Difference between revisions of "Os04g0622600"
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===Structure=== | ===Structure=== | ||
| + | *The composite nucleotide sequence of the Xa1 cDNA encoded a 5,406-bp ORF that was flanked by 59 and 39 untranslated regions of 112 and 392 bp, respectively. The nucleotide sequence of the 13.5-kb EcoRI-BamHI genomic fragment was also determined and compared with that of the cDNA sequence. The Xa1 gene was composed of four exons separated by three introns. | ||
| + | *The C-terminal half of Xa1 gene is composed of LRR, the common motif of the several classes of resistance genes. | ||
| + | *XA1 protein contains 22 potential N-linked glycosylation sites. Six of these sites are at amino acid position 36 of each LRR repeat. These structural characteristics suggest that the Xa1 product interacts with other proteins in a defense reaction–signal transduction pathway<ref name="ref2">. | ||
==Labs working on this gene== | ==Labs working on this gene== | ||
Revision as of 08:37, 8 October 2013
Xa-1 is one of bacterial blight resistance genes in rice. Although at least 38 resistance genes have been identified, Xa-1 is specific to X. oryzae pv. Oryzae. Xa-1 can be considered as a dominant resistance gene.
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Annotated Information
Function
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Expression
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Evolution
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Structure
- The composite nucleotide sequence of the Xa1 cDNA encoded a 5,406-bp ORF that was flanked by 59 and 39 untranslated regions of 112 and 392 bp, respectively. The nucleotide sequence of the 13.5-kb EcoRI-BamHI genomic fragment was also determined and compared with that of the cDNA sequence. The Xa1 gene was composed of four exons separated by three introns.
- The C-terminal half of Xa1 gene is composed of LRR, the common motif of the several classes of resistance genes.
- XA1 protein contains 22 potential N-linked glycosylation sites. Six of these sites are at amino acid position 36 of each LRR repeat. These structural characteristics suggest that the Xa1 product interacts with other proteins in a defense reaction–signal transduction pathwayCite error: Closing
</ref>missing for<ref>tag - [1]
- [2]
</references>
Structured Information
| Gene Name |
Os04g0622600 |
|---|---|
| Description |
Similar to XA1 |
| Version |
NM_001060453.1 GI:115460635 GeneID:4337041 |
| Length |
24820 bp |
| Definition |
Oryza sativa Japonica Group Os04g0622600, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 4:32036440..32061259 |
