Difference between revisions of "Os01g0922800"
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==Annotated Information== | ==Annotated Information== | ||
[[File:tonglu.png|right|thumb|''Flowering time control photoperiodic pathway of rice(from reference <ref name="ref1" />).'']] | [[File:tonglu.png|right|thumb|''Flowering time control photoperiodic pathway of rice(from reference <ref name="ref1" />).'']] | ||
| − | OsMADS51, also konwn as OsMADF65, is type I MADS-box gene in short-day promotion pathway in rice. OsMADS51 encode a protein which is composed 164 amino acids and contains an SRF-like MADS domain..<ref name="ref1"> And the K-box region of OsMADS51 protein is not conserved and C-terminal region is short..<ref name="ref1"> It function as an SD(short-day)-dependent flowering activator. Under the short-day condition, OsMADS51 mutants flower about 2 weeks later compared with individuals which overexpress OsMADS51 flower 1 to 2 weeks early. And under long days, OsMADS51 mutants flower 3 to 4 days later, meanwhile the overexpressors flower no more than 1 to 2 days early. In OsMADS51 mutants，Ehd1 is down-regulated..<ref name="ref1"> That means that OsMADS51 acts upstream of Ehd1. Under short days, OsMADS51 transmit a flowering signal through Ehd1, and Ehd1 then turn on OsMADS14 and Hd3a..<ref name="ref1"> .<ref name="ref2">.<ref name="ref3">So does the long days condition. The amount of these activators under long days is quite low. In the plants which OsGI is suppressed, not only the level of Hd3a, but also OsMADS51 and Ehd1 are down-regulated. This indicates OsMADS51 is in the downstream of OsGI. | + | OsMADS51, also konwn as OsMADF65, is type I MADS-box gene in short-day promotion pathway in rice. OsMADS51 encode a protein which is composed 164 amino acids and contains an SRF-like MADS domain..<ref name="ref1" /> And the K-box region of OsMADS51 protein is not conserved and C-terminal region is short..<ref name="ref1" /> It function as an SD(short-day)-dependent flowering activator. Under the short-day condition, OsMADS51 mutants flower about 2 weeks later compared with individuals which overexpress OsMADS51 flower 1 to 2 weeks early. And under long days, OsMADS51 mutants flower 3 to 4 days later, meanwhile the overexpressors flower no more than 1 to 2 days early. In OsMADS51 mutants，Ehd1 is down-regulated..<ref name="ref1" /> That means that OsMADS51 acts upstream of Ehd1. Under short days, OsMADS51 transmit a flowering signal through Ehd1, and Ehd1 then turn on OsMADS14 and Hd3a..<ref name="ref1" /> .<ref name="ref2" />.<ref name="ref3" />So does the long days condition. The amount of these activators under long days is quite low. In the plants which OsGI is suppressed, not only the level of Hd3a, but also OsMADS51 and Ehd1 are down-regulated. This indicates OsMADS51 is in the downstream of OsGI. |
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===Expression=== | ===Expression=== | ||
| − | Expression is ubiquitous in all organs..<ref name="ref1"> | + | Expression is ubiquitous in all organs..<ref name="ref1" /> |
===Evolution=== | ===Evolution=== | ||
| − | OsMADS51 is a unique gene in rice genome; there is no homologous gene existing in Arabidopsis. But a homologous gene with 74% identity exists in wheat and maize..<ref name="ref1"> | + | OsMADS51 is a unique gene in rice genome; there is no homologous gene existing in Arabidopsis. But a homologous gene with 74% identity exists in wheat and maize..<ref name="ref1" /> |
===Mutants=== | ===Mutants=== | ||
| − | There is two independent T-DNA insertional mutant alleles, osmads51-1 and osmads51-2. in which T-DNA are inserted into the first intron in both alleles, at 9606 and 15927 bp from the start codon in osmads51-1 and osmads51-2.<ref name="ref1"> | + | There is two independent T-DNA insertional mutant alleles, osmads51-1 and osmads51-2. in which T-DNA are inserted into the first intron in both alleles, at 9606 and 15927 bp from the start codon in osmads51-1 and osmads51-2.<ref name="ref1" /> |
===Knowledge Extension=== | ===Knowledge Extension=== | ||
