Difference between revisions of "Os01g0147900"
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==Annotated Information== | ==Annotated Information== | ||
===Function=== | ===Function=== | ||
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| + | Among the proteins hyper-accumulated in gid1 were osmotin, triosephosphate isomerase, probenazole inducible protein (PBZ1) and pathogenesis-related protein 10<ref name="pmid:17080612"/>. | ||
| + | |||
| + | Triosephosphate isomerase, fructokinase II, DNA-binding protein GBP16 and ribosomal protein L3B were over-expressed in YTB, while oligopeptide transporter, floral organ regulator 1, kinase and S-adenosyl-L: -methionine synthetase were over-expressed in YTA<ref name="pmid:19756991"/>. | ||
| + | |||
| + | A series of promoter-GUS fusion constructs containing a portion of the rice triosephosphate isomerase (tpi) promoter, the first tpi intron, and the gene encoding bacterial beta-glucuronidase (GUS) were made<ref name="pmid:8790301"/>. | ||
| + | |||
| + | A cDNA clone encoding rice (Oryza sativa L.) cytosolic triosephosphate isomerase (TPI), an important glycolytic enzyme, was isolated and characterized<ref name="pmid:8278510"/>. | ||
| + | |||
| + | In rice (Oryza sativa L.), cytosolic triosephosphate isomerase (TPI) is encoded by a single gene<ref name="pmid:12232342"/>. | ||
| + | |||
| + | Nuclear gene encoding cytosolic triosephosphate isomerase from rice (Oryza sativa L.)<ref name="pmid:8108523"/>. | ||
===Expression=== | ===Expression=== | ||
Revision as of 01:39, 13 May 2014
Please input one-sentence summary here.
Contents
Annotated Information
Function
Among the proteins hyper-accumulated in gid1 were osmotin, triosephosphate isomerase, probenazole inducible protein (PBZ1) and pathogenesis-related protein 10[1].
Triosephosphate isomerase, fructokinase II, DNA-binding protein GBP16 and ribosomal protein L3B were over-expressed in YTB, while oligopeptide transporter, floral organ regulator 1, kinase and S-adenosyl-L: -methionine synthetase were over-expressed in YTA[2].
A series of promoter-GUS fusion constructs containing a portion of the rice triosephosphate isomerase (tpi) promoter, the first tpi intron, and the gene encoding bacterial beta-glucuronidase (GUS) were made[3].
A cDNA clone encoding rice (Oryza sativa L.) cytosolic triosephosphate isomerase (TPI), an important glycolytic enzyme, was isolated and characterized[4].
In rice (Oryza sativa L.), cytosolic triosephosphate isomerase (TPI) is encoded by a single gene[5].
Nuclear gene encoding cytosolic triosephosphate isomerase from rice (Oryza sativa L.)[6].
Expression
Please input expression information here.
Evolution
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Labs working on this gene
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References
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Structured Information
| Gene Name |
Os01g0147900 |
|---|---|
| Description |
Triosephosphate isomerase, cytosolic (EC 5.3.1.1) (TIM) (Triose- phosphate isomerase) |
| Version |
NM_001048551.1 GI:115434515 GeneID:4325211 |
| Length |
3734 bp |
| Definition |
Oryza sativa Japonica Group Os01g0147900, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 1:2588835..2592568 |
| Sequence Coding Region |
2589074..2589121,2589214..2589296,2589414..2589492,2589622..2589716,2590198..2590330 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008394:2588835..2592568 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008394:2588835..2592568 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgggccgcaagttcttcgttggtggcaactggaaatgcaacgggaccactgatcaggtggacaaaattgtgaaaattctgaatgagggacagattgcttctacagatgttgttgaggtggttgtcagcccaccttatgtgttccttcccgtggtcaagagtcagctgcgcccggagatccaagttgctgctcagaattgttgggtgaagaagggcggggctttcaccggtgaggtcagcgctgagatgcttgtcaaccttagtattccctgggttattcttggacactctgaaaggaggagtttgttgggtgaatcaaatgagtttgttggagacaaagtggcatatgcgctctctcagggcttgaaggtcattgcatgtgttggtgagactctcgagcagcgggaatctggttcgaccatggatgttgttgctgcacaaacaaaagcaatttctgaaaggatcaaggattggactaatgtggttgttgcctatgaacctgtgtgggccattggaactggtaaagttgctacaccagatcaagcacaagaagtgcatgatggcctgaggaagtggctcgctgctaatgtcagtgcagaggttgctgaatcaacaaggatcatctatggaggttccgtaactggtgcgaactgcaaggagctggcagcaaagcctgatgttgatggttttctcgtcggtggtgcttcattgaagcctgaattcatcgacatcatcaactccgccaccgtgaagtccgcctaa</cdnaseq> |
| Protein Sequence |
<aaseq>MGRKFFVGGNWKCNGTTDQVDKIVKILNEGQIASTDVVEVVVSP PYVFLPVVKSQLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRSL LGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAISERIKDWTN VVVAYEPVWAIGTGKVATPDQAQEVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANC KELAAKPDVDGFLVGGASLKPEFIDIINSATVKSA</aaseq> |
| Gene Sequence |
<dnaseqindica>3448..3495#3273..3355#3077..3155#2853..2947#2239..2371#1884..1968#1406..1529#1197..1272#52..90#cccccccccccccccccgcgtccagttccatctaatcagcttctcgtcgagatgggccgcaagttcttcgttggtggcaactggaaatgcgtaatttttttctcttcctgcttgaaatctctagtcgcatgttcttgtgtctcggtgactcaggagaatttttgatttttttttctgttctggaacgcgatttagggagtgttcgttaggtggagataggagagattgtctctcgttttccgcgcgcacgcttttcaaactactaaacggtgcgttttttgcaaaaaatttcaataggaaagttgctttaaaaaatcatattaatccatttttgaaatttaaaatagttaatactcaattaatcatgagctaatggcttacctcgttttgcgtatcttcccaatctcctcaatccccttctcttcaaacactcccttagtgatttaagggtggagattgccatgaaggggatggatcttttttttttcttgaaacattaggagagatttttccacgctgatccagatcggtgtagaaaccaccctggttggttgagaagaatggatggatggcggggtttttgagatccggataatatatctgaagatttggtcttcgttttcagtccggtcctaatcctaggaaccagatgcgattagctgctacatatgctactcctacacgattagccgcgttttttggcgtttcaacgcgagacactcttagtgggaaatttggagttcactgatcttcaggtgttccatcttgcgcaaagtgtgatgtcgggtatgtttagctcggttcagacttcagagtctgaaacttttatgaggtgcatgcgtgtattatccagtgtctagaatttgtctctgacgtgaattatcaagtgtctagaatttaagtcagatcaaggagccaacacccggagatttattaatcaaatggtgcatattagcttttgtcaatcgtgatttctagctttgaactgttgttaacttacacaagaaacgcgtcatgcacttggagaacggtagtggtattgatgcttcttgtcgaatttctcgtatgcatatatgctgagaaatgcgaaagaaaagcacgggtattttgtgtgatttcaatgtcgtagtgtggtctgtatcaatcttcaaatatttgcttgctaaagactgacatgattcattttgatgtaacagaacgggaccactgatcaggtggacaaaattgtgaaaattctgaatgagggacagattgcttctacagatgttgttggtatgtgggactacgttgcagattgattccttttaagtgcgatattttctgtttttatcattcccacgaaatctgtatacaaaaaaactgcatggtaggacatgcttatcaatctggaaccattgtgctgcagaggtggttgtcagcccaccttatgtgttccttcccgtggtcaagagtcagctgcgcccggagatccaagttgctgctcagaattgttgggtgaagaagggcggggctttcaccggtgaggtcaggttagttatcagttctgtttcagttgtacacccaacatgctgtaatgatcaccagaaggttagctacaaacctacttgcagaaagatgcgccattacgctgtttgattaggtctcatatttaacatcacccagaaacaatgccatcttttcaagctagcatgccatcttttcaagctagcctgccttcacttggtattacatgttgcatgttgttatatttgctcagtcacagttagtgttgtatgattggcagtctcaatagccgtcttcgcttttaggcgaggttataagccattcaccattgaactcatcttttgtttaagttggttgttaatctattatttttaatgcagcgctgagatgcttgtcaaccttagtattccctgggttattcttggacactctgaaaggaggagtttgttgggtgaatcaaatgaggtatgatctagtttacattctatgaaatgtgcagatatgaattttgtatagttttagctggaaatagtgcaacaagccaaacctggggataacggtcactggagacaatattgtagctacttagctggcactaaatttgatcctaatccaatatatcaccaacttaattttacaaaggtgatcttgttcgctacaaattggtggatgatctgctgtgaggttttcgtatcataatcatctaatggtttcctgctctttcctgaattgcagtttgttggagacaaagtggcatatgcgctctctcagggcttgaaggtcattgcatgtgttggtgagactctcgagcagcgggaatctggttcgaccatggatgttgttgctgcacaaacaaaagcaatttctggtatctaacctctacttttggtctttttgactctgttgaattccttatccatttgtgtactcgtttgatctaaatggtttgctgttcgcctatatgttcaaatggtatctaggataattttccattcattgaagctttatcttgcgaaagttagttagatctcttttgatgcactactcatttcttgtttggctaaattctacacattctacatcagaaaaaaaaaatcttgctaaaagtcttataagccacttggttatcacatattcactatgtgggagcactctaaaaatgggaacatctggtgatcagatgaatccacaggcagtaatgtaatgtaatagttcaagtgattacttgttcaagtggttaatggtttaatctagaccttaatgtaatgtctcatagttagcatcatttgataaaagattagctcatcacatgagaattcaggctgaaatgactatggactgttttacagaaaggatcaaggattggactaatgtggttgttgcctatgaacctgtgtgggccattggaactggtaaagttgctacaccagatcaagcacaagaagtaagtttcttatattgataagcacacaaagtgttcattcatgaacttctgcacgttccataattgttacctatgctctagataaaatatcttgtttaaacaaccatctggtttgtattattgtatcaggtgcatgatggcctgaggaagtggctcgctgctaatgtcagtgcagaggttgctgaatcaacaaggatcatctatggaggtataaatctacagtatattttcttgaacaaacactttacgattgattgcacaagtgcaccttaggcgacaactgtcctggtgcctggacatgattgtttacatgattttgctacaggttccgtaactggtgcgaactgcaaggagctggcagcaaagcctgatgttgatggttttctcgtcggtggtgcttcattgaaggtaaagaataatacgaacacagtagaacgattgtacagacatgattacccgcctgattcactgaataccgtctccctttctttgttctgtagcctgaattcatcgacatcatcaactccgccaccgtgaagtccgcctaagatcttcaccccattcaccttcggcgtgggaagatgtctgaagaggatcatacctttttctgtgcttatgtaatgctagtagttttgtgctggagcagctactctttttcctccccttcacttccctgaagctacctgcagcttgagcaatgctaataatgcacaccactgaacatactaccataccaataatgtttagctccttttgtcgtgagttattatcatgtgagtttcagatc</dnaseqindica> |
| External Link(s) |
- ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedpmid:17080612 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedpmid:19756991 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedpmid:8790301 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedpmid:8278510 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedpmid:12232342 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedpmid:8108523