| Sequence Coding Region |
32036638..32036944,32037050..32037359,32038010..32040669,32041690..32042325,32059375..32060870 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008397:32036440..32061259 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008397:32036440..32061259 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggaggaggtggaagccggttggctggagggcgggatcaggtggctggcggagaccatcctggataacctggacgccgacaagctggatgaatggattcgccagattaggctcgccgctgacaccgagaagctacgggctgagatcgagaaggtggatggggtggtggctgccgtgaaggggagggcgatcgggaacaggtcgctggcccgatcgctcggccgtctcagggggttgctgtacgacgccgacgatgcggtcgacgagctcgactacttcaggctccagcagcaggtcgagggaggagttactacacggtttgaggctgaagagacggtcggagatggagcagaggacgaggacgatattccgatggacaatactgatgtaccggaggcagtggcggcaggcagcagcaagaaacggtccaaggcatgggaacactttactaccgtagagttcactgctgacgggaaggattctaaagcacggtgcaagtactgccacaaggacctatgttgcacatctaagaacgggacatcagctttgcgcaaccatctcaatgtttgcaagaggaaacgtgtaacaagtactgaccaaccggtaaatccatcaagtgccggtgagggtgcatcaaatgcaactggtaattcagttggcagaaaaaggatgagaatggatgggacttcaacacaccacgaggcagttagcacgcacccttggaacaaggctgaactttccaacaggatccaatgcatgactcatcagttagaagaggctgtaaatgaggttatgaggctatgtcgatcctcaagttcaaaccagagtcgacagggtacaccaccggccacaaatgcaacaacatcgtcttatcttccggagcccatagtgtatgggagggctgcagagatggaaaccatcaaacagctgatcatgagcaatagatctaatggcataaccgtcctgccaattgtaggcaatggagggataggaaaaaccactttggcgcaactggtctgcaaagatctggtaattaaaagtcagtttaatgttaagatatgggtgtatgtatctgataaatttgatgtagttaagattacaaggcagattttggatcatgtctccaaccagagccacgaaggaataagcaaccttgatacgcttcagcaggatcttgaggaacaaatgaaatctaagaagttcctcattgtcttagatgatgtgtgggaaatccgtacagatgactggaaaaaactactggctcctttaagacctaatgatcaggtgaattcgtcacaggaagaggcaacaggtaatatgataattttgacaactcgtatacagagtattgccaaaagtcttggaacagtacaatcaattaagttagaagctctgaaagatgacgatatatggtcactatttaaagtgcatgcttttggtaatgataaacatgatagtagtccaggcttacaggttcttgggaagcaaattgctagcgagctaaaaggcaacccactggcagcaaaaactgtgggttcactattaggaacgaatcttaccatcgatcattgggatagcattataaagagtgaagaatggaaatccctgcaacaagcttatggcatcatgcaagcgctgaagttgtgctatgatcatctatccaaccccttacagcaatgcgtctcttattgttctcttttccccaagggttattctttcagcaaagcacaactaatacaaatatggattgctcaaggatttgtggaagaatccagtgagaagttggagcagaaaggatggaaatatctagctgagttggtaaattcgggtttccttcagcaagttgaaagcacacggttttcatcagaatattttgttgtgcacgatcttatgcatgatttagcgcaaaaggtttcacaaacagaatatgcaactatagatggctcagagtgcacagagttagccccaagtatacgccatttgtcaatagtaactgattctgcataccgcaaggagaaatatagaaacatatctcgtaatgaggtgtttgagaaaaggttgatgaaagttaagtcaaggagtaagttgaggtcactggtattaattgggcaatatgattctcatttttttaaatatttcaaagatgctttcaaggaagcacaacatctgcgactgctgcagatcactgcaacttatgctgattctgattcatttctctccagtttggtaaattctacacatctccggtatctgaaaattgtgactgaagaatccggcagaactttgccccgatctctaaggaagtattaccatcttcaagtactagatattggctatagatttggaattccccgtatatctaatgatataaataatcttctcagcctgcggcatcttgttgcatatgatgaagtgtgttcttccattgctaacattggtaaaatgacctcacttcaggaactaggcaattttattgttcagaataatttaagtggttttgaggtgacacaattgaaatccatgaacaagcttgtacaacttagtgtgtctcaacttgaaaatgttagaactcaggaggaggcatgtggggcaaaactgaaagacaaacaacacttagaaaagctacatttgtcctggaaggatgcatggaatggatatgacagtgacgaaagctatgaagatgaatacggcagtgatatgaatatagaaacagaaggggaggaactgtcagttggtgatgccaatggtgcccaaagcttacaacatcacagtaatataagctctgaacttgcttcaagtgaggtgctcgaaggtcttgaaccacatcacggcctcaagtatctacggatatctgggtataatggatctacctccccaacttggcttccttcttcacttacctgtctgcaaacacttcatctagaaaaatgtggaaaatggcaaatacttcctttagaaaggctagggttacttgtaaagctcgtgttgatcaaaatgaggaatgcaacagaactctcaatcccttcactggaggagcttgtgttaattgcattgccaagcttgaacacatgctcctgcacttccatcaggaacttgaactccagtttaaaggttctgaaaattaagaattgccctgtactgaaggtatttcccttgtttgagatttgccagaaatttgaaatcgagcggacgtcgtcatggttgccccatcttagcaagcttaccatctataattgtcctctttcctgtgtgcacagttctctgccaccttcatctatcagcggccatgaagaagatggaatgtgtatccttccgcaatcacttgaggaaatttacatctgcgagtactctcaagagaggctgcagctctgctttccaggaagcctcacccgcctgaaaaaactagtagtgttgggaaaccaaagtttaacatctctgcagctccattcctgcacagcactccaagagttgataattcaaagctgtgagtcgcttaattctctggaaggcttgcaatggctcggcaacctcaggttgctgcaggcacacagatgcctcagtggttatggagaaaatggaaggtgtatccttccacaatcacttgaggaactttacatcagagagtattctcaagaaacgctgcagccctgctttccagggaacctcaccagcttgaaaaaactagaagtacagggaagccaaaagttaatatctctgcagctgtattcctgcacagcactccaagagttgatgattgaaagttgtgtgtcgcttaattctctggaaggcctgcaatggctcgtcaacctcaggttgctgcgggcacacagatgcctcagtggttatggagaaaatggaaggtgtatccttccacaatcacttgagggactttacatcagagagtattctcaagaaacgctgcagctctgctttccaggaaacctcacccgcctgaaaacactagtagtgttgggaaaccaaagtttaacatctctgcagctccattcctgcacagcactccaagagttgataattcaaagatgtgaatcacttaattctctggaaggtttgcaattgctcggcaatctcagggggctgctggcacacagatgcctcagcggccatggagaagatggaaggtgtatccttccgcaatcacttgagaaactttacatctgggagtactctcaagagaggctgcagctctgctttccaggaaacctcacccgccagaaaatactaggagtgttgggaagccaaagtttaacatctctgcagctccattcctgcacagcactccaagagttgatgattcgaagctgtgaatcgcttaattctctggaaggcttgcaatggctcggcaacctcagggtgctgcgggcacacagatgcctcagtggttatggagaatatggaaggtgtacccttccgcaatcacttgaggaactttacatccatgagtattctcaagaaactctgcagccctgcttttcagggaacctcactctcctgagaaaattacaagtaaaggggaactcaaatttagtgtctctgcagctccattcttgcacatcactccaagagttgataattgaaagctgtaagtcaattaattcgctggaaggcttgcaatcgcttggcaacctcaggttgttgcgggcattcagatgcctcagtggttatggagaatatggaaggtgtatccttccgcaatcacttgaggaacttttcatcagtgagtattctctagaaactctgcagccctgcttcctgacgaatctcacctgcttaaaacaattagaggtatcaggcaccacaagtttaaaatctctagaactgcaatcatgcactgcactcgaacatttgaagattcaaggttgtgcgtcgcttgctacattggaggggttgcaattcctccacgccctcaggcatatggaagtattcagatgccctggcttgcctccatatttggggagttcgtcagagcagggctatgagctatgcccacgactggaaaggctcgacatcgatgacccctctatccttaccacgtcgttctgcaagcacctcacctccctccaacgcctagagcttaactatcgcggaagtgaagtggcaagactaacggatgagcaagagagagcgcttcagctcctattgtccctgcaagagctccggtttaagtcttgctacgatctcgtagatcttcctgcggggctccacagccttccctccctcaagaggttggagatctggtggtgcaggagcatcgcgaggctgccagagatgggcctcccaccttcgttggaagaactggttatcgtagattgcagtgacgagctagctcatcagtgcagaactctagcaagcaagctgaatgtcaaaattaatggggaatatgtgaactga</cdnaseq> |
| Protein Sequence |
<aaseq>MEEVEAGWLEGGIRWLAETILDNLDADKLDEWIRQIRLAADTEK LRAEIEKVDGVVAAVKGRAIGNRSLARSLGRLRGLLYDADDAVDELDYFRLQQQVEGG VTTRFEAEETVGDGAEDEDDIPMDNTDVPEAVAAGSSKKRSKAWEHFTTVEFTADGKD SKARCKYCHKDLCCTSKNGTSALRNHLNVCKRKRVTSTDQPVNPSSAGEGASNATGNS VGRKRMRMDGTSTHHEAVSTHPWNKAELSNRIQCMTHQLEEAVNEVMRLCRSSSSNQS RQGTPPATNATTSSYLPEPIVYGRAAEMETIKQLIMSNRSNGITVLPIVGNGGIGKTT LAQLVCKDLVIKSQFNVKIWVYVSDKFDVVKITRQILDHVSNQSHEGISNLDTLQQDL EEQMKSKKFLIVLDDVWEIRTDDWKKLLAPLRPNDQVNSSQEEATGNMIILTTRIQSI AKSLGTVQSIKLEALKDDDIWSLFKVHAFGNDKHDSSPGLQVLGKQIASELKGNPLAA KTVGSLLGTNLTIDHWDSIIKSEEWKSLQQAYGIMQALKLCYDHLSNPLQQCVSYCSL FPKGYSFSKAQLIQIWIAQGFVEESSEKLEQKGWKYLAELVNSGFLQQVESTRFSSEY FVVHDLMHDLAQKVSQTEYATIDGSECTELAPSIRHLSIVTDSAYRKEKYRNISRNEV FEKRLMKVKSRSKLRSLVLIGQYDSHFFKYFKDAFKEAQHLRLLQITATYADSDSFLS SLVNSTHLRYLKIVTEESGRTLPRSLRKYYHLQVLDIGYRFGIPRISNDINNLLSLRH LVAYDEVCSSIANIGKMTSLQELGNFIVQNNLSGFEVTQLKSMNKLVQLSVSQLENVR TQEEACGAKLKDKQHLEKLHLSWKDAWNGYDSDESYEDEYGSDMNIETEGEELSVGDA NGAQSLQHHSNISSELASSEVLEGLEPHHGLKYLRISGYNGSTSPTWLPSSLTCLQTL HLEKCGKWQILPLERLGLLVKLVLIKMRNATELSIPSLEELVLIALPSLNTCSCTSIR NLNSSLKVLKIKNCPVLKVFPLFEICQKFEIERTSSWLPHLSKLTIYNCPLSCVHSSL PPSSISGHEEDGMCILPQSLEEIYICEYSQERLQLCFPGSLTRLKKLVVLGNQSLTSL QLHSCTALQELIIQSCESLNSLEGLQWLGNLRLLQAHRCLSGYGENGRCILPQSLEEL YIREYSQETLQPCFPGNLTSLKKLEVQGSQKLISLQLYSCTALQELMIESCVSLNSLE GLQWLVNLRLLRAHRCLSGYGENGRCILPQSLEGLYIREYSQETLQLCFPGNLTRLKT LVVLGNQSLTSLQLHSCTALQELIIQRCESLNSLEGLQLLGNLRGLLAHRCLSGHGED GRCILPQSLEKLYIWEYSQERLQLCFPGNLTRQKILGVLGSQSLTSLQLHSCTALQEL MIRSCESLNSLEGLQWLGNLRVLRAHRCLSGYGEYGRCTLPQSLEELYIHEYSQETLQ PCFSGNLTLLRKLQVKGNSNLVSLQLHSCTSLQELIIESCKSINSLEGLQSLGNLRLL RAFRCLSGYGEYGRCILPQSLEELFISEYSLETLQPCFLTNLTCLKQLEVSGTTSLKS LELQSCTALEHLKIQGCASLATLEGLQFLHALRHMEVFRCPGLPPYLGSSSEQGYELC PRLERLDIDDPSILTTSFCKHLTSLQRLELNYRGSEVARLTDEQERALQLLLSLQELR FKSCYDLVDLPAGLHSLPSLKRLEIWWCRSIARLPEMGLPPSLEELVIVDCSDELAHQ CRTLASKLNVKINGEYVN</aaseq> |
| Gene Sequence |
