Difference between revisions of "Os04g0615000"
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==References== | ==References== | ||
| − | + | 1. Mingliang Chen;Ju Luo;Gaoneng Shao;Xiangjin Wei;Shaoqing Tang;Zhonghua Sheng;Jian Song;Peisong Hu | |
| + | Fine mapping of a major QTL for flag leaf width in rice, qFLW4, which might be caused by alternative splicing of NAL1 | ||
| + | Plant Cell Reports, 2011, 31(5): 863-872 | ||
| + | 2. Jing Qi;Qian Qian;Qingyun Bu;Shuyu Li;Qian Chen;Jiaqiang Sun;Wenxing Liang;Yihua Zhou;Chengcai Chu;Xugang Li;Fugang Ren;Klaus Palme;Bingran Zhao;Jinfeng Chen;Mingsheng Chen;Chuanyou Li | ||
| + | Mutation of the Rice Narrow leaf1 Gene, Which Encodes a Novel Protein, Affects Vein Patterning and Polar Auxin Transport | ||
| + | Plant Physiology, 2008, 147(4): 1947-1959 | ||
==Structured Information== | ==Structured Information== | ||
Revision as of 02:28, 20 May 2014
Please input one-sentence summary here.
Contents
Annotated Information
Function
Nal1 affects rice auxin polar transportation and plays an important role in the lateral growth of blade because of adjusting arrangement mode of the tube bundle. Besides, Nal1 influence rice internodes cell division.
Expression
nal-1 localized in chromosome 4, the length of its cDNA is 2168 bp. It contains five exons and encoding a protein with 582 amino acid.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this gene
Please input related labs here.
References
1. Mingliang Chen;Ju Luo;Gaoneng Shao;Xiangjin Wei;Shaoqing Tang;Zhonghua Sheng;Jian Song;Peisong Hu
Fine mapping of a major QTL for flag leaf width in rice, qFLW4, which might be caused by alternative splicing of NAL1 Plant Cell Reports, 2011, 31(5): 863-872
2. Jing Qi;Qian Qian;Qingyun Bu;Shuyu Li;Qian Chen;Jiaqiang Sun;Wenxing Liang;Yihua Zhou;Chengcai Chu;Xugang Li;Fugang Ren;Klaus Palme;Bingran Zhao;Jinfeng Chen;Mingsheng Chen;Chuanyou Li
Mutation of the Rice Narrow leaf1 Gene, Which Encodes a Novel Protein, Affects Vein Patterning and Polar Auxin Transport Plant Physiology, 2008, 147(4): 1947-1959
Structured Information
| Gene Name |
Os04g0615000 |
|---|---|
| Description |
Hypothetical protein |
| Version |
NM_001060401.1 GI:115460531 GeneID:4336986 |
| Length |
2575 bp |
| Definition |
Oryza sativa Japonica Group Os04g0615000, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 4:31610701..31613275 |
| Sequence Coding Region |
31611375..31611492,31611830..31612335 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008397:31610701..31613275 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008397:31610701..31613275 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgtttcatccattaccacccaatcttgggcctggcgtttatcttggagctgttgaaagagcaacttctttcatcacagatgacgtttggtatggaatctatgctggaacaaacccagagacatttgtacgagctgacggtgcatttatcccatttgctgatgactttgacatttccaccgtcacgactgtagttaggggagtcggtgacattggggatgtcaaggttatagatctgcagtgtccgctcaatagcctcatagggaggcaagtatgcaaagttggcagaagctctggtcacacaactgggactgtgatggcctatgcccttgagtacaatgacgagaaaggaatatgcttcttcacagacatccttgttgttggtgagaaccgccaaacatttgatttggaaggtgatagcggaagccttattatcctgactagccaagatggtgagaagccgcgtccaattggaattatatggggtggcacagcaaatcgtgggaggttgaagcttacaagtgatcatggccctgaaaactggactagtggggttgatcttggccgtctactcgaccgtctggaacttgatattatcattaccaatgaatcactccaaggttga</cdnaseq> |
