Difference between revisions of "Os09g0252800"
(Created page with "{{JaponicaGene|
GeneName = Os09g0252800|
Description = Similar to E3 ubiquitin protein ligase URE-B1 (EC 6.3.2.-) (Upstream regulatory element binding protein 1) (Fragment)|...") |
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| + | Please input one-sentence summary here. | ||
| + | |||
| + | ==Annotated Information== | ||
| + | ===Function=== | ||
| + | Please input function information here. | ||
| + | |||
| + | ===Expression=== | ||
| + | Please input expression information here. | ||
| + | |||
| + | ===Evolution=== | ||
| + | Please input evolution information here. | ||
| + | |||
| + | You can also add sub-section(s) at will. | ||
| + | |||
| + | ==Labs working on this gene== | ||
| + | Please input related labs here. | ||
| + | |||
| + | ==References== | ||
| + | Please input cited references here. | ||
| + | |||
| + | ==Structured Information== | ||
{{JaponicaGene| | {{JaponicaGene| | ||
GeneName = Os09g0252800| | GeneName = Os09g0252800| | ||
Revision as of 20:55, 22 July 2012
Please input one-sentence summary here.
Contents
Annotated Information
Function
Please input function information here.
Expression
Please input expression information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this gene
Please input related labs here.
References
Please input cited references here.
Structured Information
| Gene Name |
Os09g0252800 |
|---|---|
| Description |
Similar to E3 ubiquitin protein ligase URE-B1 (EC 6.3.2.-) (Upstream regulatory element binding protein 1) (Fragment) |
| Version |
NM_001069222.1 GI:115478183 GeneID:4346522 |
| Length |
7440 bp |
| Definition |
Oryza sativa Japonica Group Os09g0252800, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 9:4592240..4599679 |
| Sequence Coding Region |
4592241..4593479,4593565..4593882,4594465..4594663,4594837..4595102,4595188..4595474 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008402:4592240..4599679 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008402:4592240..4599679 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>tcagatattcctttttacatgttagatgctgggttgccacctgaaacttctgctccggtttttggcgagcgtgttgtaagtactgctcccccacctttgattgatttctctcttggtatggaatctctccgaattaggcggggccttggagataatttatggactgatgatggtcaacctcaggcaggtaatcatgcagctgctgttgcccaggctttggagcatcattttattacagagttgaatgtgtctacttttctaaataatgcaattccatacactggcaatcgtgtgcttgatatgcaacctgaccaaactggcgatgatgtagatgacgatttaccatcacaggatgatgacatatcagaacatgtgacaactgattcccctgctttgcctactagtagccctcaacaatttggaactaccaaccaagcaaacggtaatgtctgtcctatgaatgatctaatttgtcaacagtcagctgatgttgcagatgttcgtactgaagaagagatgcatcaaatagctgatgacatgaatgttatacctcagagtaatgaggatactgctgacagacagcatgttgctcatcctgatagggactcactgtctggtaatctgcaaagttatgatcatgttatgcaggatgaggtagaaatacctcaacgtggccagattggtaatgatattagggacccatctgatctggagtcaagttgtcatgctcttctcacttccacaagtgcagctcctgagctgagcgatgctcatgttgattccaccactatgaatacagatgttgacatgaatagcattgatatttctgagaaccaagtagaaaactcagctcctggtttgtatggcaatgttgtttctgttaggctagacgaaggagctcctcaagagactatgcagcctgatcaattgaatgctaacaatgaggcatctagtacaaatgaaatcgatccaacatttcttgaagcattgcctgaggatctccgtgcggaagtccttgcttctcaacagaatcgcgctgcaccaactgcttcctatactccaccagctgcagtagaaatagatcctgaatttttggctgctctccccccagaaatacaagctgaggttttggctcagcagcgagcacagcggatcgctcattctcaacccattgggcagccagttgacatggataatgcttcgattatagcaactttcccccctgatctacgcgaagaggtgcttttgacctcgtcagaggcagttttgtctgccttaccttcagctttacttgctgaagctcaaatgcttcgcgacagagagttgagtcgttaccgtgctaggggaagcctttttggaggaagttacaggcttggagcgaggaggttaccaacagacaatcagactgctgttatggacaggggtgttggtgtgactgttggtaggcgggttatttctactgtgtcggcaggcgctaagggtaaagatgtggaagggaccccacttttggattctagcgctctaaaagcacttattcgtcttctgcagctagctccgccactcagcaaaggccttcttcaaaggcttatgttcaatctttgcgcgcacagtgttacgcgtgctacattgattggccatttactcaacattattaaacctgaagctgaggggcttaatggatgggactgcatgactacatataggttacatggatgtcagtggaacattgtttatgcacaaccacaatctgcaaatggtctacctccgctggtgacaagacgacttcttgaagtgcttacataccttgcttcaaaccatccatctgttgcaggtctcttggtctactttgacccttcaacaagttcaaactgtatgatcctaaagcatggtaaagaattatctcaagaagggctacaatcggatatgatgaaaacgtcatctgagggttatacccctatcctgctattccttaagctcttaaacaagccgttgtttctacgaagtcgagtatatcttgagcaggtgatgtgtttgcttgaagtagtggtcagcaatgctgcttccaaagtcgattatccacctcattcagggcaaatggttagcacttctgtggatgaaaacagggcaccgattgaaacacatggagaaccatctactatggagcaagttcctatccaagaaaatagtcaaaataaagatgtggtggtgccagcatcaggtccccaacagtctattaatgtgcatgacattcttactcaacttccagactctgaattacataatctgtgcaatattcttgcacttgagggtcttccggataaagtctatacgcttgctgcggaggtggtaaaaaaattggctagtgtggcggtatcccaccggaaattcttctctatggagctagccagtgctgctcagagcttaagttcttcagcagtagaggagcttgtaacattgaagaacacacaaatgcttgggctcaattcttgttctatggctggggctgccatcctgcgggtcttacaggtcctatctacattgacctcagatatgagtggtaatagccaggatcaggctgtgggacaggaagaacagtctattttgtgggatttgaatatatcacttgagcctttgtggcaagaactaagtgactgtataagcactacagaggcaaaacttgttcataattcaagtttcaatccccaggttcctttgatggatgcaatagaagttggtgcctcatcctctacttccccacctcttcctccaggcacacaacgccttttgccatttatagaatccttttttgttctgtgtgagaagcttcaaacaagccaagcagttgtgccatctgattccaatgtgactgctacagaagtgaaagaacttgctgggagttcatcgtccccatcactaaagactggtggagtatgcaatattacttttgtaagggtggcagaaaaacatcggcgcctcctcaatgtgttcattcgacagaatccaagtttgctagaaaagtcactttctatgatgttgaaagtaccaaggctgatagactttgacaacaagcgtgcttactttagatcacgcattaggcagcaacatgatcagcatctttctgctcctttgcggattagcgttcgtcgggcatatgttttggaggattcatacaatcagttgaggttacgtcgtagccaggatcttaagggccgcttgactgtgcaattccaaggagaggaggggattgatgctggtggactaactagggagtggtatcaacttctatctagagttatttttgacaaaggagctctgctcttcaccactgttgggaacaatgcaactttccagcctaaccccaactcagtttatcaaacagagcacctttcctatttcaagtttgttggtcgagtggttgccaaagccttatttgatggccaattattggatgttcactttacccgttcattttacaaacacatacttggtgttaaagtgacttatcatgatatagaggctgttgatcctgattactacaaaaatttgaagtggatgctagagaatgatgtaagtgatattcctgacctgacattcagcatggaccctgatgaagaaaaacatattctttatgagaaaaatgaggttactgattatgagctcaaacctggtgggagaaacatcagggtcactgaagaaacaaaacatgagtatgtcgatcttgtggctgaacatatattgaccacagcaattcgccctcaaattaatgctttccttgaaggattcacagaattagttccaagggagctcatttccctatttcatgataaagaacttgaactcttgatcagtggacttcctgaaatcgactttgatgacctgaaagcaaatgcggagtatattgggtattcgcctgcatctccggtcatcctgtggttctgggaagtagttaatggtttcagcaaggaggacatggcaagatttctacaatttgtgacaggaacatcaaaagtaccattagaaggtttcaaagcgctacaaggtatttctggtcctcagagattccagattcacaaggcttatggagctccagagaggcttccatctgcccatacttgctttaatcaactggatttaccagagtattcctcaaaggagc</cdnaseq> |
| Protein Sequence |
<aaseq>SDIPFYMLDAGLPPETSAPVFGERVVSTAPPPLIDFSLGMESLR IRRGLGDNLWTDDGQPQAGNHAAAVAQALEHHFITELNVSTFLNNAIPYTGNRVLDMQ PDQTGDDVDDDLPSQDDDISEHVTTDSPALPTSSPQQFGTTNQANGNVCPMNDLICQQ SADVADVRTEEEMHQIADDMNVIPQSNEDTADRQHVAHPDRDSLSGNLQSYDHVMQDE VEIPQRGQIGNDIRDPSDLESSCHALLTSTSAAPELSDAHVDSTTMNTDVDMNSIDIS ENQVENSAPGLYGNVVSVRLDEGAPQETMQPDQLNANNEASSTNEIDPTFLEALPEDL RAEVLASQQNRAAPTASYTPPAAVEIDPEFLAALPPEIQAEVLAQQRAQRIAHSQPIG QPVDMDNASIIATFPPDLREEVLLTSSEAVLSALPSALLAEAQMLRDRELSRYRARGS LFGGSYRLGARRLPTDNQTAVMDRGVGVTVGRRVISTVSAGAKGKDVEGTPLLDSSAL KALIRLLQLAPPLSKGLLQRLMFNLCAHSVTRATLIGHLLNIIKPEAEGLNGWDCMTT YRLHGCQWNIVYAQPQSANGLPPLVTRRLLEVLTYLASNHPSVAGLLVYFDPSTSSNC MILKHGKELSQEGLQSDMMKTSSEGYTPILLFLKLLNKPLFLRSRVYLEQVMCLLEVV VSNAASKVDYPPHSGQMVSTSVDENRAPIETHGEPSTMEQVPIQENSQNKDVVVPASG PQQSINVHDILTQLPDSELHNLCNILALEGLPDKVYTLAAEVVKKLASVAVSHRKFFS MELASAAQSLSSSAVEELVTLKNTQMLGLNSCSMAGAAILRVLQVLSTLTSDMSGNSQ DQAVGQEEQSILWDLNISLEPLWQELSDCISTTEAKLVHNSSFNPQVPLMDAIEVGAS SSTSPPLPPGTQRLLPFIESFFVLCEKLQTSQAVVPSDSNVTATEVKELAGSSSSPSL KTGGVCNITFVRVAEKHRRLLNVFIRQNPSLLEKSLSMMLKVPRLIDFDNKRAYFRSR IRQQHDQHLSAPLRISVRRAYVLEDSYNQLRLRRSQDLKGRLTVQFQGEEGIDAGGLT REWYQLLSRVIFDKGALLFTTVGNNATFQPNPNSVYQTEHLSYFKFVGRVVAKALFDG QLLDVHFTRSFYKHILGVKVTYHDIEAVDPDYYKNLKWMLENDVSDIPDLTFSMDPDE EKHILYEKNEVTDYELKPGGRNIRVTEETKHEYVDLVAEHILTTAIRPQINAFLEGFT ELVPRELISLFHDKELELLISGLPEIDFDDLKANAEYIGYSPASPVILWFWEVVNGFS KEDMARFLQFVTGTSKVPLEGFKALQGISGPQRFQIHKAYGAPERLPSAHTCFNQLDL PEYSSKE</aaseq> |
