Difference between revisions of "Os01g0201700"
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==Annotated Information== | ==Annotated Information== | ||
===Function=== | ===Function=== | ||
| − | '''OsMADS3'''(Os01g0201700)plays key roles in both stamen identity specification and late anther development ,and Loss-of-function mutants of | + | '''OsMADS3'''(Os01g0201700)plays key roles in both stamen identity specification and late anther development ,and Loss-of-function mutants of '''OsMADS3''' result severe defects in stamen identity and lodicule number<ref name="ref1" /><ref name="ref2" />.'''OsMADS3''' is highly expressed in the tapetum and microspores during late anther development and is a key transcriptional regulator that functions in rice male reproductive development, at least in part, by modulating ROS levels through MT-1-4b<ref name="ref1" />. |
'''OsMADS3''' plays a synergistic role with '''OsMADS13''' in both ovule development and floral meristem termination<ref name="ref3" />.'''OsMADS3''' represses the expression of the putative A-class gene DEP ('''OsMADS15''')<ref name="ref3" />.'''OsMADS3''' and '''OsMADS58''' have been subfunctionalized such that they play more predominant roles in distinct whorls<ref name="ref2" />.The expression of '''OsMADS3''' and '''OsMADS58'''can be activated by '''OsMADS6''' to regulates the stamen, carpel, and meristem identities at early stages and specifies carpel/ovule development[<ref name="ref4" />. | '''OsMADS3''' plays a synergistic role with '''OsMADS13''' in both ovule development and floral meristem termination<ref name="ref3" />.'''OsMADS3''' represses the expression of the putative A-class gene DEP ('''OsMADS15''')<ref name="ref3" />.'''OsMADS3''' and '''OsMADS58''' have been subfunctionalized such that they play more predominant roles in distinct whorls<ref name="ref2" />.The expression of '''OsMADS3''' and '''OsMADS58'''can be activated by '''OsMADS6''' to regulates the stamen, carpel, and meristem identities at early stages and specifies carpel/ovule development[<ref name="ref4" />. | ||
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===Expression=== | ===Expression=== | ||
| − | the expression of | + | the expression of '''OsMADS3'''is detectable in stamen primordia<ref name="ref2" />, when the lemma and palea primordia initiate, but disappears soon after the appearance of the stamen primordia. However, mads3-4 seems to show strong defects in late anther development (Figures 1C to 1F). RT-PCR detected no obvious expression of '''OsMADS3''' in vegetative organs, nonreproductive floral organs (i.e., glumes, lemma, and palea) (Figure 5A). By contrast, an increase in '''OsMADS3''' expression was detected in anthers starting from stage 9, when young microspores form. The expression of '''OsMADS3''' peaked at stage 11, when the bicellular pollen forms, and decreased at stage 12 (Figure 5A). In addition, the '''OsMADS3'''transcript was weakly detected in the pistil at the heading stage (Figure 5A). Consistent with the RT-PCR data, transgenic rice plants expressing the GUS gene driven by the '''OsMADS3''' promoter (3.1 kb) exhibited GUS activity from stage 9 to 12 during anther development (Figure 5B). GUS activity was also observed in the stigma of the pistil (Figure 5C). Furthermore, transverse anther sections showed GUS expression<ref name="ref1" />. |
===Evolution=== | ===Evolution=== | ||
Revision as of 14:35, 22 May 2014
The rice OsMADS3(Os01g0201700) is a member of MADS-box transcription factors in rice, it belongs to class C genes of the ABC model of flower development in plants[1][2].
Contents
Annotated Information
Function
OsMADS3(Os01g0201700)plays key roles in both stamen identity specification and late anther development ,and Loss-of-function mutants of OsMADS3 result severe defects in stamen identity and lodicule number[1][2].OsMADS3 is highly expressed in the tapetum and microspores during late anther development and is a key transcriptional regulator that functions in rice male reproductive development, at least in part, by modulating ROS levels through MT-1-4b[1].
OsMADS3 plays a synergistic role with OsMADS13 in both ovule development and floral meristem termination[3].OsMADS3 represses the expression of the putative A-class gene DEP (OsMADS15)[3].OsMADS3 and OsMADS58 have been subfunctionalized such that they play more predominant roles in distinct whorls[2].The expression of OsMADS3 and OsMADS58can be activated by OsMADS6 to regulates the stamen, carpel, and meristem identities at early stages and specifies carpel/ovule development[[4].