<dnaseqindica>199..505#611..920#1571..4230#5251..5886#22936..24431#catcagacgattaatccacgacgaccaggagcgctgccccgagccacacgcccacacgcactggtgaatcttctcctttccacctagttttcactctgcagtctcctctcctagctactactctgccttcccatcctcgcttgttgcagccctcttgcacacgccattggccacagtccaaggactgctcctgttccgatggaggaggtggaagccggttggctggagggcgggatcaggtggctggcggagaccatcctggataacctggacgccgacaagctggatgaatggattcgccagattaggctcgccgctgacaccgagaagctacgggctgagatcgagaaggtggatggggtggtggctgccgtgaaggggagggcgatcgggaacaggtcgctggcccgatcgctcggccgtctcagggggttgctgtacgacgccgacgatgcggtcgacgagctcgactacttcaggctccagcagcaggtcgagggaggaggtactgtctttgcatatatccgtgccttttaattaagtttgcaagctgcgttgcctgcaacaatggcgtattggcgtcagtttccaatccatgcttgtgctacagttactacacggtttgaggctgaagagacggtcggagatggagcagaggacgaggacgatattccgatggacaatactgatgtaccggaggcagtggcggcaggcagcagcaagaaacggtccaaggcatgggaacactttactaccgtagagttcactgctgacgggaaggattctaaagcacggtgcaagtactgccacaaggacctatgttgcacatctaagaacgggacatcagctttgcgcaaccatctcaatgtttgcaagaggaaacgtgtaacaagtactgaccaaccggtaaatccatcaaggtaatgctaatggagttctgaatttagtgtaaatccgttgaagtgtaaatttggcccgttacatctgcttaagatctcattctgtctctaatcttctaatagccaactcatggtcattttttttcctaatatatagtaccggtgatggtgcaccaaatgtaattagatgcaaggaaacaaaagtgaacaattgtatatatcaaatataattatatctaaaacatgagtagtgtatcaaatccaattctttcaaaaatctactatgcaaaattgagtgacaaaatctgctgcctttttttttttacagaaagcaaccaattaatataagtcaaatataaaaacgctttgtagtctccaataaaatagctcattgtttcgtttatacttatgtttataaatttaaatttaaaacttaattttggagttgattttgtggttttcttttcatcctattttattttacaacatttgattttgaatagttaagaatgcgtatataaaaattttacccataagttattttttaaattgttaataaatcgtaaggataatcataagtataagtgaaatgattcgctcttcatctacttaagattgcgttatattgctgacctttctaatcgcctaaccacgatcacatgctcttccagtgccggtgagggtgcatcaaatgcaactggtaattcagttggcagaaaaaggatgagaatggatgggacttcaacacaccacgaggcagttagcacgcacccttggaacaaggctgaactttccaacaggatccaatgcatgactcatcagttagaagaggctgtaaatgaggttatgaggctatgtcgatcctcaagttcaaaccagagtcgacagggtacaccaccggccacaaatgcaacaacatcgtcttatcttccggagcccatagtgtatgggagggctgcagagatggaaaccatcaaacagctgatcatgagcaatagatctaatggcataaccgtcctgccaattgtaggcaatggagggataggaaaaaccactttggcgcaactggtctgcaaagatctggtaattaaaagtcagtttaatgttaagatatgggtgtatgtatctgataaatttgatgtagttaagattacaaggcagattttggatcatgtctccaaccagagccacgaaggaataagcaaccttgatacgcttcagcaggatcttgaggaacaaatgaaatctaagaagttcctcattgtcttagatgatgtgtgggaaatccgtacagatgactggaaaaaactactggctcctttaagacctaatgatcaggtgaattcgtcacaggaagaggcaacaggtaatatgataattttgacaactcgtatacagagtattgccaaaagtcttggaacagtacaatcaattaagttagaagctctgaaagatgacgatatatggtcactatttaaagtgcatgcttttggtaatgataaacatgatagtagtccaggcttacaggttcttgggaagcaaattgctagcgagctaaaaggcaacccactggcagcaaaaactgtgggttcactattaggaacgaatcttaccatcgatcattgggatagcattataaagagtgaagaatggaaatccctgcaacaagcttatggcatcatgcaagcgctgaagttgtgctatgatcatctatccaaccccttacagcaatgcgtctcttattgttctcttttccccaagggttattctttcagcaaagcacaactaatacaaatatggattgctcaaggatttgtggaagaatccagtgagaagttggagcagaaaggatggaaatatctagctgagttggtaaattcgggtttccttcagcaagttgaaagcacacggttttcatcagaatattttgttgtgcacgatcttatgcatgatttagcgcaaaaggtttcacaaacagaatatgcaactatagatggctcagagtgcacagagttagccccaagtatacgccatttgtcaatagtaactgattctgcataccgcaaggagaaatatagaaacatatctcgtaatgaggtgtttgagaaaaggttgatgaaagttaagtcaaggagtaagttgaggtcactggtattaattgggcaatatgattctcatttttttaaatatttcaaagatgctttcaaggaagcacaacatctgcgactgctgcagatcactgcaacttatgctgattctgattcatttctctccagtttggtaaattctacacatctccggtatctgaaaattgtgactgaagaatccggcagaactttgccccgatctctaaggaagtattaccatcttcaagtactagatattggctatagatttggaattccccgtatatctaatgatataaataatcttctcagcctgcggcatcttgttgcatatgatgaagtgtgttcttccattgctaacattggtaaaatgacctcacttcaggaactaggcaattttattgttcagaataatttaagtggttttgaggtgacacaattgaaatccatgaacaagcttgtacaacttagtgtgtctcaacttgaaaatgttagaactcaggaggaggcatgtggggcaaaactgaaagacaaacaacacttagaaaagctacatttgtcctggaaggatgcatggaatggatatgacagtgacgaaagctatgaagatgaatacggcagtgatatgaatatagaaacagaaggggaggaactgtcagttggtgatgccaatggtgcccaaagcttacaacatcacagtaatataagctctgaacttgcttcaagtgaggtgctcgaaggtcttgaaccacatcacggcctcaagtatctacggatatctgggtataatggatctacctccccaacttggcttccttcttcacttacctgtctgcaaacacttcatctagaaaaatgtggaaaatggcaaatacttcctttagaaaggctagggttacttgtaaagctcgtgttgatcaaaatgaggaatgcaacagaactctcaatcccttcactggaggagcttgtgttaattgcattgccaagcttgaacacatgctcctgcacttccatcaggaacttgaactccagtttaaaggttctgaaaattaagaattgccctgtactgaaggtatttcccttgtttgagatttgccagaaatttgaaatcgagcggacgtcgtcatggttgccccatcttagcaagcttaccatctataattgtcctctttcctgtgtgcacagttctctgccaccttcatctattgtttccaaattatcgatcggtaaagtttcaacacttccaacggtgagggggtcatctagtggaacattaataattggactgcaccccgatgaagttgatgatgatgatggtttggaggattctgatcagctgaaaacgttggatgacaaagtactattattccataacctgaggttcctaactagcttggcaatatatggttgtcgaaatcttgcgactatttcaattgaaagtttaaggcaactcgtttgtttgaagagtttggaattatacggctgcccaaaacttttctcttcagatgttccaccagagcttacatgtgaatatatgtcaggagcaaatcacagcgccctcccatctctcgaatgtctctatattgaggattgtggaataacggggaagtggctgtctctgatgttgcaacatgtgcaggccctacaggaactgagtttagaggactgccagcagataacaaggctatcgataggagaggaagaaaacagtcaaccaaatcttatgtcagctatggaggatccgtcattaggatatccagatcgagacgaacttctgcgccttccgttaaatctcatctcttctctgaaaaaggtatctattacatattgctatgatttaacattctacggcagcaaggtagatttcgctggatttacctcccttgaggagttagtgatttcacgatg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| External Link(s) |
- ↑ oshimura S, Yamanouchi U, Katayose Y, et al. Expression of Xa1, a bacterial blight-resistance gene in rice, is induced by bacterial inoculation[J]. Proceedings of the National Academy of Sciences, 1998, 95(4): 1663-1668.
- ↑ Sasaki T. The rice genome project in Japan[J]. Proceedings of the National Academy of Sciences, 1998, 95(5): 2027-2028.