| Gene Sequence |
<dnaseqindica>2..1240#1326..1643#2226..2424#2598..2863#2949..3235#4375..5479#5561..5707#5807..5887#5976..6201#6283..6422#7200..7306#7400..7440#ttcagatattcctttttacatgttagatgctgggttgccacctgaaacttctgctccggtttttggcgagcgtgttgtaagtactgctcccccacctttgattgatttctctcttggtatggaatctctccgaattaggcggggccttggagataatttatggactgatgatggtcaacctcaggcaggtaatcatgcagctgctgttgcccaggctttggagcatcattttattacagagttgaatgtgtctacttttctaaataatgcaattccatacactggcaatcgtgtgcttgatatgcaacctgaccaaactggcgatgatgtagatgacgatttaccatcacaggatgatgacatatcagaacatgtgacaactgattcccctgctttgcctactagtagccctcaacaatttggaactaccaaccaagcaaacggtaatgtctgtcctatgaatgatctaatttgtcaacagtcagctgatgttgcagatgttcgtactgaagaagagatgcatcaaatagctgatgacatgaatgttatacctcagagtaatgaggatactgctgacagacagcatgttgctcatcctgatagggactcactgtctggtaatctgcaaagttatgatcatgttatgcaggatgaggtagaaatacctcaacgtggccagattggtaatgatattagggacccatctgatctggagtcaagttgtcatgctcttctcacttccacaagtgcagctcctgagctgagcgatgctcatgttgattccaccactatgaatacagatgttgacatgaatagcattgatatttctgagaaccaagtagaaaactcagctcctggtttgtatggcaatgttgtttctgttaggctagacgaaggagctcctcaagagactatgcagcctgatcaattgaatgctaacaatgaggcatctagtacaaatgaaatcgatccaacatttcttgaagcattgcctgaggatctccgtgcggaagtccttgcttctcaacagaatcgcgctgcaccaactgcttcctatactccaccagctgcagtagaaatagatcctgaatttttggctgctctccccccagaaatacaagctgaggttttggctcagcagcgagcacagcggatcgctcattctcaacccattgggcagccagttgacatggataatgcttcgattatagcaactttcccccctgatctacgcgaagaggtatggtttactcaatttgaagtgtttccactctgctttgtcgtatttgaactttaataatgttgacctatgctacttcattcaggtgcttttgacctcgtcagaggcagttttgtctgccttaccttcagctttacttgctgaagctcaaatgcttcgcgacagagagttgagtcgttaccgtgctaggggaagcctttttggaggaagttacaggcttggagcgaggaggttaccaacagacaatcagactgctgttatggacaggggtgttggtgtgactgttggtaggcgggttatttctactgtgtcggcaggcgctaagggtaaagatgtggaagggaccccacttttggattctagcgctctaaaagcacttattcgtcttctgcagctagctccggtaatttctatattgttctcatattagctgtgaactggtgtctctttttcttaatcatttggacatgatttattctcaacaagttctacattatcctgcttgctttgtcttctgttttctctgcaacatcacatttatgataattgataagagtagatttttcaataagttagtgatgtattcatctaccatctcgcaagatattcacgataataaaagggagatttttttaaaattagtcagtggcgaaagcaagatacacatgccacaagtggtattatcattccttagtagcaaaaataaaaatttcctattgttgcatgtgaattttattttcctaatgagtggcaaaagtgagaagtattttcatgttatgtggcaaaaataaaggtctgtggtggcaaaaacaacatttccctaacaaaaacaggatgttttcttatgcagaaaacatttccctaataagttaagagacaacagtatattgagaattgcccccatacattgtgtgtgttttcttcttttcttttgcagtagcttgttgcatttccagctgttctgttttaacttctctttttgcagccactcagcaaaggccttcttcaaaggcttatgttcaatctttgcgcgcacagtgttacgcgtgctacattgattggccatttactcaacattattaaacctgaagctgaggggcttaatggatgggactgcatgactacatataggttacatggatgtcagtggaacattgtttatgcacaaccacaatctgcaaatggtaatgtttttctctatatatgttgcaattttgattcttggtagttgttttctgaatggttcttgattcttcctataatattctgttttatctttgtcctttttgggttgtttgttatcttattcaatagtgctaccactgtattaataatatactttgctacttctgtacaggtctacctccgctggtgacaagacgacttcttgaagtgcttacataccttgcttcaaaccatccatctgttgcaggtctcttggtctactttgacccttcaacaagttcaaactgtatgatcctaaagcatggtaaagaattatctcaagaagggctacaatcggatatgatgaaaacgtcatctgagggttatacccctatcctgctattccttaagctcttaaacaagccgttgtttctacgaagtcgagtatatcttgagcaggtatttctcggaatttgttatacagagccataggcctagactatttcgtcatataattatccgtaattctgttattttcctttaggtgatgtgtttgcttgaagtagtggtcagcaatgctgcttccaaagtcgattatccacctcattcagggcaaatggttagcacttctgtggatgaaaacagggcaccgattgaaacacatggagaaccatctactatggagcaagttcctatccaagaaaatagtcaaaataaagatgtggtggtgccagcatcaggtccccaacagtctattaatgtgcatgacattcttactcaacttccagactctgaattacataatctgtgcaatattcttgcacttgaggggttagtttttcaccctgccaattatgctagaaaatcgattgctttcaattatgtcagatatgctttgatttctttggtctgaaaattattttccaagggcagtgtgggaatagataatgttttttttcctgatggaaatacaggaagttggttctgtataggtgtataaaattaggccactgaactttcacatacatgaaactatattttgtcactaagaatagctgaattccttaataatggatattagactacctccccgaatataaggataattacataggcaaaatcccttctgtttggggatggaggtagtactagatacaaataaaaaatgatttcagtataggatattgttcattgttcttgtttattgtaatcaaggttccatttgatgacatgtgattgaacattccgctccagaaaatttgatatttttctgttgtttcttttgcaaaatataatagagcagtgttagtgtatgataattatattggttgtctgtcgacacttgttagtactgagttactgactaatctagggattgccatacatggtatgagtaattgagagattttgtttcacaggtatgttactagtagaatacttcctccgtttcataatgtaagtcattctagcatttcccatattcatgttaatgaatcttgtctagattcattaacatcaatatgaatatgggaaatgctagaatgacttacattgtgaaacggagggagtactaggtaatgcacatgtaggtcagttttccttgttttgagcacttcactttgaaaagacatgttgcatcataatattatttattgtccaaatagattggttggatgacagcatggcaccatccagaatcctgatcttgccaagtactcttcctgaaccaaacactgatcttgtaacattctatctgacatttgttgcaagaattgatggtcttggaatataccgtcattcttgaatattaatacaaaacatacctgttatgtattcttaattagtttttctgattgctattttgctgggagtctctttgaagtaacagcttctgaataatttaacaaacttttatctttccatttttctagatgataaacttacattttctttatttgaaatgaaaccagtcttccggataaagtctatacgcttgctgcggaggtggtaaaaaaattggctagtgtggcggtatcccaccggaaattcttctctatggagctagccagtgctgctcagagcttaagttcttcagcagtagaggagcttgtaacattgaagaacacacaaatgcttgggctcaattcttgttctatggctggggctgccatcctgcgggtcttacaggtcctatctacattgacctcagatatgagtggtaatagccaggatcaggctgtgggacaggaagaacagtctattttgtgggatttgaatatatcacttgagcctttgtggcaagaactaagtgactgtataagcactacagaggcaaaacttgttcataattcaagtttcaatccccaggttcctttgatggatgcaatagaagttggtgcctcatcctctacttccccacctcttcctccaggcacacaacgccttttgccatttatagaatccttttttgttctgtgtgagaagcttcaaacaagccaagcagttgtgccatctgattccaatgtgactgctacagaagtgaaagaacttgctgggagttcatcgtccccatcactaaagactggtggagtatgcaatattacttttgtaagggtggcagaaaaacatcggcgcctcctcaatgtgttcattcgacagaatccaagtttgctagaaaagtcactttctatgatgttgaaagtaccaaggctgatagactttgacaacaagcgtgcttactttagatcacgcattaggcagcaacatgatcagcatctttctgctcctttgcggattagcgttcgtcgggcatatgttttggaggattcatacaatcagttgaggttacgtcgtagccaggatcttaagggccgcttgactgtgcaattccaaggagaggaggggattgatgctggtggactaactagggagtggtatcaacttctatctagagttatttttgacaaaggagctctgctcttcaccactgttgggaacaatgcaactttccagcctaaccccaactcagtttatcaaacagagcacctttcctatttcaagtttgttggtcgagtggtaagatttcttgaatgtccttgttgaactatatacatttatctttgtttttgagaccctgttatctgggattttgggcaggttgccaaagccttatttgatggccaattattggatgttcactttacccgttcattttacaaacacatacttggtgttaaagtgacttatcatgatatagaggctgttgatcctgattactacaaaaatttgaagtggatgctagaggtatggtttcaccatccattattttgtgggaataagtcaggtgcatttgtgtgctgttccagaactgaatatatatgtatatatatatttttttaacagaatgatgtaagtgatattcctgacctgacattcagcatggaccctgatgaagaaaaacatattctttatgagaaaaatgaggtagagagatgagtttctattgtttacccaaagcttgtttactgttgacatgtcttatggtctgttacttaatgaatctgtaattcaggttactgattatgagctcaaacctggtgggagaaacatcagggtcactgaagaaacaaaacatgagtatgtcgatcttgtggctgaacatatattgaccacagcaattcgccctcaaattaatgctttccttgaaggattcacagaattagttccaagggagctcatttccctatttcatgataaagaacttgaactcttgatcagtggacttcctgaaatcgactgtaagagcttcatctcagttaaaaatccttacatttatttcttacattcgtcttattattattgttattattatttgtcagttgatgacctgaaagcaaatgcggagtatattgggtattcgcctgcatctccggtcatcctgtggttctgggaagtagttaatggtttcagcaaggaggacatggcaagatttctacaatttgtgacaggaacatcaaaagtaaaaaaaaaaacttcatttgacagttgattttgttatatctatttcattttaaagcatacatcaaggttcatattatttgtttaacatattgtagagattcatttttttggctgaagttagaaacactgcatgtgaatatccagtgaagtgttgcattcgatgttttttattcacttgtatattttacatatagttgatgaattggttgtttgtttttctgttaaaattagttgtttaaattatttggaaaaggtcaccctgaaattttgcattcattttcctcctgaactaagaaacattgcaatttacagctttaaactctgaaacccctttttacgaaacaaaccctgagccctgaatgaattttgttttacattgatgtggcagtggttttgatagtcattgctgatgtgatatcataattagaatcctctgttcgtcccactgtctcttcctagtttagtgtcctctatcaaaatatttttgttaggtgtaaaaactaccgggaaacctcatatactgttaattgttgtgttgtccagtgtacattgattgtagggtaaactagttggcctacttgaaagtttggagtatataactattccgtttactagcagtttcccttgctgtattaataagatgggtttctcttcatgtcaagtaagatgcaagttgactatagagctagatattctggtaaaacatacgaatccttatgtgatttgctatgttaagaacttaagattggtttctcttcatgtgatggtgttgcaggtaccattagaaggtttcaaagcgctacaaggtatttctggtcctcagagattccagattcacaaggcttatggagctccagagaggcttccatctgcccatacttggtaatatttatatttttcaatcactgactagaacactcattatgtaactgtttatgctgtttcaatgatgctcatttcatacataatgtgcagctttaatcaactggatttaccagagtattcctcaaaggagc</dnaseqindica> 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| External Link(s) |