In rice, there is two short-day promotion pathways: one mediated by Hd1 and the other by Ehd1. Both these two pathway can induce Hd3a, transport Hd3a product protein to the shoot apical meristem to induce flowering. | In rice, there is two short-day promotion pathways: one mediated by Hd1 and the other by Ehd1. Both these two pathway can induce Hd3a, transport Hd3a product protein to the shoot apical meristem to induce flowering. | ||
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<ref name="ref1">Kim S L, Lee S, Kim H J, et al. OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a[J]. Plant physiology, 2007, 145(4): 1484-1494.</ref> | <ref name="ref1">Kim S L, Lee S, Kim H J, et al. OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a[J]. Plant physiology, 2007, 145(4): 1484-1494.</ref> | ||
<ref name="ref2">Takahashi Y, Teshima K M, Yokoi S, et al. Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice[J]. Proceedings of the National Academy of Sciences, 2009, 106(11): 4555-4560.</ref> | <ref name="ref2">Takahashi Y, Teshima K M, Yokoi S, et al. Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice[J]. Proceedings of the National Academy of Sciences, 2009, 106(11): 4555-4560.</ref> | ||
| − | <ref name="ref3">Lee S Y, Jang S H, Jun S H, et al. Functional analysis of MADS-box genes expressed preferentially in vegetative tissues[C] | + | <ref name="ref3">Lee S Y, Jang S H, Jun S H, et al. Functional analysis of MADS-box genes expressed preferentially in vegetative tissues[C]Advances in rice genetics, Los Baños, Laguna, Philippines, 22-27 October 2000. World Scientific Publishing Co. Pte. Ltd, 2003: 414-416.</ref> |
<references/> | <references/> | ||
Revision as of 13:44, 21 May 2014
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Contents
Annotated Information
OsMADS51, also konwn as OsMADF65, is type I MADS-box gene in short-day promotion pathway in rice. OsMADS51 encode a protein which is composed 164 amino acids and contains an SRF-like MADS domain..[1] And the K-box region of OsMADS51 protein is not conserved and C-terminal region is short..[1] It function as an SD(short-day)-dependent flowering activator. Under the short-day condition, OsMADS51 mutants flower about 2 weeks later compared with individuals which overexpress OsMADS51 flower 1 to 2 weeks early. And under long days, OsMADS51 mutants flower 3 to 4 days later, meanwhile the overexpressors flower no more than 1 to 2 days early. In OsMADS51 mutants，Ehd1 is down-regulated..[1] That means that OsMADS51 acts upstream of Ehd1. Under short days, OsMADS51 transmit a flowering signal through Ehd1, and Ehd1 then turn on OsMADS14 and Hd3a..[1] .[2].[3]So does the long days condition. The amount of these activators under long days is quite low. In the plants which OsGI is suppressed, not only the level of Hd3a, but also OsMADS51 and Ehd1 are down-regulated. This indicates OsMADS51 is in the downstream of OsGI.
Expression
Expression is ubiquitous in all organs..[1]
Evolution
OsMADS51 is a unique gene in rice genome; there is no homologous gene existing in Arabidopsis. But a homologous gene with 74% identity exists in wheat and maize..[1]
Mutants
There is two independent T-DNA insertional mutant alleles, osmads51-1 and osmads51-2. in which T-DNA are inserted into the first intron in both alleles, at 9606 and 15927 bp from the start codon in osmads51-1 and osmads51-2.[1]
Knowledge Extension
In rice, there is two short-day promotion pathways: one mediated by Hd1 and the other by Ehd1. Both these two pathway can induce Hd3a, transport Hd3a product protein to the shoot apical meristem to induce flowering.
Labs working on this gene
Division of Molecular and Life sciences and Biotechnology REsearch Center, Pohang University of Science and Technology, Pohang 7910-784, Republic of Korea
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 Kim S L, Lee S, Kim H J, et al. OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a[J]. Plant physiology, 2007, 145(4): 1484-1494.
- ↑ 2.0 2.1 Takahashi Y, Teshima K M, Yokoi S, et al. Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice[J]. Proceedings of the National Academy of Sciences, 2009, 106(11): 4555-4560.
- ↑ 3.0 3.1 Lee S Y, Jang S H, Jun S H, et al. Functional analysis of MADS-box genes expressed preferentially in vegetative tissues[C]Advances in rice genetics, Los Baños, Laguna, Philippines, 22-27 October 2000. World Scientific Publishing Co. Pte. Ltd, 2003: 414-416.
