Difference between revisions of "Os06g0100266"
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===Expression=== | ===Expression=== | ||
| − | + | According to the research, the BLS resistance in DP3 was controlled by recessive gene(s). To further confirm the inheritance pattern of BLS resistance, BC2F2 (9311/DP3//9311) populations were evaluated by JZ-8 strain inoculation. The damage severity scores of 307 individuals in BC2F2 population ranged from 0 to 9, and showed a pattern of bimodal distribution (Fig. 2). The segregation of resistant and susceptible plants well fitted in 1:3 ratio , suggested that a recessive gene, tentatively designated as bls1, conferred BLS resistance in DP3 <ref name="ref1" />. | |
===Evolution=== | ===Evolution=== | ||
Revision as of 05:56, 24 May 2014
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Contents
Annotated Information
The rice bacterial leaf streak (BLS)which has seriously constrained the rice production in humid tropical and subtropical areas of Asia and Africa.When rice is infected by the BLS pathogen, leaves become yellow or even blasted, the rate of unfilled grains will increase, and the grain weight will decrease. In recent years, some QTLs for BLS resistance have been mapped on rice genome using molecular markers.
Function
bls1, a BLS-resistance gene, from a rice line DP3, derived from the wild rice species Oryza rufipogon Griff [1]. The quantitative trait locus (QTL) qBlsr5a has been proved to have the largest effect on the resistance to rice bacterial leaf streak [2]. Li et al. 2008 have analyzed total proteins of leaves of rice cultivar 9311 which had been inoculated by ‘89773-1-1’, a kind of Xooc with strong pathogenicity, in order to find out some proteins associated with the resistance to this pathogen [3].They found that these proteins are involved in many resistant reactions associated with signal recognition and transduction, cell-wall reinforcement and biosynthesis of phytoalexins, etc[3].
Expression
According to the research, the BLS resistance in DP3 was controlled by recessive gene(s). To further confirm the inheritance pattern of BLS resistance, BC2F2 (9311/DP3//9311) populations were evaluated by JZ-8 strain inoculation. The damage severity scores of 307 individuals in BC2F2 population ranged from 0 to 9, and showed a pattern of bimodal distribution (Fig. 2). The segregation of resistant and susceptible plants well fitted in 1:3 ratio , suggested that a recessive gene, tentatively designated as bls1, conferred BLS resistance in DP3 [1].
Evolution
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Labs working on this gene
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References
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Structured Information
| Gene Name |
Os06g0100266 |
|---|---|
| Description |
Hypothetical protein |
| Version |
NM_001187627.1 GI:297724384 GeneID:9267053 |
| Length |
7113 bp |
| Definition |
Oryza sativa Japonica Group Os06g0100266, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 6:33130..40242 |
| Sequence Coding Region |
33130..33135,33283..33362,33749..33907,40200..40242 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008399:33130..40242 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008399:33130..40242 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggaagggcccaaagccagctcgtctgctctgggtgctgtaatctgctcatgtatccagccggagcaacgtcggtttgctgcacagccgctcgcgaagtacacactggagttgtgtgtgtctacgccgccgccggtggccgctgcggccatgaaggagtgtgtgcttgatgagtacgccaccaagcacaggatctccatcgataggtttctccagcttaggatatttgtcaaggtgcatgatcggcggcgcgtcggggcttccctgacttccagcactcctttctaa</cdnaseq> |
| Protein Sequence |
<aaseq>MEGPKASSSALGAVICSCIQPEQRRFAAQPLAKYTLELCVSTPP PVAAAAMKECVLDEYATKHRISIDRFLQLRIFVKVHDRRRVGASLTSSTPF</aaseq> |
| Gene Sequence |