Mutation
OsMADS3 alleles:mads3-1,mads3-2,mads3-3,mads3-4. mads3-1 is a weak allele carrying an insertion in the C-terminal region of the gene and showing no defective floral organs, whereas mads3-2 is an intermediate allele with a mutation at the C terminus of the K-domain and reduced expression of the gene, which resulted in mild transformation of stamens into lodicules[2]. mads3-3 is a strong allele in the Dongjin (a japonica cultivar) background. It contains a T-DNA insertion in the second intron of the gene, which leads to no detectable MADS3 transcript and homeotic transformation of nearly all stamens in whorl 3 into lodicule-like organs [2]. mads3-4, which results in a mutation in the middle region of the K-domain of OsMADS3, seems to be another intermediate mutant with reduced expression of OsMADS3[1].
Expression
the expression of OsMADS3is detectable in stamen primordia[2], when the lemma and palea primordia initiate, but disappears soon after the appearance of the stamen primordia. However, mads3-4 seems to show strong defects in late anther development (Figures 1C to 1F). RT-PCR detected no obvious expression of OsMADS3 in vegetative organs, nonreproductive floral organs (i.e., glumes, lemma, and palea) (Figure 5A). By contrast, an increase in OsMADS3 expression was detected in anthers starting from stage 9, when young microspores form. The expression of OsMADS3 peaked at stage 11, when the bicellular pollen forms, and decreased at stage 12 (Figure 5A). In addition, the OsMADS3transcript was weakly detected in the pistil at the heading stage (Figure 5A). Consistent with the RT-PCR data, transgenic rice plants expressing the GUS gene driven by the OsMADS3 promoter (3.1 kb) exhibited GUS activity from stage 9 to 12 during anther development (Figure 5B). GUS activity was also observed in the stigma of the pistil (Figure 5C). Furthermore, transverse anther sections showed GUS expression[1].
Evolution
OsMADS3 is most closely related to OsMADS58 among the rice MADS box genes. OsMADS3 and OsMADS58 share 96 and 67% sequence identity in the MADS domain and across the whole protein, respectively.OSMADS3 and OSMADS58 share similar genomic organization: they contain 10 exons and 9 introns at the same positions and have a large intron after the second exon, which partly contains the MADS box[[2].
Labs working on this gene
- School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
- Bio-X Research Center, Key Laboratory of Genetics and Development and Neuropsychiatric Diseases, Ministry of Education,Shanghai Jiao Tong University, Shanghai 200240, China
- Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, Michigan 48824
- Graduate School of Agricultural and Life Sciences, University of Tokyo, Bunkyo-ku, Tokyo 113-8657, Japan
- Division of Molecular and Life Sciences, Pohang University of Science and Technology, Pohang 790-784, Republic of Korea
- National Institute of Agrobiological Sciences, Kannondai, Tsukuba 305-0856, Japan
- Graduate School of Science, University of Tokyo, Hongo, Tokyo 113-0033, Japan
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Hu L, Liang W, Yin C, et al. Rice MADS3 regulates ROS homeostasis during late anther development[J]. The Plant Cell Online, 2011, 23(2): 515-533.
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 Yamaguchi T, Lee D Y, Miyao A, et al. Functional diversification of the two C-class MADS box genes OSMADS3 and OSMADS58 in Oryza sativa[J]. The Plant Cell Online, 2006, 18(1): 15-28.
- ↑ 3.0 3.1 Li, H.F., Liang, W.Q., Yin, C.S., Zhu, L., and Zhang, D.B. (2011).Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy.Plant Physiol. 156: 263–274.
