Difference between revisions of "Os06g0100266"
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===Evolution=== | ===Evolution=== | ||
| − | + | The common wild rice (O. rufipogon Griff.) is considered as wild ancestor of cultivated rice. The wild rice species with AA genome has been well recognized as a primary gene pool that conserves a lot of specific genes such as genes resistance to grassy stunt virus from annual wild rice <ref name="ref1" />. | |
| − | + | It is believed that the frequency of resistance genes in wild rice is 50 times higher than that in cultivated rice because it has undergone a long history of natural selection and contained rich genetic diversity <ref name="ref1" /><ref name="ref4" />. | |
| − | |||
==Labs working on this gene== | ==Labs working on this gene== | ||
Revision as of 06:01, 24 May 2014
Please input one-sentence summary here.
Contents
Annotated Information
The rice bacterial leaf streak (BLS)which has seriously constrained the rice production in humid tropical and subtropical areas of Asia and Africa.When rice is infected by the BLS pathogen, leaves become yellow or even blasted, the rate of unfilled grains will increase, and the grain weight will decrease. In recent years, some QTLs for BLS resistance have been mapped on rice genome using molecular markers.
Function
bls1, a BLS-resistance gene, from a rice line DP3, derived from the wild rice species Oryza rufipogon Griff [1]. The quantitative trait locus (QTL) qBlsr5a has been proved to have the largest effect on the resistance to rice bacterial leaf streak [2]. Li et al. 2008 have analyzed total proteins of leaves of rice cultivar 9311 which had been inoculated by ‘89773-1-1’, a kind of Xooc with strong pathogenicity, in order to find out some proteins associated with the resistance to this pathogen [3].They found that these proteins are involved in many resistant reactions associated with signal recognition and transduction, cell-wall reinforcement and biosynthesis of phytoalexins, etc[3].
Expression
According to the research, the BLS resistance in DP3 was controlled by recessive gene(s). To further confirm the inheritance pattern of BLS resistance, BC2F2 (9311/DP3//9311) populations were evaluated by JZ-8 strain inoculation. The damage severity scores of 307 individuals in BC2F2 population ranged from 0 to 9, and showed a pattern of bimodal distribution (Fig. 2). The segregation of resistant and susceptible plants well fitted in 1:3 ratio , suggested that a recessive gene, tentatively designated as bls1, conferred BLS resistance in DP3 [1].
Evolution
The common wild rice (O. rufipogon Griff.) is considered as wild ancestor of cultivated rice. The wild rice species with AA genome has been well recognized as a primary gene pool that conserves a lot of specific genes such as genes resistance to grassy stunt virus from annual wild rice [1]. It is believed that the frequency of resistance genes in wild rice is 50 times higher than that in cultivated rice because it has undergone a long history of natural selection and contained rich genetic diversity [1][4].
Labs working on this gene
Please input related labs here.
References
Please input cited references here.
