Difference between revisions of "Os05g0458400"
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| − | + | This gene encodes ATP-dependent zinc metalloprotease FTSH 8, mitochondrial, homologue of AtFtsH3/10. It is a predicted gene base on homology comparison. | |
==Annotated Information== | ==Annotated Information== | ||
Revision as of 02:56, 19 May 2014
This gene encodes ATP-dependent zinc metalloprotease FTSH 8, mitochondrial, homologue of AtFtsH3/10. It is a predicted gene base on homology comparison.
Contents
Annotated Information
Function
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Expression
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Evolution
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Labs working on this gene
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References
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Structured Information
| Gene Name |
Os05g0458400 |
|---|---|
| Description |
Similar to AAA-metalloprotease FtsH |
| Version |
NM_001062280.1 GI:115464290 GeneID:4339002 |
| Length |
5798 bp |
| Definition |
Oryza sativa Japonica Group Os05g0458400, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 5:22564129..22569926 |
| Sequence Coding Region |
22564340..22564406,22564498..22564728,22564835..22564909,22565567..22565700,22566145..22566630 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008398:22564129..22569926 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008398:22564129..22569926 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgagcctcgcctcgctcgcccgcgcgctctcccgccgctccgcgccctcctcctcccgcgcgcgccagggtttctccctcggtgggctaggtgggaccaccaggtcgccgccgccgccgtcgtcgccgctcccatcgctccatggcggggagggcggtgggctgggattgggattcgtccgcgggtacctgacggcggcgctggggaggcccgccgcggtgaaggctgggacagactggaggtccatcctcgcgaacccgcagttccggaggctcttctctgacgggtccaagaagaattacgagaactactaccccaagggcaagaaggaggcgccgaagggggatgggagtaacaagtctgattcgaagcaagattcaagtacagacgatcaatggaatttccaggagactgcctcaaagcaattgcaaaattttctggcacctctactgtttcttggactgatgctctcgtccttgtcgtcgagctcatcagaccaaaaggagataagcttccaggaattcaagaataagctactagaacctggtttagttgaccgcattgttgtttcaaataaatcagtggcaaaggtctatgtcaggagttcaccacagtcgaacagccaaggtcagaacactgatgccatcattaccaccaatgatgttccgagcaagcatactcccagcagatacaagtattacttcaatattggaagtgttgattcctttgaagaaaagttagaggaagcccaggaagctttgggagtagatccacatgattttgttccagtaacttatgttgctgaagtgaattggttccaagaagtaatgagatttgccccaacagtctttcttgttgggctaatatatttgatgagcaaaagaatgcagagtggttttaatattggaggtggacctggcaagggtggccgtggtatttttaatattggaaaagctcaggtgacgaagatggacaaaaattccaaaaacaaggtgttttttaaggatgtagctggttgtgatgaagctaagcaagaaataatggagtttgtgcatttccttaagaatcccaagaagtatgaagagttaggagctaagataccaaaaggtgccttgcttgtgggtcctcctggaacaggcaagactctgcttgccaaagctacagcaggagagtctggtgtgcccttcctgtctatttctggatcagatttcatggaaatgtttgttggggttggaccatccagggtacggaacttattccaagaagctcggcaatgtgctcccagtattatatttattgatgagatcgatgcgattggtcgtgcaagaggccgtggagggttttctggttcaaatgatgagcgtgaaagtactttgaaccagctgcttgtagagatggatgggtttggtacaacttctggtgttgttgttcttgctggtacaaataggcctgatattttagataaagccttgctaaggcctggaagatttgatcgccaaataacaatagacaagccagatataaagggccgtgatcaaatattccgcatatatcttaaaaaacttaaacttgacaatgagccatcattttattcgcaaaggctagcggctttgacacctggatttgcaggagctgacattgccaatgtttgtaatgaagctgctttaattgctgcgagaagtgaggaaactcagattaccatgcaacattttgaatctgcaattgatagaattattggtggtttggagaagaaaaacaaggtcatcagcaaactggagcgccgcactgttgcttaccatgaatctggtcatgctgttgctggatggtttttagagcatgcagagcctcttctgaaagttacaattgttccccgtggaacagctgctttaggatttgcacagtatgttccaaatgaaaatcttttgatgacaaaagaacagctttttgatatgacatgcatgacattaggtggccgagctgcagaggaggttttgattggaaggatctccactggtgctcagaatgacctggagaaagttaccaaaatgacctatgcgcaggttgctgtatacggtttcagcgaaaaggttgggcttctgtccttccctcagagggacgatggctttgaaatgaccaaaccttacagcaaccaaacagcatccatcatcgacgatgaggtgagggaatgggttggcaaggcgtacaaaaaaacagtggaactgataactgagcacaaggagcaagtcgccaaaatcgctgaaatgctgcttgagaaggaggtcctccaccaggacgatttggttagggtattaggagaacggcctttcaaggcatccgagccaactaactacgacctcttcaagcaagggttccaggatgaagaagacagcaagaaccaagaggcggccaaaacccctcagcctgatgatgacggaacaccctcgcttggcgaggttgtacccacgtaa</cdnaseq> |
| Protein Sequence |
<aaseq>MSLASLARALSRRSAPSSSRARQGFSLGGLGGTTRSPPPPSSPL PSLHGGEGGGLGLGFVRGYLTAALGRPAAVKAGTDWRSILANPQFRRLFSDGSKKNYE NYYPKGKKEAPKGDGSNKSDSKQDSSTDDQWNFQETASKQLQNFLAPLLFLGLMLSSL SSSSSDQKEISFQEFKNKLLEPGLVDRIVVSNKSVAKVYVRSSPQSNSQGQNTDAIIT TNDVPSKHTPSRYKYYFNIGSVDSFEEKLEEAQEALGVDPHDFVPVTYVAEVNWFQEV MRFAPTVFLVGLIYLMSKRMQSGFNIGGGPGKGGRGIFNIGKAQVTKMDKNSKNKVFF KDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGES GVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSG SNDERESTLNQLLVEMDGFGTTSGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDI KGRDQIFRIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARSEETQI TMQHFESAIDRIIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVP RGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEEVLIGRISTGAQNDLEKVTK MTYAQVAVYGFSEKVGLLSFPQRDDGFEMTKPYSNQTASIIDDEVREWVGKAYKKTVE LITEHKEQVAKIAEMLLEKEVLHQDDLVRVLGERPFKASEPTNYDLFKQGFQDEEDSK NQEAAKTPQPDDDGTPSLGEVVPT</aaseq> |
| Gene Sequence |
<dnaseqindica>212..278#370..600#707..781#1439..1572#2017..2502#2682..3449#4195..4422#5122..5601#ggtaaaacgccttctccccctcctcttccgccgccgcggcgatccctctttcacctccacctccacctgctcaggacgcggccacgcagtagtcgcggagaaaagaaaccgaaaagaaaaaaaaaaatctagctacgcatctcggcccggcccccccgccgccgcgcgctcggatcccccgacggctcgccgccacggcgccgccgccgccatgagcctcgcctcgctcgcccgcgcgctctcccgccgctccgcgccctcctcctcccgcgcgcgccaggcaagtctccgccctctccctcttatcttccctgaatcttccgccaccgcgtctgggtggggggctgattgtgtggatggcttttttttagggtttctccctcggtgggctaggtgggaccaccaggtcgccgccgccgccgtcgtcgccgctcccatcgctccatggcggggagggcggtgggctgggattgggattcgtccgcgggtacctgacggcggcgctggggaggcccgccgcggtgaaggctgggacagactggaggtccatcctcgcgaacccgcagttccggaggctcttctctgacgggtccaagaagagtgagtcccatccgcccttttttgatcggttcggatggatggctttaggtgctaaaagtttgtggttgtgtttttgtgtgtgtgtgtgtatttttatgatttttagattacgagaactactaccccaagggcaagaaggaggcgccgaagggggatgggagtaacaagtctgattcgaagcgtaagttgccgtcttttttttctcggttgcatcatttgtttgtgtggagaatggtgatcatgttgtgaaattaatagaatgcactgcacagcttttaatacaatagcatgtaactggtgtactgattgtcattgaaccaacgaggtgaataatcaggacatgttatttttcttgcgctgcaagtgcttggtcgactgatgccaaatggaaaaatagcttgtgtagtgcaaccaatgatggcttgtgagcctatggtgtacaaccacttacttgtcagtgttcttaaaaaacgaatgcaaactagatccttgttcagttttaaaaaaatgcagggatacactgtaatttagtataaaaactcagaacctcagtggttatctaacttaagaggctgaaccgctgaaccaaataaacacagtagcacagaaagttccagattttggtctttgctagatcgttagttctctggaaattaaaacgtgccgctgacctagcactttcatcttaataatttctttgggagattagtacgggttttgatggagattggagcctagattttagtggctggaatgccaagagtccttttgagggcaacaaaataataaactcttagtgcatcattgcgtgtgggctaatgtctggtttgatatgcagaagattcaagtacagacgatcaatggaatttccaggagactgcctcaaagcaattgcaaaattttctggcacctctactgtttcttggactgatgctctcgtccttgtcgtcgagctcatcagaccaaaaggaggtaatttttcactcccttctgagttctgacagattatattcacttgttctgctatgcacatgaatctcttcctatatactagaaaaaagtggatggaagaaaactatgttgcgattataaggactataaaagttgtacttaccccaatcaaattactgcaatcagctattgagcattctgtaataaatagttcaatacaagcagtactagatccagatggcagcaatacattcttctcaccgtgaagttttatcttaaactgacaaatggtagagaaaatacctgccgctcctctttagatggtttcaccttatgcctgcaccagtcaacatatagcagacaactgattttgtggttgcatatttattctttttaaatctatggtgaacaattattctcgatcttaaatggaatctcaagatattttgcttcaaatttctgcagataagcttccaggaattcaagaataagctactagaacctggtttagttgaccgcattgttgtttcaaataaatcagtggcaaaggtctatgtcaggagttcaccacagtcgaacagccaaggtcagaacactgatgccatcattaccaccaatgatgttccgagcaagcatactcccagcagatacaagtattacttcaatattggaagtgttgattcctttgaagaaaagttagaggaagcccaggaagctttgggagtagatccacatgattttgttccagtaacttatgttgctgaagtgaattggttccaagaagtaatgagatttgccccaacagtctttcttgttgggctaatatatttgatgagcaaaagaatgcagagtggttttaatattggaggtggacctggcaagggtggccgtggtatttttaatattggaaaagctcaggtgacgaagatggacaaaaattccaaaaacaaggttagttcattctcttcttctgttctactttgaaacgactgtcaaatatgaaatatatacatgcacattgattctcaagctctgctagttccacctattcaataatgcagtagctactgcttaaacgttgttaagttacaataaaaactgtataatgacaagcttttctgttggtccaggtgttttttaaggatgtagctggttgtgatgaagctaagcaagaaataatggagtttgtgcatttccttaagaatcccaagaagtatgaagagttaggagctaagataccaaaaggtgccttgcttgtgggtcctcctggaacaggcaagactctgcttgccaaagctacagcaggagagtctggtgtgcccttcctgtctatttctggatcagatttcatggaaatgtttgttggggttggaccatccagggtacggaacttattccaagaagctcggcaatgtgctcccagtattatatttattgatgagatcgatgcgattggtcgtgcaagaggccgtggagggttttctggttcaaatgatgagcgtgaaagtactttgaaccagctgcttgtagagatggatgggtttggtacaacttctggtgttgttgttcttgctggtacaaataggcctgatattttagataaagccttgctaaggcctggaagatttgatcgccaaataacaatagacaagccagatataaagggccgtgatcaaatattccgcatatatcttaaaaaacttaaacttgacaatgagccatcattttattcgcaaaggctagcggctttgacacctggatttgcaggagctgacattgccaatgtttgtaatgaagctgctttaattgctgcgagaagtgaggaaactcagattaccatgcaacattttgaatctgcaattgatagaattattggtggtttggagaagaaaaacaaggtaatgtgaatatgtgattatgtgccagtttgaagataatctactccaaactgttaaagcaataaatgcaacctgcaaagctgattagtgcctgatttacacattactccagcattgtgtagttctgtatagtgctctcatgtgaaccggttatgctctattttgatacacattttttgctggtttaatgactatggaagttttgtttttttaaaaaaacaaaaacaaaagaacggtacataatgactagtgcattcattaagttcctgttctaggtggaccttaattaagttaagtgatttgtgaatgtggcatgatagttcgtgtagatcactagatggttgatcatgcatgaatgtttaggtgagagtgctgtaaacaaggtaaactatataaaataagtagtggatctacatgcaaatataaaaaactctaggtcttactcagaaatggatggtcacttaagtgtacgcaaaataatgatttctgaaatttgtggctttgcacacacaatatctgcagtatgtttcccttttggaatgcccaagccataactgttttttcacctttaacttgttccatagtaaatatataaaatatctactttcagtaagggagtaatgcacagatcaatgcttagtaacttagtaactttcttttatatgaaatgacttgttctcaacatgtgatagtcatgtttccccatttatttttcttacctcttagcctgttaatcaaattgcaggtcatcagcaaactggagcgccgcactgttgcttaccatgaatctggtcatgctgttgctggatggtttttagagcatgcagagcctcttctgaaagttacaattgttccccgtggaacagctgctttaggatttgcacagtatgttccaaatgaaaatcttttgatgacaaaagaacagctttttgatatgacatgcatgacattaggtggccgagctgcagaggaggtacacactaattcttttacagtcttatgactgatttatgttaatagctaccttttgtggatatatctttcaaattcctactgctgagtgctgacacaccatttcttttcagtcttcttatgacagcatgcgtgttatgtttttatgactagaacgaatacaaggtttttctgcatttgacagctgtaaaaaaattaaaaaaaaatggttaactaggttacagtttacacattcaattatgatgacttggtgaatacgagtaatattatcacaatttggtagtcaaactcttgttggtttggttacatcaagacttctaaccatttatgactctaaccagaaaggcaaattgatgtttgtgtgtcttcatattacactgttggttagcatgaattctttgatgtttaacatggtactttctttttttgcttggaccatatgcttatgtacggcgagactcgacatggattgccgtcatgccatttgattactttaacatcggtcctctctcattattttcagcttcttccatacattttacttattgtcatataacataatgaaataacaataagccaatccaagtgctgggttgtggtatttgttcattccatatttccatgattacgctgtcaaatcgttcacaatgttggcagtggaatgatacctaatgtagatgttttgattgccttgttacaggttttgattggaaggatctccactggtgctcagaatgacctggagaaagttaccaaaatgacctatgcgcaggttgctgtatacggtttcagcgaaaaggttgggcttctgtccttccctcagagggacgatggctttgaaatgaccaaaccttacagcaaccaaacagcatccatcatcgacgatgaggtgagggaatgggttggcaaggcgtacaaaaaaacagtggaactgataactgagcacaaggagcaagtcgccaaaatcgctgaaatgctgcttgagaaggaggtcctccaccaggacgatttggttagggtattaggagaacggcctttcaaggcatccgagccaactaactacgacctcttcaagcaagggttccaggatgaagaagacagcaagaaccaagaggcggccaaaacccctcagcctgatgatgacggaacaccctcgcttggcgaggttgtacccacgtaatcctgcagcaaatttacagctgtaaattgcactcctattcgatagattcttgtttgttgttgcagcataagaaaatttgtataaattaacgccctcgcctaatctctgatgtgggaacccagttggcttttcgccggccatagtgtttccctgttttaaatgaatacgaagagctagtcgaggatcatgatttgagc</dnaseqindica> 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