Difference between revisions of "Os05g0554400"
Jiafuxiong (talk | contribs) (→Function) |
Jiafuxiong (talk | contribs) (→Function) |
||
| Line 3: | Line 3: | ||
==Annotated Information== | ==Annotated Information== | ||
===Function=== | ===Function=== | ||
| − | |||
In vascular plants, the regulation of stem cell niche determines development of aerial shoot which consists of stems and lateral organs. Intercalary meristem (IM) controls internode elongation in rice and other grasses, however little attention has been paid to the underlying mechanism of stem cell maintenance. Here, we investigated the stem development in rice and showed that the Shortened Uppermost Internode 1 (SUI1) family of genes are pivotal for development of rice stems. We demonstrated that SUI-family genes regulate the development of IM for internode elongation and also the cell expansion of the panicle stem rachis in rice. | In vascular plants, the regulation of stem cell niche determines development of aerial shoot which consists of stems and lateral organs. Intercalary meristem (IM) controls internode elongation in rice and other grasses, however little attention has been paid to the underlying mechanism of stem cell maintenance. Here, we investigated the stem development in rice and showed that the Shortened Uppermost Internode 1 (SUI1) family of genes are pivotal for development of rice stems. We demonstrated that SUI-family genes regulate the development of IM for internode elongation and also the cell expansion of the panicle stem rachis in rice. | ||
Revision as of 06:58, 24 May 2014
Please input one-sentence summary here.
Contents
Annotated Information
Function
In vascular plants, the regulation of stem cell niche determines development of aerial shoot which consists of stems and lateral organs. Intercalary meristem (IM) controls internode elongation in rice and other grasses, however little attention has been paid to the underlying mechanism of stem cell maintenance. Here, we investigated the stem development in rice and showed that the Shortened Uppermost Internode 1 (SUI1) family of genes are pivotal for development of rice stems. We demonstrated that SUI-family genes regulate the development of IM for internode elongation and also the cell expansion of the panicle stem rachis in rice.
Expression
Please input expression information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this gene
Please input related labs here.
References
Please input cited references here.
Structured Information
| Gene Name |
Os05g0554400 |
|---|---|
| Description |
Phosphatidyl serine synthase family protein |
| Version |
NM_001062804.1 GI:115465338 GeneID:4339554 |
| Length |
5432 bp |
| Definition |
Oryza sativa Japonica Group Os05g0554400, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 5:27634371..27639802 |
| Sequence Coding Region |
27634761..27634915,27635631..27635696,27635877..27635936,27636331..27636421,27636799..27636853 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008398:27634371..27639802 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008398:27634371..27639802 