Difference between revisions of "Os03g0181500"
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==Structured Information== | ==Structured Information== | ||
Revision as of 15:49, 7 May 2014
Please input one-sentence summary here.
Contents
Annotated Information
Function
ONI1 gene is originally derived from Oryza sativa Japonica Group(cultivar: Nipponbare). It encodes an fatty acid elongase involved in the synthesis of very-long-chain fatty acids, which are the component of extracellular waxes[1].
It's the key gene for correct acid composition and normal shoot development in rice. Mutation of ONI1 will induce a reduced amount of very-long-chain fatty acids[2] and failure of the maintenance of SAM and ectopic expression of SAM-specific KNOX genes in leaf[3].
Expression
This gene expresse in the outermost cells of the embryo, SAM, young leaves and floral organs.
At 3 days after pollination, ONI1 expression can be detected in the outermost cells of a globular embryo.
At 4-5 days after pollination, ONI1 expression can be detected in L1 of newly developed shoot organ as well as outermost cells of the embryo.
At 7-10 days after pollination, ONI1 expression can also be detected in L1, but the quantity is reduced.
During vegetative growth phase (within one month after germination), ONI1 expression can be detected in L1 of SAM and young leaves.
During reproductive growth phase, ONI1 expression can be detected in L1 of the developing panicle and floral organs.
In conclusion, ONI1 is an L1-specific gene of the SAM and young above-ground organs[1].
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this gene
Plant Genetics Laboratory, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka-ken, 411-8540 Japan
Graduate School of Agricultural Science, Tohoku University, 1-1 Tsutsumidori-Amamiyamachi, Aoba-ku, Sendai, 981-8555 Japan
State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, 100101 Beijing, People’s Republic of China
Institute of Cellular and Molecular Botany, Department of Ecophysiology, University of Bonn, 53115 Bonn, Germany
References
Structured Information
| Gene Name |
Os03g0181500 |
|---|---|
| Description |
Similar to Fiddlehead protein |
| Version |
NM_001055705.1 GI:115451138 GeneID:4331836 |
| Length |
4801 bp |
| Definition |
Oryza sativa Japonica Group Os03g0181500, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 3:4245314..4250114 |
| Sequence Coding Region |
4245368..4245778,4248671..4249888 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008396:4245314..4250114 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008396:4245314..4250114 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaa</cdnaseq> |
| Protein Sequence |
<aaseq>MAREQALLLTEIVNRGVEPSGPDAGSPTFSVRVRRRLPDFLQSV NLKYVRLGYHYLISHGVYLATIPVIVLVCGAEVGSLSRDELWRKVWGEATYDLATVLA FLAVLAFTISVYIMSRPRPVYLIDFACYKPADELKVSKAEFIDLARKSGKFDEDSLAF QSRLLAKSGIGDESYMPRCVFEPGTNCATMKEGRAEASAAMFAALDELFDKCRVRPKD VGVLVVNCSLFNPTPSLSAMIVNHYKMRGNILSYNLGGMGCSAGVIAVDLARDMLQAS GAGLAVVVSTEAVSFTWYAGKRRSMLIPNAFFRAGCAAVLLSNRRRDFHRAKYQLEHI VRTHKGADDRSFRSVYQEEDEQRIKGLSISRDLVEVGGHALKTNITTLGPLVLPFSEQ ILFFAGVLFRHLFPSKTSAPPPPSADGDASAAAPYIPDFKRAFEHFCMHAASRDVLEH LQGNLGLRDGDLEASRAALHRFGNTSSSSIWYELAYLEAKGRVRRGDRVWQLAFGSGF KCNSAVWRAVRRVRRPARSPWLDCVEQYPARMNA</aaseq> |
| Gene Sequence |
<dnaseqindica>55..465#3358..4575#acttcactgccttctcatttactgcagaaggtgaaggtgaaggaggaggcggccatggcgagggagcaggcgctgctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgccgacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaagtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatcccggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccgagacgagctgtggcgcaaggtctggggcgaggccacctacgacctcgccaccgtcctcgccttcctcgccgtcctcgccttcaccatctccgtctacatcatgtccaggcctaggcccgtctacctcatcgacttcgcctgctacaaaccagccgacgaactcaaggtaatactacttaattccatgcttaatcacgtatacacatattcggtagttcatcggagtagattagtattatattactagtattatgtttaaatgaaagcatattatgccaatgtgtgaagctcctaggatctatgatttgttactgcgcaagaaacttgttcgttctaacatttcagatctcacgtaaattgaatcggccaaggttttattctgaaacaataaaagcatatttctggtgcaaaaggatagatcggataaaacatatatattgacgttatacaaagtgctcaaggactaaatgaaggtctcatatggagctagcataggatcgaatttcatgattcatggaatccacatggtccttcagtgatctagccaactgtttttcaaacagcgccattctttttttttttttgagacgaatcaaacaacgcaaattaaaactgcaaatatacttttggatttaccggacgtagtagctgaaatctcaaaactgtgaaagctattcaaggtgaggtgtgaagagaaaactcttggaacgtgtaagccttgggcctcctttaatggttgagctagctcatgcttgtccacctcatataagagatagtaaaaagtctacctctcccatagattgtctcatagcacattgtataaaatgctttaggtttcacaatttctttagtagcttagctcttaaagaagagatagtgcattctctttccttatcttctctctcttccacatcatacaaaagctgatgtggagatttatgagctagctgacttacctttgttggaggagggtttagtattaactgctggatgaacttgcattgacaacaacaaaaaaaaaaaaactcatcatcagttgggcttttagttgtgaataactattggtatagtggtgtctatagctagtactactccgcatggtcctttaatacggtcataatccttgccagctactaccagctcaaatgcttttaatgtagcacacattcactatttgagcactgacaaatctgcccggcactgactgaaatacccgagccacgctcatacgattaccacctccattttacttgacagccctagatagaaccggtgtgattcgtcttttttttttccttgagatttcaccacattggcatatttgaaatcatcttgaattaaatttttagaaattatatcattagatccatcataaaaaaaatacttccatacttagtatacgcttgttattactccctccatttcaggttataaaatattttgactttggtcaaagtcaaactttcaagtttgaccaagtttatataaaaaaatagtaatattttcgaccgaagataaatttattataaaaatatatttaattattaatttaataaaactaatttgctaatttaaatattaccatatttttcatatttgtctataaacttagttaaatttgaagcagtttgactttgaccaaagtcaaaacatcttataacatgaaacggagggattatatcctaacacaacgttgtaaaatgtgcaatggtcaaagcaatatcttagaaattgcacaaaaaaaaaagaacggaggtagtgctattttgtatgaatcaaattcatttatcatatattgattctacacctaataagtttacactagatagatgcttttccttgtgcccgagtgcctctgttatcttgtactgtatgttacttttagtataaatactgccatcattctcaagtaaagtctttgaccactgcttttttccctgattactctatgttgactaaaggaatggtaataaaatattaactgaatattataaagtatttacatgatatattagatccaaaattgataagaagctcctccttagtagatactccaaaagaaactctagttatatctttgcagacttaggcctggtttagttctccaattttttttccctaaaacataacatcgaatctttgaacacatgcatggagcattaaatataaattacaaaaactaattgcacagttaggggggaaatcacgagacgaatcttttgagcctaattagtccataattagccatatgtgctacagtaatccacatgtgctaatgacagattaattaggctcaaaagatttgtctcgcggtttccaaacgagttatgaaattattttttcattcgtatccgaaaaccccttcgacatccggtgaaatatctgatatgacatataaaaaatttcttttcacgaaaccgcgttatgaaattagttttttcattcgtatctgaaaacctctttcgacatccggtaaaatatctgatgtgacatataaaaattttcttttcacgaactaaacaggcccttatatgctacacatcactaagttttggaaaacagtttgttggctaccattattttgttggagtcttgaatgcaagttaggaggcacctttggttgggccccagtccttggaagtgaatgggcagggcagggtcgaagttatgacgagctggtaggatgctttcggttatggccaggccagccggtgactcgatcagtcgatcgctctcacttgctcgtgtcatcaaatacggttgggcgattgggcacacacattcaatgagccgaaccgtattattaaaccgtaaatgttttgcgtgagcacacattttcttttcgaaaaatgttttgcgtgagcacacaaaccacaacctgcactatccttgcacgcacgatggatttgagtcaaacaaccaagtttacccggttcgcatgcatgaaatttcttcgatttcacttgttacttacagtttgtaatcagtttgatgcattatggtactagctggtgatttgtaagcaaggatgtgattttgcatggacaattgcttgcaggtgtcgaaggcggagttcatcgatctggcgaggaagtcgggcaagttcgacgaggatagcctggcgttccagtcgcggctgctggccaagtctggcatcggcgacgagtcctacatgccgcgctgcgtgttcgagccgggcaccaactgcgccaccatgaaggaaggccgcgccgaggcgtccgccgccatgttcgccgcgctggacgagctgttcgacaagtgccgcgtccgccccaaggacgtcggcgtgctcgtcgtcaactgcagcctcttcaacccgacgccgtcgctgtccgccatgatcgtcaaccactacaagatgcgcgggaacatcctcagctacaacctcggcggcatggggtgcagcgccggcgtcatcgcggtggacctcgcccgcgacatgctccaggccagcggcgcggggctcgccgtcgtcgtcagcacggaggccgtctccttcacctggtacgccgggaagcgccgctccatgctcatccccaacgccttcttccgcgccggctgcgccgccgtgctgctctccaaccgccgcagggacttccaccgcgccaagtaccagctcgagcacatcgtgcgcacccacaagggcgccgacgaccgcagcttccggtcggtgtaccaggaggaggacgagcagcggatcaagggcctgtccatcagccgcgacctcgtggaggtcggcggccacgcgctcaagaccaacatcaccaccctgggcccgctcgtgcttccgttctcggagcagatcctcttcttcgccggcgtgctcttccgccacctgttcccgtccaagacctccgccccgccgccgccgtccgccgacggcgacgcctccgccgccgctccctacatcccggacttcaagcgcgcgttcgagcacttctgcatgcacgcggcgagccgcgacgtgctggagcacctgcagggcaacctgggcctccgcgacggcgacctggaggcgtcgcgcgccgcgctccaccgcttcggcaacacgtcgagcagcagcatctggtacgagctggcgtacctggaggccaagggccgcgtccgccgcggcgaccgcgtgtggcagctcgccttcggctccgggttcaagtgcaacagcgccgtgtggcgcgccgtccgccgcgtgcgccgcccggcgcgcagcccgtggctggactgcgtcgagcagtacccggctcgcatgaacgcttaagctgcagtggtaagtatgcagaggctaatgaacggaaaattactgcaacgtcaaaagacgggatcggcatgcgatgccggttaaggttcaagcttgattaatttgtgttggtgtattagcaagtcggtttatgagccatagactaccataaaagttgtgcgagacatgtgtactgaaccagtgtacgcgagttcggtgatatgtgaacttatctacgtttgattct</dnaseqindica> |
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