Difference between revisions of "Os10g0419200"
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==References== | ==References== | ||
| − | + | * <ref name="ref1"> | |
| + | Changyin Wu, Changjun You, Caishun Li, Tuan Long, Guoxing Chen, Mary E. Byrne, and Qifa Zhang (2008). RID1, encoding a Cys2/His2-type zinc finger transcription factor, acts as a master switch from vegetative to floral development in rice. Proc. Natl. Acad. Sci. USA 105,12915 -12920. | ||
| + | </ref> | ||
| + | |||
| + | * <ref name="ref2"> | ||
| + | Inukai Y, Sakamoto T, Ueguchi-Tanaka M, et al. Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling[J]. The Plant Cell Online, 2005, 17(5): 1387-1396. | ||
| + | </ref> | ||
==Structured Information== | ==Structured Information== | ||
Revision as of 05:53, 16 May 2014
Please input one-sentence summary here.
Contents
Annotated Information
Function
Rice Indeterminate 1 (RID1) gene , which encodes a Cys-2/His-2-type zinc finger transcription factor, acts as the master switch for the transition from the vegetative to reproductive phase. Firstly, RID1 is controlling the phase transition and initiation of floral induction. In addition, the Hd3a/RFL1/FTL complex acts as the immediate inducer of flowering. Once the phase transition is induced with the activation of RID1, flowering signal is transduced and regulated through the various pathways and eventually integrated with FT-like proteins to induce flowering[1].
Expression
Please input expression information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this gene
National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research, Huazhong Agricultural University, Wuhan 430070, China
Department of Crop Genetics, John Innes Centre, Norwich NR4 7UH, United Kingdom
References
Structured Information
| Gene Name |
Os10g0419200 |
|---|---|
| Description |
Zinc finger, C2H2-type domain containing protein |
| Version |
NM_001071151.1 GI:115482045 GeneID:4348644 |
| Length |
2849 bp |
| Definition |
Oryza sativa Japonica Group Os10g0419200, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 10:15197103..15199951 |
| Sequence Coding Region |
15197103..15197850,15199375..15199798,15199894..15199951 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008403:15197103..15199951 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008403:15197103..15199951 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggcggcggcgcaggagccgagagccaagaagaagaggagcctccccggcaacccagacccggaggcggaggtgatcgcgctgtcgccgcgggcgctggtggcgacgaaccgcttcgtctgcgaggtctgcaacaaggggttccagcgcgaccagaacctgcagctccaccgccgcggccacaacctcccctggaagctccgccaccgcgccgccgctgtctccgccgtgacgacagcggcgccggcgccgaggaagagggtgtacgtgtgcccggagccgacgtgcgtgcaccacgacccggctcgggcgctgggcgacctgaccgggatcaagaagcacttctcgcggaagcacggggagaagcggtggcggtgcgagcggtgcgggaagaggtacgccgtgcactccgactggaaggcgcacgtcaagaactgcggcacccgcgagtaccgctgcgactgcggcatcctcttctccaggaaggacagcctgctgacacacagggccttctgcgatgccctagctgaagagagtgcaaggcttcttgctgctgcaaacaacagcagcagcatcactactaccacctgcaacaacagcaacatcagcagcaacaacaacaacaacaacattaacagcattagcaatagcaataatcttctgatcaccagcagcagcagctcaccaccactgttcctgccattctccaccactcctgctgaaaaccctaaccctaatcagctcctgttcctgcaacaacaccaagcagctcaccaccagctgcttcttcctcagttccagcagccaccctcctcgccgccggcctacttcgatcacctcgcattcggcggcggcggcggcgtcatcaccggcagcagctgcaacgacgacaatagctcgatcgccggcgatgtcatggtggctgcaggtggtgacagtgtcagcttcgggcttacctcggaaggctccgtgaccatgcacgccggcgacgtcggacggcgccggctcactagggacttcctcggcgtcgatcacgacgccggcgaggtcgacgagctcgagcttgatgagctgccggctgatctgtccaccaccgccgccgcctgccagggttgcaacttcgccgccgccaccaccgccgcctgctgcgccaccgacttcaccaccggcagcaggcagtacctcggccggctgccgccggtgaacgagacgtggagccacaacttctaa</cdnaseq> |
| Protein Sequence |
<aaseq>MAAAQEPRAKKKRSLPGNPDPEAEVIALSPRALVATNRFVCEVC NKGFQRDQNLQLHRRGHNLPWKLRHRAAAVSAVTTAAPAPRKRVYVCPEPTCVHHDPA RALGDLTGIKKHFSRKHGEKRWRCERCGKRYAVHSDWKAHVKNCGTREYRCDCGILFS RKDSLLTHRAFCDALAEESARLLAAANNSSSITTTTCNNSNISSNNNNNNINSISNSN NLLITSSSSSPPLFLPFSTTPAENPNPNQLLFLQQHQAAHHQLLLPQFQQPPSSPPAY FDHLAFGGGGGVITGSSCNDDNSSIAGDVMVAAGGDSVSFGLTSEGSVTMHAGDVGRR RLTRDFLGVDHDAGEVDELELDELPADLSTTAAACQGCNFAAATTAACCATDFTTGSR QYLGRLPPVNETWSHNF</aaseq> |
| Gene Sequence |
<dnaseqindica>2102..2849#154..577#1..58#atggcggcggcgcaggagccgagagccaagaagaagaggagcctccccggcaacccaggtgagcgagaaactgcctagctcttcttcttcttcttcttgcttgatcgatctcatctcaattctgctgtctcgccatggtgttggatcgatcagacccggaggcggaggtgatcgcgctgtcgccgcgggcgctggtggcgacgaaccgcttcgtctgcgaggtctgcaacaaggggttccagcgcgaccagaacctgcagctccaccgccgcggccacaacctcccctggaagctccgccaccgcgccgccgctgtctccgccgtgacgacagcggcgccggcgccgaggaagagggtgtacgtgtgcccggagccgacgtgcgtgcaccacgacccggctcgggcgctgggcgacctgaccgggatcaagaagcacttctcgcggaagcacggggagaagcggtggcggtgcgagcggtgcgggaagaggtacgccgtgcactccgactggaaggcgcacgtcaagaactgcggcacccgcgagtaccgctgcgactgcggcatcctcttctccaggtccggccacccccacgctcgccgttaaacacacacctttgattactatttattactactccctccatgctctaatacaacggattttgacattttacttgcactatttaactattcgtcttatttaaatttttttggaattattatttattttatttgtgacttactttattattcaaaatctttaaacacaacttctcgttttttatatttgcacaaattttttttaataagacgagtggtcaaaactacaaataaaatatcaaaatctcttatattagaggagagcgagtagctcttaattaaacttctttgcatatgctattgcattaaaaaagaacatctctgaaaaaaaaaacatggatggacactgatcaactaccaactgttaattcatcactacttcgagaggttttgagtattttggcagtataataccttgatatatatcttccaatttcgaagctagtgttcttcttcctgttcttgctcttgtttcctagctagcccaggctttctgaacttttagtccgaagttaagcatatactctcactggatctggtgttttatgtgaatttcatctgaaaattctgcatttgcaaacgggctttttgaaggtttcaatatgtgcttgttattaatctctaatgcatacatggtgcttatcatgtacgtcacacacacacacacacacacacacacacacacacacatatatatataatcatactcgaaagttttatatttcaaatatgtttttgaaaacctgcaaatcctgcatgcagctagctagctagtccggggcctttttcaatggttgggcatgcatgtggccatgagatctccatcagaatttcaaagccatcttcatcatcatatctgcatttgcaggaggcattgatggaaacacttcatttatagataatttgctgctgcagtaggatcgctttcttgctcccttttcttgccacagttcctgcattagcaattgaaatttaaggaggcagtttcaaggagcagatatagatatatattggcttatagttagctatagctagcagctgggggaccccaagatacacaataattatgtacactaagtttacacatgtaattaattatctatgcaacactaccaaaaatattgatctcaagaagttaattaattaaacagacactaaaaatctctaacatttaccctgcttgtagctctaactagcatgtaaatccatgaacctgaacatccaatgatcacacacgcgcacaaaccttggaaaagaaactaagctaatcatacggcaaggagacctttcttcaccaaagttaaatgcaactttacatgcatgcatgcgttcatcactgatcatgtgcacatcatcactactgttaccctacaaaatttgggaaatcaaacataaataatcactaaaaaactctttcatctgatcaatccacagtcgtccttaattaaattaacagttgacaaaaatacaataattccaattaattgttcatgcctgcaggaaggacagcctgctgacacacagggccttctgcgatgccctagctgaagagagtgcaaggcttcttgctgctgcaaacaacagcagcagcatcactactaccacctgcaacaacagcaacatcagcagcaacaacaacaacaacaacattaacagcattagcaatagcaataatcttctgatcaccagcagcagcagctcaccaccactgttcctgccattctccaccactcctgctgaaaaccctaaccctaatcagctcctgttcctgcaacaacaccaagcagctcaccaccagctgcttcttcctcagttccagcagccaccctcctcgccgccggcctacttcgatcacctcgcattcggcggcggcggcggcgtcatcaccggcagcagctgcaacgacgacaatagctcgatcgccggcgatgtcatggtggctgcaggtggtgacagtgtcagcttcgggcttacctcggaaggctccgtgaccatgcacgccggcgacgtcggacggcgccggctcactagggacttcctcggcgtcgatcacgacgccggcgaggtcgacgagctcgagcttgatgagctgccggctgatctgtccaccaccgccgccgcctgccagggttgcaacttcgccgccgccaccaccgccgcctgctgcgccaccgacttcaccaccggcagcaggcagtacctcggccggctgccgccggtgaacgagacgtggagccacaacttctaa</dnaseqindica> |
| External Link(s) |
- ↑ 1.0 1.1 Changyin Wu, Changjun You, Caishun Li, Tuan Long, Guoxing Chen, Mary E. Byrne, and Qifa Zhang (2008). RID1, encoding a Cys2/His2-type zinc finger transcription factor, acts as a master switch from vegetative to floral development in rice. Proc. Natl. Acad. Sci. USA 105,12915 -12920.
- ↑ Inukai Y, Sakamoto T, Ueguchi-Tanaka M, et al. Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling[J]. The Plant Cell Online, 2005, 17(5): 1387-1396.