- ↑ Moon, Y.H., Kang, H.G., Jung, J.Y., Jeon, J.S., Sung, S.K., and An, G. (1999). Determination of the motif responsible for interaction between the rice APETALA1/AGAMOUS-LIKE9 family proteins using a yeast two-hybrid system. Plant Physiol. 120: 1193–1204
Structured Information
| Gene Name |
Os01g0201700 |
|---|---|
| Description |
Similar to MADS box protein |
| Version |
NM_001185293.1 GI:297719720 GeneID:9271572 |
| Length |
9393 bp |
| Definition |
Oryza sativa Japonica Group Os01g0201700, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 1:5558512..5567904 |
| Sequence Coding Region |
5560361..5560379,5560446..5560507,5561618..5561699,5567047..5567333,5567665..5567679 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008394:5558512..5567904 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008394:5558512..5567904 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgatgaacatgatgaccgatctgagctgcgggccatcgtcgatgacggagctgaccgcggcagcggcgccggctgggtcaggatcgtcggcggcggtggcggcggggagcagcgagaagatggggagggggaagatcgagataaagcggatcgagaacacgacgaaccggcaggtgaccttctgcaagcgccgcaatggcctcctgaagaaggcgtacgagctgtccgtcctctgcgacgccgaggttgccctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaacagtgtgaaatccaccgttgagaggtacaagaaggcaaacagtgacacctccaactctggcacagttgcagaagtcaatgcccagcactaccagcaggagtcctccaaactgcgccaacaaatcagtagcttacagaacgcaaacagtctaactcggcttgcctaa</cdnaseq> |
| Protein Sequence |
<aaseq>MMNMMTDLSCGPSSMTELTAAAAPAGSGSSAAVAAGSSEKMGRG KIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV KSTVERYKKANSDTSNSGTVAEVNAQHYQQESSKLRQQISSLQNANSLTRLA</aaseq> |
| Gene Sequence |
<dnaseqindica>7526..7544#7398..7459#6206..6287#572..858#226..240#atcagattggaattggccacaaaagctactgctaactacattcacctcacatttcttcttcccctttccctcctcctcctcttcttcctcttcttctcccccacctctctctttaatacctctcctcctcctgttgctgcttctgcctctctcacatcttctttctttccttctctggatctcttccatcttcagaagagagagcactagttagcatacccatccatgatgaacatgatggtaaattctggctttcttgcttttggataaattttgcttcctttcttaacttgagcacaagcttgtgttatatgtggtgtggaatcttggttgccatgttgtgaggatttagctagagagtcaagaaagaggaatatatgctttatgtagataggagtaggatctctgggtctttaaacatcaccatgacaagcaaagataagaacaggagagcagttcttgattattatttttcttctcatcaagaaattaagccggagatagacatggcagctgcacgcagtgattcacttcttgatttcttgatttgggttgttgcgtttgtgtccagaccgatctgagctgcgggccatcgtcgatgacggagctgaccgcggcagcggcgccggctgggtcaggatcgtcggcggcggtggcggcggggagcagcgagaagatggggagggggaagatcgagataaagcggatcgagaacacgacgaaccggcaggtgaccttctgcaagcgccgcaatggcctcctgaagaaggcgtacgagctgtccgtcctctgcgacgccgaggttgccctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaacaggtgattcacaaaatactatctcatctcatcctacttatgcttatataatccataaaattaaccaagaggtctaaaaaggctatggaaatatgcatacacaatagaagctacacatatgtttcttttttttaaaaaaaaagaagaaaatgtttgttggttgagttcatggttgtccaaattggagcaagtatggagatagctttcatgggggcaaagagaggggagggtcaaatgggagatgcatcttttgttacttctgttattaactgtctcgtgttatttggtgtttctggggggaaagaaagaaaatcgcaacagtttctctcttgcttgcttgtgtgtgtgtgctagctagcttcttttgctgctttcctttgtgcttctggtgaggtgagctagatgtttgagatagatctaggacagtgcttgctgtgtgtagtatgctgctgcttcctttctttctctctctctctctctctctctcttgtgtgtgtgagatgagagagagagagagatgttcttctttggcttggtggtcctgctcttttcttgctgtatttatgttttttcctttctctctccactgtggcaagctgtgtgcttgtatgtctgtgtggcagagctagctgtagagatagatgaagagagagagagaggtgagctttaagatctctctcacacctcatgatgtgtatgatcacacacatatttgcacaaaaaatatagagcatcctggggctccattcatcatctttcccttttgtgtagctttgcttgtgtagaagcagatctctagatagcaaggagagtgtgtatggttggccatggcattgatgtactagtagttagtttgtacatgaatgtgccaagtgttagtgtatgtatgtttgatcaggtaataagggtagagggataaacaagcagctgatgatataacactctctctctctcttgtgttccagtttcttttgcatcatctcctgtttccaaccaatgagctgctagggttagggcttcatccccatgtgcatctctctctctctctctcatgagtgtgtgtggctgtgtggtgcaaattttagtcccgagcaacttcacgagggcaggtgatgcctgacagcaccactgtacttttgaacaggaaccaaacacaaagaagggatccaacaaagaaacagcagtaaagatgaaaaaaatacagtaaagtatataggggagtacatatgcatgcgtttgatttactgaaagaatttacacaaagatgattgttccatattttttgcatgtctccctttcctcataagctatacatactgaataatgtgattatataaaaatattagctagtctttttttacaaatgattttgttatgactattagttctagttatgtgtcgtatgcatgtaaataaaaaagtggcaggataagcttatttgttttttcatcaaataaagaaaactaaaatttgtgtaccaaaatatcagtttcaatgttatgtgaaaacatgtcatgcaggcataaaaaaaattacacacatggccactgttgtctagttatgttgaagaaaaaactgaaaaactgtggtctgcatgaagtatttgaaatcaattaataaaacatattgactttttcttttttgcttcgcgactaatcaatcctccttgaaaaacgaaattagaagcacatatatacgttttgttgcactgcttaaacatggggatcagaaacctctcatgtatcctcaccaaaaaaaaaaaaagagaaagaaaaagaagcctctcttgtacggatgacacgtgtccatgcagccactgtcgcagtagaaatggcgtccaatggcgtggcagcaatggtacaactactgggcctgcatttgtattgggagactacaagaggagtgaagaaaagctggtggctttggtcagaatgggaatgggtaaaagcctacagttgtgtagtgtagtctctgtgtgtgcgttgctgccttgttgccctcgtttgtccattgggttaaaaccagtctcactgttgctgcccaatcatgtgaaatcctgtgcccagcttcacattgggcagccaaatagcgttctcgagaatcctaaggtttcatttctttcttgccaggaagatagtaggattgatgtctgtacttcagtactaccattactccaatttctttggtcctcgaacaatatgtttactggtacattaccactgtaatgtgacatcttttttgcatttttttagataatggacatcttttttgctacccaaaatataagaaattctaaggaatgacagaaagtaggtgaaataaaataggaaataattgtggtaggttgatattgaggagcaggtgaaaaaagtttttatatttaggatggagggattaagtaatttcttgcctgaaaatcttcatttgggttggaggggattgatagtgctcgctgcttgatatgattgtttgttagttattttatgcagcaattgcacgctttatgtttggacaaaggaaaatttcaaaggttgtagtgaaaagacatgagctagctagcagtcacttcacagtagcatgcatgaacagaagatctttgaagaatatttttggagaaccttttggggatatctttggtatacagtgatctctagctaggttttttttagggtagtactccgtatactatttccacatatttgtcggtccttggaaattaaaatgatttattctcatggatttatcatcataagcagtttctgctcaagtattgtcagcagtttgtgttattgacttgtttggtagttttttttttttttgaagaacttatttgctagttggctgactaggtagcaagtacaccattttggaaggtggccttccacaattttctgtctaaatatgcttaattatatggacataacaatatctcctttgtgacaataaaaactgtggaactacgtagttccacgtatacgttacgtggttacattagtaagtacaaccttgtaaaacattagcatgtcatatgcattgatctgcctaagaaacgagaataaaatctctgcgatgagaagtactgttggagagtttatagattgcttaaggtaataggatattttttgttttcttgttatatactattcatcgtaagctctgctcctattgccgcatgccctgttttcttcaagctattcaagctagatatgatgctttgcttgataactatgcaagaaaaaacaagatttataaggtcaaaataagtttgcttcctacatgcttgggtttttcatatgttaaggttgaaaatcataattaacaaacacaccaaaactaaaatagaatacataatgtgatcgtgaggtgaacacgggataagtgttgtttgggctgtcaaacgtacgttctatacaactgaactccaaatatatattatcatccataccatcatttttgagttttcttatttttcaaaaaagagaaaatactagtgtatccccagtccatagtatatctaagccttgatttttttaccttttatttatagtattattagagttcacttaagaacttagctctggtactactcatttttttatactaaatttatgaatgcactttgtaagtcatcacatatttgtacatctaattgtttagcaatgtgcacaaaattaactatttgttatctagttaaggtgtatattaatatgattccgtgatttcgttaacttgtactgaaaacggagtagcatgttagggccactattctatagctttatctgttaattcgaacctgcaatttcagaagtgtctttatatcggtttcaaagagtgataaagcgcacatacactgatccttagtccattatatgtagtcttgtatgctctttttcggatgaaaatagttttatacgcttggtgccattattctcttgacatagtgtctcaaaattttgtaacttaatgctgatctttagttcattatatgtagtcttatatgctctttttcggatgaaaatagttttatacgcttgctaccattattctctcttgacgtagtctctcaaaattccgaacttc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|
| External Link(s) |
