Difference between revisions of "Os06g0669400"
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| − | + | This gene encodes FtsH protease 2 (OsFtsH2) in Oryza sativa, homologue of AtFtsH2/8. | |
==Annotated Information== | ==Annotated Information== | ||
Revision as of 02:38, 19 May 2014
This gene encodes FtsH protease 2 (OsFtsH2) in Oryza sativa, homologue of AtFtsH2/8.
Contents
Annotated Information
Function
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Expression
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Evolution
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Labs working on this gene
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References
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Structured Information
| Gene Name |
Os06g0669400 |
|---|---|
| Description |
Similar to FtsH protease (VAR2) (Zinc dependent protease) |
| Version |
NM_001064856.1 GI:115469443 GeneID:4341796 |
| Length |
3459 bp |
| Definition |
Oryza sativa Japonica Group Os06g0669400, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 6:28601612..28605070 |
| Sequence Coding Region |
28601758..28602099,28602344..28602584,28602685..28602998,28603327..28604202,28604262..28604318 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008399:28601612..28605070 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008399:28601612..28605070 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>agctcgcgcttgggaacctcggggtcgggcttcccaccttgttgggtgctaagagagtatctagacaaggacagagtgaagaaggttgatttgtttgagaatggcacgattgccattgtagaggctatttctcctgagctcggcaaccgtgtgcagagagttcgtgtgcagcttcctggtctaagccaggagcttctccagaagttgagggaaaagaatatcgattttgctgcacacagcaaccaggaggactctggttctcttctgttcaacctgatcggaaacttggctttcccacttatccttattggtggtctatttttgctgtcaagaagagcacaaggtggccttggtggacctaacggtcctggctttccccttggttttggtcaatctagggccaagtttcagatggaacccaacactggtgttacatttgatgatgttgctggtgtcgatgaagcaaagcaagacttcatggaagtggttgagttcttgaagaaaccagaaaggttcaccgctgttggtgctcgcatccctaagggtgttctgcttgttggtcctcctggaactggtaagactttgcttgccaaggctattgcaggggaagctggtgtgccgtttttctcgatatcaggatctgagtttgtggagatgtttgtcggagttggtgcctcccgggttcgtgatctcttcaagaaggcaaaggagaatgctccttgcatagtatttgttgatgaaattgatgctgttgggaggcaaagagggacaggtattggtggtggaaatgatgaaagggagcagactttgaatcagttgctgactgagatggatggttttgaggggaacactggaatcattgttattgctgccaccaacagggctgatatcctggattctgctttactcagacctggacgttttgacagacaggtaagtgttgatgttcctgatgtacgcggaaggacagagattcttaaggtgcacggtagcaacaagaagttcgatactgatgtctctcttgaagtcatagcaatgagaacacctggctttagtggagcagacttggcaaatcttctaaatgaagcagccatattagcgggccgacgtggtcggacagcaatttcctcaaaggagattgatgattcaattgacagaatagtggctggtatggaaggaactgtgatgacagatgggaagagcaaaagtcttgttgcttaccatgaagttgggcatgcaatttgtggaactttgacgcctggccacgaccctgtccaaaaggttactttgatcccgaggggtcaagctcgtggtctcacatggttcattccaatggacgacccaacgctcatctccaggcaacaactgttcgccagaattgttggtggccttggcggtcgtgctgctgaggagatcatttttggggagcctgaggtgaccacaggagctgctggtgacttgcagcaaattactggcctagccaagcagatggtggttacattcggtatgtcggacattggtccgtggtcgctaatggactcaggagctcagagcggcgatgtcatcatgaggatgatggcaaggaactccatgtcggagaagctcgcggaggacatcgataccgctgtgaagcggttgtccgatgaggcctacgagatcgctttgagccagatcaggagcaaccgggaggccatggacaagatcgtggaggtgctccttgagaaggagacattgagtggtgacgagttcagggcgattctctccgagttcacggagatccctgtcgagaaccgggttcccccagccacgccggcagctctccctgcctaa</cdnaseq> |
| Protein Sequence |
<aaseq>SSRLGTSGSGFPPCWVLREYLDKDRVKKVDLFENGTIAIVEAIS PELGNRVQRVRVQLPGLSQELLQKLREKNIDFAAHSNQEDSGSLLFNLIGNLAFPLIL IGGLFLLSRRAQGGLGGPNGPGFPLGFGQSRAKFQMEPNTGVTFDDVAGVDEAKQDFM EVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE MDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVSVDVPDVRGRTEILKVHGSNKK FDTDVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGRTAISSKEIDDSIDRIVAGME GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLIPRGQARGLTWFIPMDDPTL ISRQQLFARIVGGLGGRAAEEIIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSDIGP WSLMDSGAQSGDVIMRMMARNSMSEKLAEDIDTAVKRLSDEAYEIALSQIRSNREAMD KIVEVLLEKETLSGDEFRAILSEFTEIPVENRVPPATPAALPA</aaseq> |
| Gene Sequence |
<dnaseqindica>2972..3313#2487..2727#2073..2386#869..1744#753..809#agttcggcccaccccccccccctctcccctccacgccccgctccgatccactcaggtgcgtgctcgtttgctttggattcagtgcttccctttacgatttcgcttgcgtgcgtgggtgcgtgcgtctggttctgtttctagcttgaatccagtgtgtaagtgtgtggcgtttggtctctgatgcgatgcggatgttctgtttgttagccagtatgcttttcggaatttggagtactggtctagctttttactggtaaagatggtgggactgagatcgttagcgtgttcgttccaatcgataggttaatcagcaagtagaagctacggtgagctactgaattcggatttcatactggtttggggatgatggttgtagctgtttgtagttcgagaagggattacaatagcttctacttgtaggggtgattgtgaagagatgctttacctttgttcttgaatacttacggtaggacagcttgttagttacagctaagttggattgatatgaagtgattagcttagttgaagtatcggatgaagcaatttctgccatacaacacttgtatgattgacaagatctccctttcattacttttaacagtgagcgaagatggctccaacatccatgagccttgctgcaaagacgccgcttcccttctcgacacttccttcgagtggcgttgcacagaggccagtttctgtgactgcctccctcgagcacaagactaatgatgccagaaggaagttcctaaagctcgcgcttgggaacctcggggtcgggcttcccaccttgttgggtgctaagagagctcttgctgaagagcaaggtgtctcgtcgtcgagaatgtcttactcgaggttccttgagtatctagacaaggacagagtgaagaaggttgatttgtttgagaatggcacgattgccattgtagaggctatttctcctgagctcggcaaccgtgtgcagagagttcgtgtgcagcttcctggtctaagccaggagcttctccagaagttgagggaaaagaatatcgattttgctgcacacagcaaccaggaggactctggttctcttctgttcaacctgatcggaaacttggctttcccacttatccttattggtggtctatttttgctgtcaagaagagcacaaggtggccttggtggacctaacggtcctggctttccccttggttttggtcaatctagggccaagtttcagatggaacccaacactggtgttacatttgatgatgttgctggtgtcgatgaagcaaagcaagacttcatggaagtggttgagttcttgaagaaaccagaaaggttcaccgctgttggtgctcgcatccctaagggtgttctgcttgttggtcctcctggaactggtaagactttgcttgccaaggctattgcaggggaagctggtgtgccgtttttctcgatatcaggatctgagtttgtggagatgtttgtcggagttggtgcctcccgggttcgtgatctcttcaagaaggcaaaggagaatgctccttgcatagtatttgttgatgaaattgatgctgttgggaggcaaagagggacaggtattggtggtggaaatgatgaaagggagcagactttgaatcagttgctgactgagatggatggttttgaggggaacactggaatcattgttattgctgccaccaacagggctgatatcctggattctgctttactcagacctggacgttttgacagacaggttagtttttatccactgaacattcttttggatgtgaacatctgttgtattctagtttttaactcattcaattgtgacacaattaagtaaaaatgtttcagctatagcgtttacctttgttctgtattattgaagttctcacgtggttttaggctagaagtccaataaatactcgttcttggttgtagcttactcacgcaatcagtttggatgcttttggtttcgagcttgagttatctttgagtgttctcaaagttagaattttgttatcctcatatgtccaaaaccttgctaacattatggatataccttttaacttgttgcacaggtaagtgttgatgttcctgatgtacgcggaaggacagagattcttaaggtgcacggtagcaacaagaagttcgatactgatgtctctcttgaagtcatagcaatgagaacacctggctttagtggagcagacttggcaaatcttctaaatgaagcagccatattagcgggccgacgtggtcggacagcaatttcctcaaaggagattgatgattcaattgacagaatagtggctggtatggaaggaactgtgatgacagatgggaagagcaaaagtcttgttgcttaccatgaagttgggcatgcaatttgtgggtaagagataatctgcatatttgctaactgtgcttttgtttattacttgcatatcaaaattccgtgcaactattcatatctggaaatgtattctttgtagaactttgacgcctggccacgaccctgtccaaaaggttactttgatcccgaggggtcaagctcgtggtctcacatggttcattccaatggacgacccaacgctcatctccaggcaacaactgttcgccagaattgttggtggccttggcggtcgtgctgctgaggagatcatttttggggagcctgaggtgaccacaggagctgctggtgacttgcagcaaattactggcctagccaagcaggtacgctatatttctattctagaactttgctaattgatctacagaaactttgaagcagtagactatgtaatctgttctgcttctgcaccttttatgacttacaaaccagtctggaggataaatttgctgcaaaataacatgctagaaaaactgacagcatttacatatatattaaacatctgttcttagtccttcccctttctttcttttgctaattacacctggggtcacaatgcttctgcagatggtggttacattcggtatgtcggacattggtccgtggtcgctaatggactcaggagctcagagcggcgatgtcatcatgaggatgatggcaaggaactccatgtcggagaagctcgcggaggacatcgataccgctgtgaagcggttgtccgatgaggcctacgagatcgctttgagccagatcaggagcaaccgggaggccatggacaagatcgtggaggtgctccttgagaaggagacattgagtggtgacgagttcagggcgattctctccgagttcacggagatccctgtcgagaaccgggttcccccagccacgccggcagctctccctgcctaaatcccactagttttgtaggaatggaacatgctgtaagatgttcatattttcgattcttggtgtacactaactttactttgccggccggattttttggcatactacatgtaacttactcttggttaattataaaatgtaattagctg</dnaseqindica> |
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