Difference between revisions of "Os03g0741100"
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==Annotated Information== | ==Annotated Information== | ||
===Function=== | ===Function=== | ||
| − | OsbHLH148 is a basic helix-loop-helix protein, which interacts with OsJAZ proteins in a jasmonate signalling pathway leading to drought tolerance in rice. The over-expressed OsbHLH148 can cause the up-regulation of some genes involved in stress responses and the jasmonate signalling pathway such as OsDREB and OsJAZ genes. OsbHLH148 acts in the initial response of jasmonates by forming an OsbHLH148–OsJAZ1–OsCOI1 signalling module in the upstream signalling pathway to improve drought tolerance in rice. | + | OsbHLH148 is a basic helix-loop-helix protein, which interacts with OsJAZ proteins in a jasmonate signalling pathway leading to drought tolerance in rice. The over-expressed OsbHLH148 can cause the up-regulation of some genes involved in stress responses and the jasmonate signalling pathway such as OsDREB and OsJAZ genes. OsbHLH148 acts in the initial response of jasmonates by forming an OsbHLH148–OsJAZ1–OsCOI1 signalling module in the upstream signalling pathway to improve drought tolerance in rice.<ref name="ref1" />. |
===Expression=== | ===Expression=== | ||
| − | As figure1 shows, OsbHLH148 transcript levels were rapidly increased by treatment with methyl jasmonate (MeJA) or abscisic acid, and abiotic stresses including dehydration, high salinity, low temperature and wounding.[[File:Expression.gif|thumb|right|Figure1: OsDREB148 was rapidly induced by 15 min of exposure to MeJA and was gradually responsive to drought | + | As figure1 shows, OsbHLH148 transcript levels were rapidly increased by treatment with methyl jasmonate (MeJA) or abscisic acid, and abiotic stresses including dehydration, high salinity, low temperature and wounding.[[File:Expression.gif|thumb|right|Figure1: OsDREB148 was rapidly induced by 15 min of exposure to MeJA and was gradually responsive to drought conditions（from reference<ref name="ref1" />）.]]<ref name="ref1" />. |
===Evolution=== | ===Evolution=== | ||
Revision as of 17:23, 18 May 2014
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Contents
Annotated Information
Function
OsbHLH148 is a basic helix-loop-helix protein, which interacts with OsJAZ proteins in a jasmonate signalling pathway leading to drought tolerance in rice. The over-expressed OsbHLH148 can cause the up-regulation of some genes involved in stress responses and the jasmonate signalling pathway such as OsDREB and OsJAZ genes. OsbHLH148 acts in the initial response of jasmonates by forming an OsbHLH148–OsJAZ1–OsCOI1 signalling module in the upstream signalling pathway to improve drought tolerance in rice.[1].
Expression
As figure1 shows, OsbHLH148 transcript levels were rapidly increased by treatment with methyl jasmonate (MeJA) or abscisic acid, and abiotic stresses including dehydration, high salinity, low temperature and wounding.
Evolution
Please input evolution information here.
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Labs working on this gene
Department of Agricultural Biotechnology, Seoul National University, Seoul 151-921, Korea
Division of Bioscience and Bioinformatics, Myongi University, Yongin 449-728, Korea
GreenGene Biotech Inc., Myongji University, Yongin 449-728, Korea
School of Biological Science, Seoul National University, Seoul 151-742, Korea
References
1. Ju-Seok Seo1, Joungsu Joo2, Min-Jeong Kim1, Yang Do Choi1 et al.(2011) OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice.The Plant Journal Volume 65, Issue 6:907–921
Structured Information
| Gene Name |
Os03g0741100 |
|---|---|
| Description |
Basic helix-loop-helix dimerisation region bHLH domain containing protein |
| Version |
NM_001057756.1 GI:115455240 GeneID:4334060 |
| Length |
2513 bp |
| Definition |
Oryza sativa Japonica Group Os03g0741100, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 3:31169988..31172500 |
| Sequence Coding Region |
