Difference between revisions of "Os08g0116800"

From RiceWiki
Jump to: navigation, search
(Created page with "{{JaponicaGene| GeneName = Os08g0116800| Description = Exoribonuclease domain containing protein| Version = NM_001067391.1 GI:115474518 GeneID:4344519| Length = 4424 bp| ...")
 
Line 1: Line 1:
 +
Please input one-sentence summary here.
 +
 +
==Annotated Information==
 +
===Function===
 +
Please input function information here.
 +
 +
===Expression===
 +
Please input expression information here.
 +
 +
===Evolution===
 +
Please input evolution information here.
 +
 +
You can also add sub-section(s) at will.
 +
 +
==Labs working on this gene==
 +
Please input related labs here.
 +
 +
==References==
 +
Please input cited references here.
 +
 +
==Structured Information==
 
{{JaponicaGene|
 
{{JaponicaGene|
 
GeneName = Os08g0116800|
 
GeneName = Os08g0116800|

Revision as of 20:43, 22 July 2012

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os08g0116800

Description

Exoribonuclease domain containing protein

Version

NM_001067391.1 GI:115474518 GeneID:4344519

Length

4424 bp

Definition

Oryza sativa Japonica Group Os08g0116800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:935011..939434

Sequence Coding Region

935273..935359,935440..935589,935683..935771,936043..936163,936265..936367
,937032..937110,939226..939385

Expression

GEO Profiles:Os08g0116800

Genome Context

<gbrowseImage1> name=NC_008401:935011..939434 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:935011..939434 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcggcggcggcggcggctactgatgggacgtactctccggcggcggccgcgggggaaaagcggagggagaggaaggaggagctgcggcgccacctcgccgaggacgccgactggccccgcgccgacggccgctccttccacgactgccgtcccgcatttatgcaaacaggaccaacaactgccgcatcaggatctgcttatgcagaatttgggaagacaaaggtcattgtgtcagtgtttggaccaagagaaagcaagaaagcaatgttgtacagtgataccggtagactcaattgcaatgtgagctacacaacatttgccacccctatacgtggacagggaatggacaacaaggagtactccgcaatgctccataaagccctggaaggcgcagtgatgctacacacttttccaaaaaccactgttgatgtctttgcgttggttcttgagtctggtggcagtgatcttcccatcattatttcttgtgctagtcttgcgttggctgatgccggaatcatgatatatgaccttgttacatcggtatctgtgtcctgtttcgggaagaacattatcatcgatccaacctctgacgaggaagcatggcaagacggcagcattatggtggcgtacatgccagcccgcaaggagatcactcagctaacacttactggagagtggtctgatggcaaaatcaccaatgcggtagagctctgcatggatgcttgtagtaagctctgtgacatactacgggagcgcttgaaagatgctgccagcttggctgagtga</cdnaseq>

Protein Sequence

<aaseq>MSAAAAATDGTYSPAAAAGEKRRERKEELRRHLAEDADWPRADG RSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNCNV SYTTFATPIRGQGMDNKEYSAMLHKALEGAVMLHTFPKTTVDVFALVLESGGSDLPII ISCASLALADAGIMIYDLVTSVSVSCFGKNIIIDPTSDEEAWQDGSIMVAYMPARKEI TQLTLTGEWSDGKITNAVELCMDACSKLCDILRERLKDAASLAE</aaseq>