Structured Information
| Gene Name |
Os06g0100266 |
|---|---|
| Description |
Hypothetical protein |
| Version |
NM_001187627.1 GI:297724384 GeneID:9267053 |
| Length |
7113 bp |
| Definition |
Oryza sativa Japonica Group Os06g0100266, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 6:33130..40242 |
| Sequence Coding Region |
33130..33135,33283..33362,33749..33907,40200..40242 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008399:33130..40242 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008399:33130..40242 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggaagggcccaaagccagctcgtctgctctgggtgctgtaatctgctcatgtatccagccggagcaacgtcggtttgctgcacagccgctcgcgaagtacacactggagttgtgtgtgtctacgccgccgccggtggccgctgcggccatgaaggagtgtgtgcttgatgagtacgccaccaagcacaggatctccatcgataggtttctccagcttaggatatttgtcaaggtgcatgatcggcggcgcgtcggggcttccctgacttccagcactcctttctaa</cdnaseq> |
| Protein Sequence |
<aaseq>MEGPKASSSALGAVICSCIQPEQRRFAAQPLAKYTLELCVSTPP PVAAAAMKECVLDEYATKHRISIDRFLQLRIFVKVHDRRRVGASLTSSTPF</aaseq> |
| Gene Sequence |
<dnaseqindica>1..6#154..233#620..778#7071..7113#atggaagttttttttactactgtgttctgttgtctgaaatgaaaataatgcatggagaatgcttttgtcctctgaaaatgaaaatgctagctgctgaaatgtgacattcagtcagtctctgaactctgaagagccatgattgtgcaatttcaggggcccaaagccagctcgtctgctctgggtgctgtaatctgctcatgtatccagccggagcaacgtcggtttgctgcacagttcgtagtaccgtgaccgctgtgcctgctcccgatatgcacatcattcactcaggtttacatctcaacgttttttttgcaactaatgtggcatctgaaaattgagtttctttgcatctaaattttagagtagtttagaaatttatattgtatcctctctgttttatttacaaaaatgagtagtttttggtttttagagcagaaatctagctgcaatgttcacaaaaatgtaaagagagattaaaggggaacacaaccaacttccgggatccgcaacagcacgcgcgttgcgatgattgtgcctgcagtcaggtccctaatccgccgaccttagctatgtgattcatttttgtgttgctgtcatcagtgtttcacttgttctgtaggccgctcgcgaagtacacactggagttgtgtgtgtctacgccgccgccggtggccgctgcggccatgaaggagtgtgtgcttgatgagtacgccaccaagcacaggatctccatcgataggtttctccagcttaggatatttgtcaaggtgcatgatcggtaaggcctcatccatctccactagacgttgagcttcaagtgcgagcagacttgccactttcctgtattagatcagtagccgatgaatatgataatttcaactaagaaagttcgattgccgatctttatttatgtctttggcacaatgggggacatcctgatctatcatcataaatgctaactcactgaaattttggcacagctacttagtgacagcaaatttgatcttaatgcaatatgtcacccaaataatcttccaaaggttaccttgttcactaattgggagatgatttactgtatctttttcaatggaatagatgatttattgtatcataataacatctaatggttatttgcactctctcagggcttaaagtcactgcatacgtgaggtgctcgagcagtaggaatctgcatctaccatggatgatgttgctacataaacaaaacaatataattgctggtattattttcaacttttggtccttttgactctattaaattctttatccattactgtttctcgatagtttgttgtgaatgttgcctgcacattcaaatgatatgtgggattagtttccagtcactgaagtgcaaaccttagctagatctcttctgatgcagaaatctcactttttgtctgggtgaattctacacatttcagaccagaaaaatcttggtacaagtcttaatacaagccatttagttatcagcatatatattcactgtgtggtagctatactctaaaaaatattcaaagaaagtaggggtgcagtggttatgccgctgtttaataatctgctgaaggaaatagcaacattgcaaagaggtgcaaacggtgctacttgatgctgaaacctgagtaccagtcattttaattgtagctgtttgcagcaaagttttcgctaaatgtagtgcataaacttaatttatttttgccgcttgaaacttatatatacacaggcaactgtttttttttttcatttccaaaggcttccatccgtattaaccttgtttttttattaaagtattaaatttttggttagcagtattttgttatgtgttttagatttaatgcttctagaatatttctctatatgtattcatgttctatgaaaatgctatcttttggtgttccatgcaaagaggtatatatgtgaactgaatgttgcggttatttaaatattcacaatttgcacactcatgatctatttcagaaacttaaaaccaagtacccaatagttttgacaaatgaacactattttgtttgcacagaataaaaaatgtgatgatgctgttgggttgttattaaattgactaattgttttagcccttggtcccatccaaaaaaactggctttgcaagccaacacattcagtggttaacgagtagcatatttttatatataatgatattactaaatgtttgagagttttactttcatatatgtgccttacttatttatatatttcaggagtcttcttaaggattagattattgtcgttgaaaaaccatccactatagctgctacctctactcactttggcacaccatctaaaaatgcagagaagcaggttaatttatagtgggtgagcttaatccactgtagaaagcagaatatgaatgcaacaggctgcctgctatgattgatgctcatttattcagagattatcatttagcattctggtacttgatgagaagttataggtatccttctactttttttagtgaggcgatctaatttgaattttctcattcaatttgaggtttgtgacctgatttaagcccaacttttttctctttcaattctcatcatgtatgcctgcctggcatgtggttggcaatgtaagaaaatgttggatgtggttcatgtggcatgcaacaggccttggcctaagtgatgtctagcaggcagagcagataagattggttcagagatgttatttttcttccaccatcctttaattttcttctatttctttcttgaagtggatagaaccaattacttcatattataggtttatcttgcattgccctctccattcagttatctttaattcagttgtgtttcgaggcgtgctacagctcctgccttgtgggtttaattaggaatggaaatttcttactgatgcaggtttggtctcttctgtgcatggggtcaaccccaggatggtgatctgcatctatggcttccccaccaatgtcgctgccatctaggtacgaatcaattcagtccaatcatctcctctagcatctgttcttgatataggaaaaaaaagtatttttttggtagatcatgttatgtgatagtcgtccatgacctgttctacttccttcctcagcatttactgttgtaggtttccacattcactaggtttccatactcttaacacgcaagaagtagagcccaaggtttcttatatattttgcctgttctacaagaggattgagatgtttagtgtaatcctttgtgactcatggacaaaaccatgtaggtccttgttgatatatatggtgatccagaactccttgttgcatatggtattgttttttcttttcctttgtgcacacttagtttgtgaggcagttgattttgaccttcctttccatagaaaaaatatttccttttatgttgttttaaattccatgtgctaactcagatttattgtgattagttgttgttgtgctaatcttcaaatgtttagtatattttgtgcattttgatgctctattgctctgcaaaccatggcttttgaatgcactattttggttggacaggtaaatgtgttgtaggactattttagctaggattcataaactttgcactacacatcgctgctggtttttgtcctaaatagggacagttatttaggacataatttgaagattgaatttttctgctatttgaatcacaattgagttgctggtgataaatgttatccaaggcttgagtgctcgacactatttattatttcattctttttctgatattcctctagcaatttgcattaaaaagtttctgatatttctcaaaatgtacataaaataatctttagtcaaatcatgaattcgttgacgtgtgattggttatattgtacgaaacaatgctctctagcagtcatgcaaggtgttcaatacatgtgtcttggatattgaaactagattccatggtttacatctcaatttttttgccgcaccacatgagttaacctctttgcagcttgctgcatataatttacttgccacgattaattacccatacagcttaccacgaactaggggaataacctcattatggaaaatcaagacaactttcttaatgttgtatcttgatgtgcattcttttgaatctaggcttatttttatgcagttaaatttatgatttatactcctccaagttccatcagcccgctttgtataatattatgctttagatgggattagaggcctttcaaaggcagaaagagaaattatgctcctccagttggcctaggcttcaactctgggtttttatttctattgctggtcattcatacacaagatttcatgagcccacagttcaccttttggtcctacctcatttatcagcataggcgatagtagttgatgattatataccatttcccagactattccgaaagagcctaatgttggggatatttcaaggatgctaattgttgtaatgggtgcaagccatgttattaatgggtcatgaggaattagtctctgaccaaagtatctaaaaaatgctaagaaagaccaatttgtggtgctacttgatcccaagaaacaaggtgtacaggaagggaatgtgaaatcggtttctcactttttatggtagtcagtatctaaatcttacagtagaaaccaccttgaccgtgctgaaatggcatgagttattgaggctgctggtagaacacttgaaactttgcctcatttttgctgcttgatcttcatttcagccaattgcttgttagctatttagcttcatgttgcgattcatgttttgagcagcatttgtaaaatcatttatttaagaaagtggccatggacaagctcttttagatattgctaccttactatctttgggagagaaaaatgttgaatgaacattactagccatgatttggcaagaggccttcagattacgtgactattttgtattgatttgtac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|
| External Link(s) |
- ↑ 1.0 1.1 1.2 1.3 Cite error: Invalid
<ref>tag; no text was provided for refs namedref1 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedref2 - ↑ 3.0 3.1 Cite error: Invalid
<ref>tag; no text was provided for refs namedref3 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedref4
