Difference between revisions of "Os05g0542800"
(Created page with "{{JaponicaGene|
GeneName = Os05g0542800|
Description = Virulence factor, pectin lyase fold family protein|
Version = NM_001062733.1 GI:115465196 GeneID:4339483|
Length = 2...") |
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| + | Please input one-sentence summary here. | ||
| + | |||
| + | ==Annotated Information== | ||
| + | ===Function=== | ||
| + | Please input function information here. | ||
| + | |||
| + | ===Expression=== | ||
| + | Please input expression information here. | ||
| + | |||
| + | ===Evolution=== | ||
| + | Please input evolution information here. | ||
| + | |||
| + | You can also add sub-section(s) at will. | ||
| + | |||
| + | ==Labs working on this gene== | ||
| + | Please input related labs here. | ||
| + | |||
| + | ==References== | ||
| + | Please input cited references here. | ||
| + | |||
| + | ==Structured Information== | ||
{{JaponicaGene| | {{JaponicaGene| | ||
GeneName = Os05g0542800| | GeneName = Os05g0542800| | ||
Revision as of 20:14, 22 July 2012
Please input one-sentence summary here.
Contents
Annotated Information
Function
Please input function information here.
Expression
Please input expression information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this gene
Please input related labs here.
References
Please input cited references here.
Structured Information
| Gene Name |
Os05g0542800 |
|---|---|
| Description |
Virulence factor, pectin lyase fold family protein |
| Version |
NM_001062733.1 GI:115465196 GeneID:4339483 |
| Length |
2847 bp |
| Definition |
Oryza sativa Japonica Group Os05g0542800, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 5:27001561..27004407 |
| Sequence Coding Region |
27001733..27001888,27001974..27002105,27002205..27002375,27002453..27002479,27002584..27002791 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008398:27001561..27004407 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008398:27001561..27004407 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggcgattcttcgtgtgtccgtgatgcggctggttgttgcggccatggctgttgcagctggtgttctcttcttctccggcgccggcgaggcgcgcgtgctcctcaccctcgacgacttcggcgccgtcggcgacggcattaccaacgacacgcaggccttcttggacgcctggaacgccgcctgcgcctcgacggagccggccgtcctcgccgtgccggccgggaagacgtaccagatctggccggtgcggctcgccgggccctgcaagaagaagctcaagctcatgatttccgggacgatcgcggcgccggcgagccccgacgagtgggcggggcgcgacccgacgaagtggctctacgtcttccgcgtcgacgacctgtccgtctccggcggcggcaccatcgacggcatgggcgccgagtggtgggcgcgctcctgcaagcgcaagaagaccaagccttgcagcacggtgtctgctcccaaggcgctgcagttcgaggagtgcaggcgggtgagcgtgcaggggatcacgatgcagaacgggccgcagttccacctgatgttcacccggtgcacggacgtcaaggcaagcttcctccgcgtcgtggcgccggagagcagcccgaacaccgacgggatccacctcaacgacaccacccatgcccagatcatggacaacctcatctccacaggagatgattgcgtgtcaatggttggcaattgctctgacgtccgagtgaaggacatatcatgtgggcctggacatggcatcagtatcggaagcttaggcaagaaccggaccactgacagaatagagaacgtgagggtggacacctgcttgctgacaaacacaaccaacggtgtacggatcaagagttggcagggagggatggggtatgctcacaacctgaggttcgagggcatcgtgatgaagaacgtctccaatccaatcatcatcgatcagtactactgtgaccaaccaacaccctgtgcaaaccagacgcaggcggtggaggtgcgcaagatcgagttcgcgggcatccggggcacgtcggcgacggagcaggcgatcaagctggcgtgcagcgacgccgtgccgtgccgggatctggagctgaggaacgtcaacctgaccatggtgggcgtcgtgccggcgtcctgcctcgccaaggcgccccacaggatgctcggcgacgccacgccggcggccagagtcggttcttga</cdnaseq> |
| Protein Sequence |