| Protein Sequence |
<aaseq>MFHPLPPNLGPGVYLGAVERATSFITDDVWYGIYAGTNPETFVR ADGAFIPFADDFDISTVTTVVRGVGDIGDVKVIDLQCPLNSLIGRQVCKVGRSSGHTT GTVMAYALEYNDEKGICFFTDILVVGENRQTFDLEGDSGSLIILTSQDGEKPRPIGII WGGTANRGRLKLTSDHGPENWTSGVDLGRLLDRLELDIIITNESLQG</aaseq> |
| Gene Sequence |
<dnaseqindica>675..792#1130..1635#caagattcatcgcaagatttgctagtacaaagtggataaattttcatggcactctgaagattatgccaaaaactgaccgttggtttgttggttagtcctaacatctaagtttgaccagttgagcggtggccacagctagtttgaatgctaccaatgttcattacatcaaagcagatgatctgatcggagattggaaggagtttctccttctaaatcatatcatatcatttgagatactgcatactatatgttggttcttgtgcagattaaagcttctggattttacacaatcctcctaccgtttaccagtcaaacctttaacatgttgctgtgctctttttgtgaaatttcaacttagtaataatattttgtgacatgcactcaaactacatactccctccatcccaaaaaaatccaacctaggataggacaacaaatctggacaaacactttgtccagatttgctgtgacctatcctaggttgttcttttttgggacggatggagtacttctgaagcgttcgtccttatagttctgtttcattgtttcaggttgcaagccatgaaacttttggtactttgggtgcaattgtgaaacggcgcactggcaacaagcaggttggtttcctcactaaccatcatgtcgcggttgacttggactaccctaatcagaagatgtttcatccattaccacccaatcttgggcctggcgtttatcttggagctgttgaaagagcaacttctttcatcacagatgacgtttggtatggaatctatgctggaacaaacccaggtagagcagttacaaattagctggtcagggctttatctacaattgtttgtctatttaaaaacaatgtcttaagtaacattaaaagacacttcaactcactgtataaatataaaaaataagtttcctgcttcctagttcccatcattcatattaatgccggattgcattttttactagttagaaacaaatcaacatttagttttgattgtaaaaaaaacatactatgtttgtgcttttctggtcatttaacacatttaccattttattgattattccaaatgatgtatataccagtctaattcccaaacatatatgccgccccattatggatttgcagagacatttgtacgagctgacggtgcatttatcccatttgctgatgactttgacatttccaccgtcacgactgtagttaggggagtcggtgacattggggatgtcaaggttatagatctgcagtgtccgctcaatagcctcatagggaggcaagtatgcaaagttggcagaagctctggtcacacaactgggactgtgatggcctatgcccttgagtacaatgacgagaaaggaatatgcttcttcacagacatccttgttgttggtgagaaccgccaaacatttgatttggaaggtgatagcggaagccttattatcctgactagccaagatggtgagaagccgcgtccaattggaattatatggggtggcacagcaaatcgtgggaggttgaagcttacaagtgatcatggccctgaaaactggactagtggggttgatcttggccgtctactcgaccgtctggaacttgatattatcattaccaatgaatcactccaaggttgattcttttccctctattcatttgcattcatcttcagatattccagaaatacgttggactatccaatttacttgatgttttcatactactttgtattgaatctgtacacttttgctccattacaaagctgacagaatttgcctactataaagatgccgtgcagcagcaaagatttgctttggtggccgccgttacctcagctgttggggagtcttccggggtgcctgtcgccatcccggaagagaagatcgaagagatcttcgagccattggggatccaaatccagcaactgcctcgccatgacgtggcggcctctggaactgaaggggaggaggcatccaacacggtggtcaatgtggaagagcaccagttcatctcaaacttcgtcggtatgtcgcccgtgcgcgacgaccaagacgctccgaggagcatcaccaacctgaacaacccctccgaggaagaactcgccatgtcgctccatctgggtgaccgagagcccaagcggctccgttcggactccggatcaagccttgacctggagaaatgaagtgcaaaaagtgctggttctgaatttctgattctggttcttcagagtttattgtcattgtggacagccaaaagtagtagtagatcaaaagacctcatatgcagttcagaaaaattgaacctgcagtaagcttcggtgagcttgaatggctttggcaagcatatcatgtaacatgatgtattattattactacaattgattcagccccttgtaggatgttaggtgctagtcctgcagttttgctgtgctcatgatcgtgagacctgatatacaccattgccggatcccttcctctttgtagaagaagaagaacaatgtgcagggaattatgataatgatgatctttgatctatttccccctattattatttaccaattatcaggtttcaattatc</dnaseqindica> |
| External Link(s) |