Structured Information
| Gene Name |
Os01g0922800 |
|---|---|
| Description |
Similar to MADS-box protein PTM5 |
| Version |
NM_001051770.1 GI:115441910 GeneID:4327247 |
| Length |
19989 bp |
| Definition |
Oryza sativa Japonica Group Os01g0922800, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 1:42139221..42159209 |
| Sequence Coding Region |
42139357..42139541,42157107..42157188,42157601..42157647,42157735..42157831,42158706..42158789 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008394:42139221..42159209 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008394:42139221..42159209 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggcgcggagggggagagtgcagctgaggcggatcgaggacaaggcgagccggcaggtgcggttctccaagaggagggcggggctgttcaagaaggcgttcgagctcgccctgctctgcgacgtggaggtggcgctcctcgtcttctcccccgtcggcaagctctacgagtactcctcctccagcattgaaggtacctatgatcgctatcagcaattcgctggagccaggagagacctgaacgaaggaagtacaagcatcaacagtgatgaaaatgcaagtatacactccaggcttagggacataacggcctggtctctccaaaacaatgctgacgagtcggatgctaatcagctagagaaactggagaaactgctgacaaatgctttgagggatacgaaatcaaagaagatgttggcaaaacaaaatggtgaagggagtaggagcagagcaaactccagtggctctagggggcaggaggaaggaagtgcatga</cdnaseq> |
| Protein Sequence |
<aaseq>MARRGRVQLRRIEDKASRQVRFSKRRAGLFKKAFELALLCDVEV ALLVFSPVGKLYEYSSSSIEGTYDRYQQFAGARRDLNEGSTSINSDENASIHSRLRDI TAWSLQNNADESDANQLEKLEKLLTNALRDTKSKKMLAKQNGEGSRSRANSSGSRGQE EGSA</aaseq> |
| Gene Sequence |
<dnaseqindica>137..321#17887..17968#18381..18427#18515..18611#19486..19569#cgatcccctcctcctcctcccccacttctccccaccaccacaccaccacacacacgcacgcacgcacgcacgcctccgttttcccccaccgacgagaggcggagagggaggggagctagggtttttcggggcggggatggcgcggagggggagagtgcagctgaggcggatcgaggacaaggcgagccggcaggtgcggttctccaagaggagggcggggctgttcaagaaggcgttcgagctcgccctgctctgcgacgtggaggtggcgctcctcgtcttctcccccgtcggcaagctctacgagtactcctcctccaggttcgctctctgattccatccccctccctccccccgcctcctcctgttgttagtttgttagttacgatcaaaacccagccgcggccgaatcgagaccccccgccgcggcaggatctgccgattggttccgatcccatttcgttctgctatcccggatcgatcgatgattctccctgctatactgtatcgtaatgggtaagcctagtgcacgccatgtgctcgagactatctcgcagaggcccccccccacccccccaaccccccaccgccacctaccggcgttgcgctgcatgacagccctgtgatttctgattagtaggatcttgttctcttagcctgtacagtagcagcagccagcagcttgtatctagtatatgaagctttgacaccttgtactgttccgcgcttcgtctccccgacggcgtgggccgcgttgtttttcctcccctggtgtgcttttacacgtgtttcgcatgaggagacaccagccttcgtagaggcggaggcgcgcagcaatacgcgcatcaccctgagagccaccgcagtgtacggcctacggcgagtgaggagtttatcattttctcccaacttttttttcggcatcttgttttttttttctctgagagggagtgatgaaggagtacagttgtgtgtgttttctttaatttatttcagcgacagggacgaagtcggcttgctctgtagcgaccggcctattctcataaatagtcttttgttatggtattgagtggcatatgttaaataatattatttgatacaactgcttaaagatttttttgtaatggcttatttcttgtattttagtgtacacatcgaacaggactattcttagtgatatagtagtgggataacatatttatctaattaacctttattaatgatatactataaagaacattgataatatatttatatatgtcaagcaacttgattgaaaaacaagcacatcactcacaaagttagcccaattgtgcacaatagtccatttcataccatgatgctaaaaatcgcgcgctctgattgtttgagcgacaacccagaataattcataggtataatattttatatatatattaagtggtttaaaaaccaagattgaaaaatagacctcaataaaaaaaatgccccctaaaatcaactctcaaggagaaccgcgtttggctttggccgataatccacgaacaaatgatgaaatcacatattccatatattcgcattcacttatgaacaaatggcaacttttcttatttcttggtaatgtacgccctacacattttccaacccacatttttctagttttgcaccccctccaccaccaatatggtacaactacagctccaaaatttagctccaggagttaggtctggagtggagttgcctaaatccagttccacaactctagtttattttgtgcgagcttcacccagcttcactcccaattttaatggagctgtaattgtttggctgagctccagctccaagagaagtggagctagagctggagctgtgccaaacaggcccttagcttgtccaaatggtctagattcttatttcagattctacgagtcagaaggtgcataatcaataatcaatgaactggaagccagaagttggataacgtaagcttcagctagatactcaccaattgctttttaggatctgtagctttcttaaatagggcatttcctatctttaatactccatatgtcccaaaatataacgacttttagcctttagaatttgttccaaaatattacaacttctccaccaacattctcttctcaaccaatcacaaccctccaccattcaatttctccacctacattcatttctcaaccaatcacaatcttccaccatttaattctacttattttcttaataaccgtgaccaactctaaaactcattatatcctgtccgtcccaaaataagtttatttttcacgcatctcacgcgtaccaatatctaagaaaaaaaactagaatacattcacttcatcaaattccaatgcagttgttcctcactttatctactcctaatgtattttccccctacttttacaaactctgttgcaataattgctaaaatatgaacttattttgggataaatgggaggggctaaaaatgatcttattctgggacggatggagtagatgcttcttgtagcatatgtttttgaatttaactaccatcaagttccaccacaacatatagaagtatcttgtagtaaccgttattttgctattttgctaatgaaatagactagaggcattttagcttgccttgcacacgagtgacaagtaaactagaacggaaggagaattttattccccctcaatctgaccaaatcgatccaaagccataccagtgtatgattttccttactaaatgtgaggttgatctttcactaacaatgaataaactcctctaaattttgaactaggatgggacaatagacccaaattaacataaaactaggaaatcaatgcggcgatgtttaagtaatgaccatgattgtagacaacaaaataacacaaaattgataaaataactcgtacatgtatgtcatagattatttaatatttgttgggtcgtccccttcatgtgttaaatcatctaggaatttgtcctaacatttgggataaaaaatttcgctaataaatctattgaacatctaatgtacgacaaaagtctctatgacaacccactattagaaattggggcatatagatctccagcaaaccttaacattttattcaagggtttgtccttgaatacatccaggcaaaatgttgaggatttcaatcaaagttcgggccattggatttatttgacgcgtatcttaatggttaacatgtgccctacctcttcttaccttttcttgttatctcactattgaagttgtccatggttactaatactcaaagcctagaggctatacacgcactacctcctgctattccatatcacattctaaccacaatgtctacggttattacttattagctatgtttgcaatgcttcgggcttgcattcaactaagatagcaaaaaaaagtgttaaagtgttaaaaaatccccacaattcccggcacacgagggggtgggggttaaaaatccccttgaatataatttgactaggtatctcttctttgttggcttagaagatttagttgtgtttagtacttcatgaagttatggctatcactacaacttggtcaagtttgatttcttatctagtttgttgccatactaattaaagtgttgcattttgaaatgcacccaaagaagtgaattatgcacacatactagaatcattaacaatcgtttttaaacttgttttatgaatactaatatgtattttatacgcacgtaagacacacataatatgctgaccatatatgtgataaattatgaatgatcttatatcttttatactcccttcgtttaaaactagagggtgtattatgattttacacaatctccaactttgaacattaatttcttttgctataaattatcaactacaaaaacaatatcatatgagagtattttttaaatttgaatctaatgatactacatgtgtagcattaacaacatatttttgtttaattatcagtcaaaattttaaaatggtgattttacagaaaacaacgatgtcatatatatattagagcggatggagtatgttacaaacaaactaactagcatcattactacaaagcttgtccaaggttgaacaaaatcatctcaaaagctctaaccatcatatcattccctcaaaaggcacaaatcattccttgctagactgcttcctatgagtaaattacatcgagcagtaatgtttatcagttatctctatgcacaacctaataatacatcatgcgagtccacaacctttttgcctcctgccaatctatagtattacataattattagaacatagcatatgccattgtttttaaaattcttcctaaatattttaacaaatcaattctaaatatgttagaacatctattataatgtttcaacaatgcacatagtttcatctggtttccttatgcctctccgtagtcggatcattgatttgtcttacgacattaacaatgtgaagtgcaaaggtgctcccagggagaaaacaagtccacataatctagcgtttatgaaagagatgtttatctagttagtaaccaataattctgatattggttttcccatgggtgtgatggatattcattgcaacttacaggcaaataatattgtgcattttcttatttcgaaaagatatcgtacggatgaaagtacatgcatacacttttacacaatattatacaaaattaggtttgcttttcttatcttcagtcttataatataaacatgcaagcatatacaaaatattatctcaaaaatttataatcaacttatgtcaaacatgcaagcaaggatgttgacaagctttaaagtttctttttaaaaaggtcacacttatctgaaatgatcccaattatctcattagtttggatactatattactcctaaggcatgccaaatttataattaacctgacgggttaattttttacatta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gtttgtttcaacctattggtatgaatctgtttgattctgtaggaactgtggtttgctgtttgcc</dnaseqindica> 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