<aaseq>MAILRVSVMRLVVAAMAVAAGVLFFSGAGEARVLLTLDDFGAVG DGITNDTQAFLDAWNAACASTEPAVLAVPAGKTYQIWPVRLAGPCKKKLKLMISGTIA APASPDEWAGRDPTKWLYVFRVDDLSVSGGGTIDGMGAEWWARSCKRKKTKPCSTVSA PKALQFEECRRVSVQGITMQNGPQFHLMFTRCTDVKASFLRVVAPESSPNTDGIHLND TTHAQIMDNLISTGDDCVSMVGNCSDVRVKDISCGPGHGISIGSLGKNRTTDRIENVR VDTCLLTNTTNGVRIKSWQGGMGYAHNLRFEGIVMKNVSNPIIIDQYYCDQPTPCANQ TQAVEVRKIEFAGIRGTSATEQAIKLACSDAVPCRDLELRNVNLTMVGVVPASCLAKA PHRMLGDATPAARVGS</aaseq> |
| Gene Sequence |
<dnaseqindica>173..328#414..545#645..815#893..919#1024..1231#1634..1715#1858..1966#2114..2230#2356..2498#2553..2634#attcaaccgcaaaagcaacctagttagtacaaggcagcacatgcgctgctattagtagcagctgctaggtgtcctgctattttgttgccctgcttcctctaatcttcctcttcttcttctccttcaatcgtgtcgtgtcgtctccttgttcggttctttggtgcaggaagcaatggcgattcttcgtgtgtccgtgatgcggctggttgttgcggccatggctgttgcagctggtgttctcttcttctccggcgccggcgaggcgcgcgtgctcctcaccctcgacgacttcggcgccgtcggcgacggcattaccaacgacacgcaggtgaggtgttcgagctcggtgcaatttttttttttggtcggcgagaactctggcacgacggtgcactctgtcttttcgtgtctaggccttcttggacgcctggaacgccgcctgcgcctcgacggagccggccgtcctcgccgtgccggccgggaagacgtaccagatctggccggtgcggctcgccgggccctgcaagaagaagctcaagctcatggtacgtacgtgcttgccccgtgtcgcgccgcgcgccggcggcggcggcggcgttcgtctgttcgattcgatgacgcgagctgcattgtgtttgtgacagatttccgggacgatcgcggcgccggcgagccccgacgagtgggcggggcgcgacccgacgaagtggctctacgtcttccgcgtcgacgacctgtccgtctccggcggcggcaccatcgacggcatgggcgccgagtggtgggcgcgctcctgcaagcgcaagaagaccaaggtaacaacaacaaccaattcgccattgttaaccatcaaagcatcatctgaacgtttgctcttcttgcgttcttgcagccttgcagcacggtgtctgctcccaaggtgagcgagagcgaacgctcctccattccggccgccggagtacggtcgccggcggcgaccgtgactgattcttctctctgcgattgcattgcattgaattgcaggcgctgcagttcgaggagtgcaggcgggtgagcgtgcaggggatcacgatgcagaacgggccgcagttccacctgatgttcacccggtgcacggacgtcaaggcaagcttcctccgcgtcgtggcgccggagagcagcccgaacaccgacgggatccacctcaacgacaccacccatgcccagatcatggacaacctcatctccacaggtcagtgtgctgtgcatgccaatgccatgacaaaattcggaatgtacttgcttgcaagcttggactaatcttcagtttcagatgctgactttctgagacagtgtgtcagtgtctctcctacttctggtcaaactaattcagctatctgattccatttttcgcattttgttattcaagataagatcaaatccgccaagtcggcgcccaaaatcgaataattgacctggaaaaggaatacttgaaagttgttaaattaatgtagttgattgataagagatcaggtcatacattgctgctcttggtcagaatcttgggcttcctttgaagtttgaagcaggcagtgattaccgctgatatttggatgattggttaattaatctgctgtttaatcactttcttcaggagatgattgcgtgtcaatggttggcaattgctctgacgtccgagtgaaggacatatcatgtgggcctggacatggcatcaggttgcagtactttccaggattccatgccagtctttgcccatgatctctgatcagtataacaatagatttttctgtttctaaagaggattctgttactggaactgccaatgtcactgacacgtggcacttgtttgattgacagtatcggaagcttaggcaagaaccggaccactgacagaatagagaacgtgagggtggacacctgcttgctgacaaacacaaccaacggtgtacggatcaagagttggcaggttagttgcaggacatcacacttctgaattctcacaagaacaatctgatgaggggaaaaaacacttgcagttcttggttctgacaagaacaatctattcagaaaaaggagtaattatatgacaaaatgcaactttgtgcttgatcagggagggatggggtatgctcacaacctgaggttcgagggcatcgtgatgaagaacgtctccaatccaatcatcatcgatcagtactactgtgaccaaccaacaccctgtgcaaaccaggtaataatctgcattttcacctgcaaagcatcgtatcatctctgaaactctgaacttttgccattgttcagagcactagttcatcatctctgaaacttgggaatttttcgtctctgtggatgcagacgcaggcggtggaggtgcgcaagatcgagttcgcgggcatccggggcacgtcggcgacggagcaggcgatcaagctggcgtgcagcgacgccgtgccgtgccgggatctggagctgaggaacgtcaacctgaccatggtgggcggcggcgcggcgtcggcgttctgccacagggcgtccgggaaggcggccggcgccgtcgtgccggcgtcctgcctcgccaaggcgccccacaggatgctcggcgacgccacgccggcggccagagtcggttcttgatcgccgccggcaatgcccgatcctggcaacgatcaccggaaaaaagctgaagtataaataccgtacacgtaggtgtagaaactgttgccgtatttgggagagtgtatgagtacagagagttgtaagctgtatacgacgtttgtgtcaagaattttttagagggcattatgtgaagttaaaatggatacaaaaaaacataattttaccggagtt</dnaseqindica> |
| External Link(s) |
