagatggcaaagcagataaagagatggacttcaacgatgagtatggacaggacacaggtgatggtgaaacattcgaaggtggttatgattatcctgattacaactatgatggctatggtgatggagcctacggcgattatgatggtgttgatttttaa</cdnaseq> |
| Protein Sequence |
<aaseq>MYCSHCQDNCPVVKDPDKNYTCCGLCGKVLDDQVYDGEPTFQKG ADGQARLAGSILSSIESGNSVSHERTINKGREEIRQIVSSLHVAGGDTIISMAHRYYT LAVDKNFTRGRRTTHVAAACLYIACRQSKKAYLLIDFSDHLQISVYVLGAVFLQLCQV LLLAEHPVIQKLIDPSLFIHRFTERLLGKRDNAVSDTALRIVASMKRDWMQTGRKPSG LCGAALYIAALSHGYDYTKADIVAVVHVCEATLTKRLIEFENTDSGSLTIEEFLAKAD EQVLVTKISPKSGEVLCKHKDKAEHFAHGLCEKCYNKFMKLSGGLEGGSDPPAFQRAE KQRLEAAKNAKGTAASKEAALESVCEARESDVENNITTPPKNIIGDKHSTIPSVKVAG DSVATEDPEGEGKNDKADEGPESLSDIDDAEVDGYLHNEEETQYKKIIWEEMNKEYLE EQAAKAALAAELAARGVVVEEGKRKRRRHNEDGKNATPAQTPAEATQNMLKRKRLGSK INDEAVNKLYNTKDEDGKADKEMDFNDEYGQDTGDGETFEGGYDYPDYNYDGYGDGAY GDYDGVDF</aaseq> |
| Gene Sequence |
<dnaseqindica>531..592#757..838#920..995#1071..1156#1349..1425#2193..2249#2321..2433#3236..3310#3381..3472#3658..3738#4803..4940#5017..5202#6709..6793#6905..6963#7094..7174#7256..7330#7416..7499#8613..8660#9072..9239#aaagccgccgagccgcgcggccgagtgcaaaaaggaaaaatatcggtccccgcgagctagggtttaccacccccccctcgtccacctctctctctctccgggtgcccacgccggcggcgagctctcctcaactgcgccgccgagagcccccccgccccccctgttcgtgggggaagtacaggttcgcagtgccaccctctgtgtctactagtgaagtttcagttttggactatgattttgttattatgctccattatgttgggagattgggattggggaattgaaacagtcacgtgaatccaattaggcaactaaaaaaacaaaaacaaagagagtacaaaatagggaaaggcgaaaaattgagaggcaccgcactggggatgtttgattgcttataattcaatggctgatctgtaaatgttagccatttcggcttggaaatgagtggaaaaagctaattaatcggaattttttcgcaggctgatcttagttgggggggtatactctgcggtctacttgctactccagcaatgtattgttctcactgtcaagataactgccccgtcgtaaaggaccctgacaaaaactacacgtgaggcctcccttcctgtcttttttctccttccatttcgatgcaaaatcagctagtacaaattgtttataagcatggccttgttggtcactcttaaatttctgtgtaccagctctaacacttttgtgcgcgtgtcattatgtaatttttcatatggtgatcagatgttgtggtttgtgtgggaaggttcttgatgatcaggtttacgatggtgagccaactttccaaaagggcgccgacgggcaggttgatctttcactttgcttctaatttggtttggtttatttatttttcacttctcatgttggttgttttggagctttacaggcccggttggctggtagtattctatcaagcattgagagtggtaattcagtatcccatgaaagaactataaataaaggtacgactttgaggtcattcctctatctcattttgctgccactttgtgggctaatttcatgctttgtttttccaggaagagaggagattaggcagattgtcagcagcttacatgtggctggtggagatactattattagcatggctcatcgctattatacagtatgtatctttgttactactacctccgtcccaaaatataacaacttttagctttgaatctggacacacagttgtccagattcatagctaaaaatgcttatattttgggacggagggagtagtcagtagcttataatttctaaaataatatggtacatggtgatgctgatgtttattcttgttgaagtttagctagctgttgacaagaattttacaaggggccgtcgaacaactcatgttgctgctgcttgcctttatattgcctgccggtatgctaccacctaattactttgttgatttattgaaagtcttctcactcattgtacttgttttttttctcaagcagtacctttcaatagaattatttcttgagcatgattcttttctttgtcattgaacttataaaatgcctaaactataacacagctaagctattccagactatagagcatgcatggtgaacatttgtgatgggtttgtttaatacatatatattttaccaagcacacaatctgaacattgccatgcatggccctcaaatatatcttccatgtggaaaggaatgctgtgtcctaaattttcaagcgcagagtacttaatggcctggttatgctatatctcatttttccctttaggagaacataatactccctgtaattgcaaaacaaatcctaggatttgacaccggccaaactttttaacccttgatcaatggtcatattggaaaaaataacttccatttctctagagaacatataacatccatgattgtctttatccatagaaatacatgagcatgtaggtggttatagaaactagcagtcaatgtggctcattgtagattatgtccatgtcccagatggtgtgctatatttgcaatcataggtcgtacacagtattttcattagttattgctgttcttaagttgtccagcattattttttttcctattagttcccttggatatctgttgtcaagtttcaaacttttgttgatattcattcctgacattcattatacctaatttgtgtgctaggcaaagtaaaaaggcatatcttcttattgatttctcggaccatttgcagataagtgtgtaagtgccccattctcctgcccttatcttgtagcccttagtgacatggctcatctggatttttctttcagttatgtcctaggtgctgtttttctgcagctttgccaagttttgctacttgcggaacatccagttatccaaaagctcatcgaccccagccttttcatacatcgttttacagaacgtaagccacactaaattgtattatttaaatttagcggctgaaaacacatgtgccatttcttgtgtacatctctacatttccatgcactttgaatatgcacatttggtttcttcaatgtggggagggggattgttcatgtcatgcaattataagaggctgggccaggctgttccaatgttggtacctgccacatttgccatggagaacatgttggagtgcaattctgtttggaaattgcaattacaacatgaattctgattcttaaatcataggcgctgtttgattgatttgcagaattggatcgaaattgtggtattcgagtcctgaatcaaattttactcgaaacagtcataggctcttgcatttacaccccagtgagaagtggactgatggatggaccatttgataattcttgcacaaagatttatgtagcttttgactaatttcttcaccttaatttatctaatctattcaacgtgcttttacattcttgtgaaaaaatatataacaattatttaaaatcacatatgatatttattttgaactatttgatagatttgtatatggtagagtcatgtgtagtagtcagactggggcatactatagtcaaactatctcctcgcttgtgttgctcatgtgaaggagttcaattgcaatgcaagctccatccttttatcccccccttttctgagatctttgcaaggcaatgccagaaggcaattgcttgggttagtaaggaaaccaaacatgtttagtctgattatttttgttttttgtgtcactttgttggttttatctgtaggtttactggggaagagggacaatgccgtatcagatacggctttacgcattgtagctagcatgaagcgagactggatgcaggctagcatatttttctccttccttctttaggttcttttttgtgattgtaataacttgacttatgttgcagactgggaggaaaccaagtggattgtgtggtgcagcactatatatcgctgctctctctcatggatatgattataccaaggcagatattgtaagcccaagtacttttgtctgatatacttatttagaattgtattctgaagtcttatgccctccttctgtatcagttagcatgtatcgggcacatgctacattttgtattttttataattggacatgaatatgattctatgctacagcatataatgacataaatttctgttttatgttttttaggttgctgttgtgcatgtttgcgaggcaacactaactaagcgcttgatagagtttgaaaatacagattcgggtagcttaacggtatggattctctctccaggaaattgccaaattcataggcgctgttacttaccgcatacagatgaaaatttgttgcaacgatgtatttgtaataaagatgggaatgacagcgctaagttgattgttggtacaacttttccctctgaaagtcattcttaagctgtctatgctgaaacatattgtaattactatcagtgtatggtgtctgttatggtgcaagtatttgacattactcatgacactaaagcaactattgacctaagcaagtactgattagggcagggcagcccatgtcaactagacatgcattcactttctttaccctgtccatagagctagttttaggtgcttatttttacccgttggttcagcatggtctatctggcaaaaaaattgggtattgccccctttcatgtctgttttttcatgtcatcaattcatcatccacaactgttatctactactccctccgtcccagaatataagaagttttagggttgaacacggttattaagaaagtaggtagaagtgagtggtggagggttgtgattggatgagtagtgaaggtaggtgggaaaagtgaatggtggagggttgtgattggttgggaagagaatgttggtggagaagttgtcatattttgggacggagggagtatatgaatattctttaagcaaatgaaatagtattatgctagattgtaaacgaaaatggtccttgaggtgtaaatgtgtcattgtgaagcccattaggggtccatgcaatgggcgaaggatgctgcctctgcccactactgcctaagcactgttcatggtgccttgtgctagttttatttagtttaaaaataagatgagattgaattatttatcggtttgtttccttagttttagagcaaagggcaaagggtttttgcctctatcatgcacagtacatcaggattaggattagaggtgtcttcatttcatacttaagtgattggacacatttccagctcgcattcaacgtattgtatccatgccaatttgcatttgattaaacattatattttgctgccctcttgctagattgaagaatttttggcaaaggctgatgaacaagtgcttgttactaaaatttcaccaaagtctggagaagtactttgcaagcacaaggataaagctgagcattttgctcatggactctgtgaaaaatgctacaacaaagtaacagacctttaccatgttcataatacatcagttttgggacttcattactcctgacacatgcatgactgttcagtttatgaaactgtctggtggactggagggtggctctgatcctccagctttccaacgagctgaaaaacaaaggttggaggctgctaaaaatgctaaaggaactgctgcatctaaagaggcagcactggaatcagtttgtgaggcacgcgaatctgatgttgagaataacattacgacaccgccaaaggtaatatgttcttaacatagttaagctcatgcttgttcccctatttaccatacattcttcctttgttagccaactaaataatgtgctcttttagttcattaacaagggcagaaaaaggtgacttttgatcatctagatcctgtacaagtacaacagttttgttatatgaatatgttgcattctcatgcaccacgtatatgagtataaatttacacgaaactgtatataggtcccgtttggaagtggcaatcagtaataatccgccctggattatttgttccatgcacctaaattatgattttttgaaaaactctcttatattgccttgcttagacaacttgttcctagctactactccatctgtccacaaatataagggattttgggtttctccatttgtccacaaatataagagattctggagtactttcccaatccattgaaccattgcatttgtttctcactggtagttgcatcattagatgaaatctttcccaatcaaataaagtcccgagagcatcaaagtaattccaccttatgtcacgagctccaggaagagactggattggatatgtgtgggatgtgggcggacgtggtttcgggagattggacgtgcgatgccccgtgatggcgacgctagaagaacgagatgagaaaacagagaaagtagatgagaagagtagattgaattcaagcttgatctttattgaatgaaagattgcttatataagcttatatgcaactgaattgctaattaaaagagataagaactaatgcaacaaaccggaaccaactaaacaaactcgagataagatcctattgccaagccgtactgtagcgcgtccgaatcacgccattcatgctgccgttgcgcgatctgattgatcgccctcatcacgcgccgccgttcccgtgcatcccgcattcatacgcctccgatgatatccaattctgaccatgataccttaaccttaaactctgctaaaaaaaacctagcatacttatatattttcgaactgaaggagtatttgttaagtttatttctcaaaatattaatttaccgtgttaatcaagtagatcatccatttcatttcacccgtgtttcatcactttcaaatggggccttattttgacaaaactatagttttaagacacaataccacaaagctagtatctatttagcattgaatttataaaaagaactacatatttatgttctactataaaaaaaacttcagatttagcatctcatcacaaagctatggatttataagttctattaggacaacagtgtgaggatctaactcataaaatctatatatcttttatggtctatttagttctatgatctgtggtttaatctgcagttttgttataattttgtgaaatttctgaatttgtgattttttttctctatttattaaaacatctgcatttgttatttctgttgtataccatataatgtgtttttgtaatttgaatactcaatttaacttattttgacagaatataattggagataagcattcgacaattccttctgtgaaagttgctggtgattctgtagctacagaagatcctgaaggggaaggtttgtttgttgctgtaccatcaacgatgatactccacaagaaaattcatatttccattttaggtcccttttgataagttcattcctgctgcatgcatatttcatccttaggtaaaaatgataaagcagatgaaggtcctgaaagtctctctgatattgatgatgcggaggtacttcatcctatccatgagatcacttctatatatttcatagagtaacttatttatgtcatctttagatcttgaaagataatcagttaggctctttatgatttactacagtgctactattaatttctaggttgatgggtaccttcacaacgaggaagaaacacagtacaaaaaaattatctgggaggaaatgaataaagagtaccttgaggtagctaagctgattacatagtagcataaggactttcttattttaaccacatagtgtggttctcagctggttgctttacaggaacaagcagcaaaagcagcattagcagctgagctggcagctagaggagtggttgtggaagaggggaagaggaaagtatgaaatgtttctagtgctaccaacctttctatgccgtgtgttcactgtagttcgtgattaagcatggatatttcatatgtagagaagaagacataatgaagatggcaagaacgcaacacccgctcaaacaccagcagaagcaacacagaacatgttgaagcggaaggtactaatggtcaatacaccccgatgctttgtaaggtttttcatttacttttgatggagaataggagaggctccactacatattaatttcatataagggagttatttgtaagcagtaaagaatcagaagatgattagtgcattttaattatacttcgaatcatagtttcacaagatagtttataggataagtgcatggctttattcatatccatagtatgcctactcatgagactgtcatgtggtccctgcgctcagatgttccttggcatgttatagaaaatggttgaaacttgaaactgaatggttttaaattacaatacatcaatacatggttagtccaaacatgaaaaattgcagattttattttaaattagattttttgcttccagcatgacatgctctttaaatggtctaaagagaaatctacattaaacacctacggaatgttcatctccaccttcttttggtgctttccatgttgtattaattagatctaatcatgtgcaacaaaatccaacattggttctccaacaatgaaaaaggaggggcagatgtgccaatgtttgtggtgttggtaggtgaaactaaacacctacggaatgttcatctccaccttcttttggtgctttccatgttgtattaattagatctaatcatgtgcaacaaaatccaacattggttctccaacaatgaaaaaggaggggcagatgtgccaatgtttgtggtgttggtaggtgaaacaaaggcccataagaaaggtatagaaaactgtggacatgtttgcatcatcttaattggcccataagcgaggaatttgctccaataagcccatagcaattaagcagacaccaattgaattgagtagacaccatatcttgattaagaaaacatgaacactattcagccctaaaattcctgagtctcatatatttttcgtaccgcccaccaaatgccattttccacataatccgtcggttttctagtcgtctacttttagcatttattccttgttcccatggttttcctattcatgcattttccatcttcaaaacatatggactagtagcatataaattaactaaaatctaacatataatgttgttacttgcagagacttggatcgaagatcaatgatgaagctgttaacaaactgtacaatgtatgttctctcgttttttttctttttacccactggttttataaaatatttgctgctgtgagttgaattgactattctgttatgcgctgtgatattgtcactatatccagaacaggaatgaaacaaccatgccacaagtagtgtgccaagggttctgcggacttaagctgtcttagattctttcattcagaacaagatttgttagctcttttagaattaggaatgggtcgcagggcactagtctgggtctgcgacccattcctaattcccttaacccatgaacccatgacagatgcgccttgctctaccttctgtggaattacagtcagatactactactgacttcattatggtctactttgttattttctgactgaaaatacatattgaattattgatttttgcgggcagaccaaagatgaagatggcaaagcagataaagagatggacttcaacgatgagtatggacaggacacaggtgatggtgaaacattcgaaggtggttatgattatcctgattacaactatgatggctatggtgatggagcctacggcgattatgatggtgttgatttttaatacccgatatatcaatgctgggtagaattgttacaattttatttgtgtgtgtatggcaacaattatcaattttacatgaatagttctgattagttgacgaaaacggagttaatcagtactcagtagacagtatagcagtgtagctcgttgatttctctggtgatatgttgagaagctgttgtagtaactgtattatttcattcagcgacctatacttgcaagttgtatattaaaacaggcctcgaagaaaaaggaaaattttgaatgcc</dnaseqindica> |
| External Link(s) |