<dnaseqindica>1..6#154..233#620..778#7071..7113#atggaagttttttttactactgtgttctgttgtctgaaatgaaaataatgcatggagaatgcttttgtcctctgaaaatgaaaatgctagctgctgaaatgtgacattcagtcagtctctgaactctgaagagccatgattgtgcaatttcaggggcccaaagccagctcgtctgctctgggtgctgtaatctgctcatgtatccagccggagcaacgtcggtttgctgcacagttcgtagtaccgtgaccgctgtgcctgctcccgatatgcacatcattcactcaggtttacatctcaacgttttttttgcaactaatgtggcatctgaaaattgagtttctttgcatctaaattttagagtagtttagaaatttatattgtatcctctctgttttatttacaaaaatgagtagtttttggtttttagagcagaaatctagctgcaatgttcacaaaaatgtaaagagagattaaaggggaacacaaccaacttccgggatccgcaacagcacgcgcgttgcgatgattgtgcctgcagtcaggtccctaatccgccgaccttagctatgtgattcatttttgtgttgctgtcatcagtgtttcacttgttctgtaggccgctcgcgaagtacacactggagttgtgtgtgtctacgccgccgccggtggccgctgcggccatgaaggagtgtgtgcttgatgagtacgccaccaagcacaggatctccatcgataggtttctccagcttaggatatttgtcaaggtgcatgatcggtaaggcctcatccatctccactagacgttgagcttcaagtgcgagcagacttgccactttcctgtattagatcagtagccgatgaatatgataatttcaactaagaaagttcgattgccgatctttatttatgtctttggcacaatgggggacatcctgatctatcatcataaatgctaactcactgaaattttggcacagctacttagtgacagcaaatttgatcttaatgcaatatgtcacccaaataatcttccaaaggttaccttgttcactaattgggagatgatttactgtatctttttcaatggaatagatgatttattgtatcataataacatctaatggttatttgcactctctcagggcttaaagtcactgcatacgtgaggtgctcgagcagtaggaatctgcatctaccatggatgatgttgctacataaacaaaacaatataattgctggtattattttcaacttttggtccttttgactctattaaattctttatccattactgtttctcgatagtttgttgtgaatgttgcctgcacattcaaatgatatgtgggattagtttccagtcactgaagtgcaaaccttagctagatctcttctgatgcagaaatctcactttttgtctgggtgaattctacacatttcagaccagaaaaatcttggtacaagtcttaatacaagccatttagttatcagcatatatattcactgtgtggtagctatactctaaaaaatattcaaagaaagtaggggtgcagtggttatgccgctgtttaataatctgctgaaggaaatagcaacattgcaaagaggtgcaaacggtgctacttgatgctgaaacctgagtaccagtcattttaattgtagctgtttgcagcaaagttttcgctaaatgtagtgcataaacttaatttatttttgccgcttgaaacttatatatacacaggcaactgtttttttttttcatttccaaaggcttccatccgtattaaccttgtttttttattaaagtattaaatttttggttagcagtattttgttatgtgttttagatttaatgcttctagaatatttctctatatgtattcatgttctatgaaaatgctatcttttggtgttccatgcaaagaggtatatatgtgaactgaatgttgcggttatttaaatattcacaatttgcacactcatgatctatttcagaaacttaaaaccaagtacccaatagttttgacaaatgaacactattttgtttgcacagaataaaaaatgtgatgatgctgttgggttgttattaaattgactaattgttttagcccttggtcccatccaaaaaaactggctttgcaagccaacacattcagtggttaacgagtagcatatttttatatataatgatattactaaatgtttgagagttttactttcatatatgtgccttacttatttatatatttcaggagtcttcttaaggattagattattgtcgttgaaaaaccatccactatagctgctacctctactcactttggcacaccatctaaaaatgcagagaagcaggttaatttatagtgggtgagcttaatccactgtagaaagcagaatatgaatgcaacaggctgcctgctatgattgatgctcatttattcagagattatcatttagcattctggtacttgatgagaagttataggtatccttctactttttttagtgaggcgatctaatttgaattttctcattcaatttgaggtttgtgacctgatttaagcccaacttttttctctttcaattctcatcatgtatgcctgcctggcatgtggttggcaatgtaagaaaatgttggatgtggttcatgtggcatgcaacaggccttggcctaagtgatgtctagcaggcagagcagataagattggttcagagatgttatttttcttccaccatcctttaattttcttctatttctttcttgaagtggatagaaccaattacttcatattataggtttatcttgcattgccctctccattcagttatctttaattcagttgtgtttcgaggcgtgctacagctcctgccttgtgggtttaattaggaatggaaatttcttactgatgcaggtttggtctcttctgtgcatggggtcaaccccaggatggtgatctgcatctatggcttccccaccaatgtcgctgccatctaggtacgaatcaattcagtccaatcatctcctctagcatctgttcttgatataggaaaaaaaagtatttttttggtagatcatgttatgtgatagtcgtccatgacctgttctacttccttcctcagcatttactgttgtaggtttccacattcactaggtttccatactcttaacacgcaagaagtagagcccaaggtttcttatatattttgcctgttctacaagaggattgagatgtttagtgtaatcctttgtgactcatggacaaaaccatgtaggtccttgttgatatatatggtgatccagaactccttgttgcatatggtattgttttttcttttcctttgtgcacacttagtttgtgaggcagttgattttgaccttcctttccatagaaaaaatatttccttttatgttgttttaaattccatgtgctaactcagatttattgtgattagttgttgttgtgctaatcttcaaatgtttagtatattttgtgcattttgatgctctattgctctgcaaaccatggcttttgaatgcactattttggttggacaggtaaatgtgttgtaggactattttagctaggattcataaactttgcactacacatcgctgctggtttttgtcctaaatagggacagttatttaggacataatttgaagattgaatttttctgctatttgaatcacaattgagttgctggtgataaatgttatccaaggcttgagtgctcgacactatttattatttcattctttttctgatattcctctagcaatttgcattaaaaagtttctgatatttctcaaaatgtacataaaataatctttagtcaaatcatgaattcgttgacgtgtgattggttatattgtacgaaacaatgctctctagcagtcatgcaaggtgttcaatacatgtgtcttggatattgaaactagattccatggtttacatctcaatttttttgccgcaccacatgagttaacctctttgcagcttgctgcatataatttacttgccacgattaattacccatacagcttaccacgaactaggggaataacctcattatggaaaatcaagacaactttcttaatgttgtatcttgatgtgcattcttttgaatctaggcttatttttatgcagttaaatttatgatttatactcctccaagttccatcagcccgctttgtataatattatgctttagatgggattagaggcctttcaaaggcagaaagagaaattatgctcctccagttggcctaggcttcaactctgggtttttatttctattgctggtcattcatacacaagatttcatgagcccacagttcaccttttggtcctacctcatttatcagcataggcgatagtagttgatgattatataccatttcccagactattccgaaagagcctaatgttggggatatttcaaggatgctaattgttgtaatgggtgcaagccatgttattaatgggtcatgaggaattagtctctgaccaaagtatctaaaaaatgctaagaaagaccaatttgtggtgctacttgatcccaagaaacaaggtgtacaggaagggaatgtgaaatcggtttctcactttttatggtagtcagtatctaaatcttacagtagaaaccaccttgaccgtgctgaaatggcatgagttattgaggctgctggtagaacacttgaaactttgcctcatttttgctgcttgatcttcatttcagccaattgcttgttagctatttagcttcatgttgcgattcatgttttgagcagcatttgtaaaatcatttatttaagaaagtggccatggacaagctcttttagatattgctaccttactatctttgggagagaaaaatgttgaatgaacattactagccatgatttggcaagaggccttcagattacgtgactattttgtattgatttgtac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