Gene Sequence

<dnaseqindica>4076..4162#3846..3995#3664..3752#3272..3392#3068..3170#2325..2403#50..209#aaaaaaccgagcgagctgcgctactaggcaatacacgcagtttccggcgatgtcggcggcggcggcggctactgatgggacgtactctccggcggcggccgcgggggaaaagcggagggagaggaaggaggagctgcggcgccacctcgccgaggacgccgactggccccgcgccgacggccgctccttccacgactgccgtcccgcatgtaaatgcctcgtccaccttctcaacctgctcccatttctctttctgctctgccctgaatgtctgatttagtgacgaccttcatcgaacgcgcccacccattcgtgctgaagggtcccggttaagcaacatttttctgccatcgcctggtctgtgcttgaggtgttcgacgttatgcgtgagtagtactgacaacggcagttccatgtcctcagtggcagagccaggatgctgctgatggtggtctgggcgaaatattcccactgtcaaatgctttcttttactctttaagacatcgtccaacgtgaatatactagtatgtcttaggcattgttgactaaatcgaaggaaaatagaactacattggcgctctctatctgagcaggggattgaggaatactttttgttggttttctgagctggagcacttcacaaacagcagtctaggtattcttcatgccacagtatctacaagtgtagatttacaaatagaatgtgaccaaaatagttttgagtgaaaaatcaaaccgttatacctctctaagcttaagtgcacgttgctcatgttccagagttcacaagttgaagtttcctttctgaactttcatttagtgtgtgcttttcaattaacaaaagcatgcgcttgacgcaatttctcccgagtgttctaaggtgtttgttgctcaaggcatactgtcagagatatgggcccgggggtatgcgaagtgaggggaatctaccttcccatcctgacacgtgtccctacagcctggtcctgtccccgcattccgcgaaccgcaggagcggccggggggtcggggcctcggggtgccacgtcatgcccctcgggcccttgcactgctttgccccgaggctcttgcccagccgccgtgtggcggggggagcaagcaaggagggggcccaggctgaacttcctttaatgcgcgcagcgccccaactgtcccctgtcgcatttaatgcagtggggcatacgtgcggcgtgctaaactgacgcgcgatggtcaagaatgaccggtctgacgccggtcacgtctgactggacggacaaccgtgctcccacgtcgcatctgcttccggcggagtggaggtaggtatgacccgtcccatcggggggtcattcggacggcggccaccacaagtcttcacctattaatgagggaatgacagggctgtcccccgtgtcaggcgagggacggcgctgggccccgctcaaggacaagctgtggtttaccttctaggcgaaggcacgggtcgagttccagtcaagatagggtgggtccccacccgaaagaagagtaggtagaggcggtgcatgtggtatccccttgaggtataaaaggaggaccttgcccaccgagagaggggacgactctcagaaaacctgagcttgtggaggagggaagtaagagtgttctcccgagtttaggaacccttgtaactctcagtctaaatcccatacacaggagtagggtattacgcttcatagcggcccgaacctatataatttggttgtgtgcgagctagctaggagccttggggacggatacgcgatttctagaggcgagcttcttcccccggccgaactcacgaaaggggggtctcacgatctcccgctagagaggatcactcctcgacacatacccatctattattttcgagcatgtttgctgttaattacataaaagcaaatgctgctgcatgttacatgtcatgtgtgtctgattgcaatagggcagtgcagcatctggaccagtataggcaagcttaggaaaaaactcttgaatttagataggattttacaacatgcatctatgatactaccaaccttgaagaaagagcaaaattttgttttcatgtatgagaattatggtctatgttacatgattgcagaatcttctttgataaattttctgaaactgtgtttcactatcgctatttctttctcaattttgacttgaatggttccacaaagtgttctaccatcgctggaatttgacttgaagctagtgggactctcagttgtcaatcagagtcgataatataatttgattcagttgtcaatcagagtcaacaataaatttgatttggcttgcagttatgcaaacaggaccaacaactgccgcatcaggatctgcttatgcagaatttgggaagacaaaggtcattgtgtcagtgtaagtataattgcacttttatacaatcatgtaccacatgtatgtatatttgtggtttagtttagattccaagtgttaaagaacatgtctttcattagatcccaatgtgaaagctgtctcttataaattcaacttcctactaaaacataatagtttccattatgatattccaaatctatcctccaactatcattctaaattcgaattttgaaaagattttggcatttgtggaaccaaatgctagaaagttaaggtcaactgaaatatgtttacacttcacagcttctttctgtgaacttgaaatacacttaaaagttactaaatgcttgagaacatttcatactcgcttggattcatgtatcaatatgttctatgcatctatcagttgagcgtgctaacatttatcagtattttataaactcgtgctcttatgacttttgagggtttcagctctatggttagccctttctcaagggaccccaaataagaatgacaacgatagtttgaaggcattgaggctgacctttaatatgtatttcctagcttcatgttacataagtttcacatatcttgtcagtcaaactcttcatattgtttattcctgttgaatttgtcttattactctgcttgcttggtcatgtttatttgatgagcaatttctcaggtttggaccaagagaaagcaagaaagcaatgttgtacagtgataccggtagactcaattgcaatgtgagctacacaacatttgccacccctatacgtggacaggtctgctgttttactagctctccgttgtctctttgaacaaatttcttactggaccatttatgcttcgaaataaatgttgaaagtctgcatcttcattccagggaatggacaacaaggagtactccgcaatgctccataaagccctggaaggcgcagtgatgctacacacttttccaaaaaccactgttgatgtctttgcgttggttcttgagtctggtggcagtaagatactatccttgaatttgattatgatattgctgcatttgatatgcttgtgctgttttagtgtagtacactgtagttacttattttaggaagaattatgacctgaacttaaactttgtgaactagtataatatgatggcacaagaacgtcttccatattttttgaaagaagccttcatatcatcatgagttatttccaagaaactttatttctttacagaaaagaattgaactacttccattcatactggaaatactttgatttcaggtgatcttcccatcattatttcttgtgctagtcttgcgttggctgatgccggaatcatgatatatgaccttgttacatcggtatctgtggtatggccacacattctctccgctttacagtgcgtacacttaaaaactcgacatttgaatttgaagacaatccactctttgcttctttgtcagtcctgtttcgggaagaacattatcatcgatccaacctctgacgaggaagcatggcaagacggcagcattatggtggcgtacatgccagcccgcaaggagatcactcagctaacacttactggagagtggtctgatggcaaaatcaccaatgtgtgtgtctttcctgttacatcaacatatgatactaaaacagtatgaattactaacattttgcttccttccatcaataggcggtagagctctgcatggatgcttgtagtaagctctgtgacatactacgggagcgcttgaaagatgctgccagcttggctgagtgaataattgctttagcagcgagatgtccaagacttaaaacatatccttagctgtacaaattttgtaggcaagggaggaggctaaggcctgatgtttgcgagattacatgattatgctgattgtttacttcatggcaaagcagctaattgttctgagagaaagtagcatggtttgtatattgttttgtactcctgaccttcagacttgtaaacattgggatgatgcattgacgcggcactcctgtcgttattcgtttcatgtatt</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0116800, RefSeq:Os08g0116800