31170066..31170542,31170910..31171197,31172163..31172297 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008396:31169988..31172500 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008396:31169988..31172500 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgcaaatggagtcgtactacggcgcgttccacgccgacgaggccgcgttcttcttcccccaccacgtgccggcgtcgccggagctgccgttcggcctcattgcgtcgccggagccggagccggagccggagcaggcggcggcggaggcgaggcagagcgcgttccaggagtacggcggcgcggtgcacgccggagcgccggcggcggcgggggctgtcaccaccggtgggacgaacatccaccggagggtgatggacgtgctgggcaggatgggcggcggcggcggcgggggggagaagggggagggtgaggagatggaggaggaggaggaggtgccgcagcggcggcggcgcgggcagggcgccgacgtggagagcagccgcggtttccgccacatgatgcgcgagcgccagcgccgcgagaagctcagccagagctacgccgacctctacgccatggtctcctctcgctccaagggggacaagaactcgatcgtgcagtcggcggcgatctacatccacgagctgaaggtcgcgagggaccagctgcagaggaggaacgaggagctgaaggcccagatcatgggccacgacgagcagcagccgtgcgtcacggtgcagttcgaggtcgacgagccgtcgtcgtcgatcgactccatgatcgccgcgctccggcggctcaagggcatgagcgtcaaggcgcgcgggatccggtcgagcatgtccgggaacaggctgtggacggagatgaacgtcgagaccacgattgcggcttgtgaagtggaaaaggcagtggaagaggctctcaaggaagtagagaggaaccagcctgacagcgatgccccatttcctggaagcaaaggctggacacagacatctcatgtgcaaaatgtgttttga</cdnaseq> |
| Protein Sequence |
<aaseq>MQMESYYGAFHADEAAFFFPHHVPASPELPFGLIASPEPEPEPE QAAAEARQSAFQEYGGAVHAGAPAAAGAVTTGGTNIHRRVMDVLGRMGGGGGGGEKGE GEEMEEEEEVPQRRRRGQGADVESSRGFRHMMRERQRREKLSQSYADLYAMVSSRSKG DKNSIVQSAAIYIHELKVARDQLQRRNEELKAQIMGHDEQQPCVTVQFEVDEPSSSID SMIAALRRLKGMSVKARGIRSSMSGNRLWTEMNVETTIAACEVEKAVEEALKEVERNQ PDSDAPFPGSKGWTQTSHVQNVF</aaseq> |
| Gene Sequence |
<dnaseqindica>79..555#923..1210#2176..2310#ggaaaccatcgccaaccatcacatctgatcgagaacaagaagaagaagaagaagaagcaagaacagcaagaggaagagatgcaaatggagtcgtactacggcgcgttccacgccgacgaggccgcgttcttcttcccccaccacgtgccggcgtcgccggagctgccgttcggcctcattgcgtcgccggagccggagccggagccggagcaggcggcggcggaggcgaggcagagcgcgttccaggagtacggcggcgcggtgcacgccggagcgccggcggcggcgggggctgtcaccaccggtgggacgaacatccaccggagggtgatggacgtgctgggcaggatgggcggcggcggcggcgggggggagaagggggagggtgaggagatggaggaggaggaggaggtgccgcagcggcggcggcgcgggcagggcgccgacgtggagagcagccgcggtttccgccacatgatgcgcgagcgccagcgccgcgagaagctcagccagagctacgccgacctctacgccatggtctcctctcgctccaaggttcgtcggcctcctctgctcacagcctaagcttatcactctcacttagtactctacttcacttcgccgctcacttcatttcaagctccatttcatctttcacctagattccatcgagaaatgcctaatgtagactgctaatttggccttctttaagctcagattttcgtttaccatcgcattgtcccatttcattggcttcaatttgcctcttcttgatttccccaatgttaatctgaaattcagagcatcttcagctcaaaccaattctgttcagcttcagaatgttcgaaatccccctttaatacctcttaaatggagtgtttaccaaaatcgggctgacaaaaaaccgttcgtgtcactgcagggggacaagaactcgatcgtgcagtcggcggcgatctacatccacgagctgaaggtcgcgagggaccagctgcagaggaggaacgaggagctgaaggcccagatcatgggccacgacgagcagcagccgtgcgtcacggtgcagttcgaggtcgacgagccgtcgtcgtcgatcgactccatgatcgccgcgctccggcggctcaagggcatgagcgtcaaggcgcgcgggatccggtcgagcatgtccgggaacaggctgtggacggagatgaacgtcgagaccacggtgagagctctctctctctctctctctctctctccccccccccccccccccccccccccccccccccccccccttggcttgcaattcttgaaaatttttgcattttttcccctctgaacttagcctacctgccttgttgacagtaactgtcagagttttaattaggttaggaaagatgcagcagttcgtctcctacaagattagcctcattttcgtgttttatcaatacactgtatcttgccttggatagctacggattagattgttacgtacagtagtagataggaaaccgtagtggcaacgggataactggataaggatgaagagttctaatcaacttcagaaatggaagatggaagcatattggttgggagaatttgggctatttttttttcgaataagaagaatttgggctaaattagagaagcatcagagtaacgtttccgaaggaaaagattagtgcagtaattttgctgaactattttatatcctgtccacttgaggtcaagatgcaggaattccactcgaaaccccccaatttgacattagtcaaccgtgtcaagagttcttgtcgaatcttttggtttatgcataaatcatttagcagatcctcaaccccaagaccccaattacaaatagctgtaattagaggtttaattaatcagcaactgttgttagttagcactggtcatccaactgccaaatcaatctttcctcaaaagattattacaagtagttcacaaacatccaaacatgatctttcaaaaggaaacatccaaattccaaacagccataccatattttatactacagagcaacaatcggggccaattacagtccatgcctatccaatattaaactgaaaaagtttattataattataacactagcagttgattaataatagtaagccaattgtacactctaactaacgacgtttaatttcgcatgtgtcattttcacagattgcggcttgtgaagtggaaaaggcagtggaagaggctctcaaggaagtagagaggaaccagcctgacagcgatgccccatttcctggaagcaaaggctggacacagacatctcatgtgcaaaatgtgttttgatcggttttgaaacatgatcctgctgggacccccatttgttcatttttttaaaagcttgtgatggagcaagtggaaaaaaaatctccatatctccttgtcaatgtaccttttttttgtccatgtagatacaatcatacaaataatagcttcctctcttttctacaaggaaaaaagaaagagaagagtacaaaaaagatttaagc</dnaseqindica> |
| External Link(s) |