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggaggcgaagcagaggacgaggcatcgcgacggagaggagaggaggctcgtagcggcggcggatggcggcgccgaggagtacgacccatggacggcgtggctctacaagccgcacaccatctcggtgctcctcgtcggtgcttgccttctaatttgggcaagtggagcgcttgatccagagggtgcttcttatcacagtagtgcgacatctattaagaggggtgtctgggctatgattgcagtcttccttgcttactgcactctccaagcaccttcaacgatacttattaggccccatcctgctgtctggcgcctggtgcacggactggctgtcgtttaccttgtcgctctagcctttcttcttttccagaaccgcgatgatgctcgccagttcatgaaacacctttaccctgatcttggagttgaattgccggagagatcttatggagctgactgccgtctgtatgttccggaaaaccctaaaaacaagttcataaatatttatacattatttgacgaatttgtggttgcccatattttgggttggtggggtaaagccgtaatgatacgaaaccagcttcttctttgggtcctctcgattggtttcgagctaatggagcttacattcagacatatgttgccaaactttaatgagtgctggtgggatagtattattttggatatcttgatctgcaactggtttggtatatgggcggggatgcacacagtccgttactttgacggtaaaacatatgagtgggttggactgagccgacagccaagcatcatgggcaaggtgaaaagatcactgagccagttcacccctgcacaatgggacaaggatcaatggtaccctttcatggggccgttgcggttcgttcaagtgttgttcctgtgcgttgttttcatgacagtggagctcaacacattttttcttaaattttgcctctggattcctccaaggaatcctttggttgtgtacagattaatcctatggtggttgattgctattccaaccatccgtgagtacaactcctacttgcaaaacagcaaaccggtgaagaaggttggggctttttgctggctctctctagctatatgcattgtagagcttcttatatgtatgaagtttggacatgggctgtttcatgatcccatgcctacttggttgatcatcttttggagttcggtgggggtagcactagtggttttcttgcttgcatggtcttggaggaatcacctgaaatatcagagaaagcggctataa</cdnaseq> |
| Protein Sequence |
<aaseq>MEAKQRTRHRDGEERRLVAAADGGAEEYDPWTAWLYKPHTISVL LVGACLLIWASGALDPEGASYHSSATSIKRGVWAMIAVFLAYCTLQAPSTILIRPHPA VWRLVHGLAVVYLVALAFLLFQNRDDARQFMKHLYPDLGVELPERSYGADCRLYVPEN PKNKFINIYTLFDEFVVAHILGWWGKAVMIRNQLLLWVLSIGFELMELTFRHMLPNFN ECWWDSIILDILICNWFGIWAGMHTVRYFDGKTYEWVGLSRQPSIMGKVKRSLSQFTP AQWDKDQWYPFMGPLRFVQVLFLCVVFMTVELNTFFLKFCLWIPPRNPLVVYRLILWW LIAIPTIREYNSYLQNSKPVKKVGAFCWLSLAICIVELLICMKFGHGLFHDPMPTWLI IFWSSVGVALVVFLLAWSWRNHLKYQRKRL</aaseq> |
| Gene Sequence |
<dnaseqindica>391..545#1261..1326#1507..1566#1961..2051#2429..2483#2573..2652#2766..2879#2962..3046#3573..3664#4208..4461#4558..4646#5064..5191#tcatccaacccaagtacccaacccgcgtcgtcatcgtcgtcttcctacttcctcctcctccccaccccacgcacgcgcgtgcggcgccgatcgcggccgacgccgagatttccgcgtgcgcgtggagatagggcacacccgttctctctctccctctctcgggctctgaagtaatccttcgcttctgcttctttcttcttctgcatgtcctgtctgtccccctcgtctcgtctcgtctcgtctcgtctcttgctttcgcctctcctgacctgaccgcgacaatccgtggtggttatatcgcgcaggcgcttcgcttggtttggcgtgttgtttggctgccgcggcagttttctcctgtcacatatcgcagagggttctggaagtgggaacatggaggcgaagcagaggacgaggcatcgcgacggagaggagaggaggctcgtagcggcggcggatggcggcgccgaggagtacgacccatggacggcgtggctctacaagccgcacaccatctcggtgctcctcgtcggtgcttgccttctaatgtaagtgctcttccacgattaaatttcacaaattcgtttttatttttttttctcgctttgctgcctctgcctgtgacttaagggctaaggctgtaaatttcttggtgggagaactggaaaaaaaggccttgttgtgttggggcaaagtacaattcaacagatgccagggcttctgcctatcaggtgcatcaacagtgtcagagttgaaagcagggcatgtagtactcattgtgatttttttactttctctgaaagaaaaaggtgaaatttttgggtcgggaaatttagtgattttgtgccagcaagttgaggtttctgaatgattgaacgaacatgaaagcatggcagtctggttcagcaaggctagcaaacaaccgagcgtacgagtggctgaggagaatcggaatcatgttcaagaatctcgtgcgaaagcttccctagaacaatcattttttcccatatcatttttagcaggtgcaaattacatgggaagtacattcctctcgtcccttttttttaactgtagaaacggctcaccaagaactttattgttgctattgcttcatgaaaggattaagcatataactttgtgtctgaaacaaccattagctaggctaggctgttgagtggttggttgtgaacttgctggggcgttctccttttcactttctcgtggtgctgtctgatttcatgttcaatcatgttcccgtttcagttgggcaagtggagcgcttgatccagagggtgcttcttatcacagtagtgcgacatctattaagaggtaatgaccgaaaaccttttttttttactttactggaaagtgatgcaatcatctaagggaactctggttacttctctactttgattgtgtcttttggacttgagctgttctcctctcaccactgcacaatgattgggagagagtgacactgactcatattttctcactgacactctccaggggtgtctgggctatgattgcagtcttccttgcttactgcactctccaagcaccttcaacgtgagttagcccccctcttcttatatgtatttcaaacattggaactatgttagtgcagtggctgtcgttgtcaggcatttttctttaagtagggaaattgaaggttttctgcttcaaagaggtgacccacgtgttactgtatgagtgagaccatatagtggccaattctcttgaaagtgtagggcttattattcgtcaggttgtttttaatggtgacacaaaaattaccttgagggacccaataccaatgccattctcatgctgtttttgtacttgctacttttgtcttctttatctccttgggttcataacaatttgagaacctgtaaatctactgtgcatctctaatatttttgcatgatgatgattcaatgttctggcaatattgtcacaggatacttattaggccccatcctgctgtctggcgcctggtgcacggactggctgtcgtttaccttgtcgctctagcctttcttcttttccaggttagttgttactattgaaaaattcatacatcgataaagtaggacaaaaaatgccctttcaataatatcccatgcacgtaaaatgttagaaaatggcgggagatgtctattattcatagggttattttgggaagttcttacaggagcgtgaagtggcaagtatttgtgaaagaaaaaacttgagatccaagcaaatgcaaattgtcttgtcaaaaaaaaaagttggaagtcttgtatccaaactatttgattatcaaaattcagtataaatggcattttttcaagactcttgagcgaggggcctcaactacgtagagatatgctacatcttggatatcttgtactgtaataattcttatttctttctcgttttccagaaccgcgatgatgctcgccagttcatgaaacacctttaccctgatcttggagttggtaatatctttacatcgaaaggatttacactggaaattaaatattgtagaagaaatggtgctgacaaacatttctgtacactaatgcagaattgccggagagatcttatggagctgactgccgtctgtatgttccggaaaaccctaaaaacaagttcataaatatttatgtatgatttttcatttgaaccttcctatttcatgctctggtttttgttattattgtagttattatcattgttattaccccatcatatttgacggtttgatatacatataggagacattatttgacgaatttgtggttgcccatattttgggttggtggggtaaagccgtaatgatacgaaaccagcttcttctttgggtcctctcgattggtttcgagctaatggaggttagatatggttactcaaccttttgttatcttttacttgttatctctaacaaggtattgtgcttattatgaccttttgcagcttacattcagacatatgttgccaaactttaatgagtgctggtgggatagtattattttggatatcttgatctgcaactggtttggtaggacaatcggagacagctgactttcatgttgtatacattcagtgacattgatgatacattttttacatctaaagttattagtaaaacaaagttaggcagattaaaataatatagtgtttttgggtttgcatattttatacagtttgtttggatctaactcttatcaactgaacatgataatatagaaaatgaatagcgatgtgatgtatctgagagttttaagaagaaaacttagacctgatgcacatgcatactgctgacattaaacacttactgtttatgaagtaatataatttatcttcttctatcagttcatgggttgaaagcaatctttctatttcagtaaccagttattgaaagagtacctgcatatgcacgttagggtcaaaagtgacaagtaaatgtgaatggaggaagaacaaatctgccatataagcctcactcttagcagtaggctatggagtgttttatgtgttcagcttcatctaaatattttggctgaaatgctaatattcttattcaggtatatgggcggggatgcacacagtccgttactttgacggtaaaacatatgagtgggttggactgagccgacagccaagcatcatgggcaaggtatgttaccaaacaaacaaattgtttcttatttgcaaataggttagtacctttttttaggactgttcttttaatcttcattcatcatggcccttaggcctagattttttttttgtacctgctgaattttcctgggctattgtgctttttgtaagaatttcctcatcgattctttcttgagttacgacttacaagagcctcttgctactgctaagtccatgggagcattctataacaatgcagtcgctgagcaaaagtaaatcactttgacttcttgtctgtagtacgccaaacaacatgtgaggttttcccagtgggactgtattgatttctgttgctctgtccaaactctaaactgtcaattgccattattgatacctgacttcataatttattttgttgtataccattctggcattcagtgtgttttatctgattggactatatgcacatttgtgcagttacattctgcttcagactgcatactatagttaggttgaacccatttacagtttaccgaccttcctttacttgcatatgcaggtgaaaagatcactgagccagttcacccctgcacaatgggacaaggatcaatggtaccctttcatggggccgttgcggttcgttcaagtgttgttcctgtgcgttgttttcatgacagtggagctcaacacattttttcttaaattttgcctctggattcctccaaggaatcctttggttgtgtacagattaatcctatggtggttgattgctattccaaccatccgtgagtacaactcctacttgcaaaacaggttatcccaatttccctgcacgcccaatagcattgcacattttttacaattttacttaatggcttgctaatatatattttttcatggtcacaccagcaaaccggtgaagaaggttggggctttttgctggctctctctagctatatgcattgtagagcttcttatatgtatgaagtttggacatggtgagttactctcttctgacatcatcatcacttgtgaaataattgatctgatttgaaaaattaccttatggtcgcttgattttctcgtgatatatactactccctccggttctataataattaacgttttggacaaagttaaggtcaaacttttataactttgaccatcaataactttaaaaatatttagtttaaagaaactagaacaacatatatagatttgtctttcaaaacactataataaaagtaaacatgtatttatttattgtatatattataatagaaaaataagatcaaaggtatattttgtagaccgtgtcattgtctaaaacatcaattaaaatgaaaccggagggagtagtatatatttggaacattaaatgttaagagtgcctaacttttttgtaatctggatagggctgtttcatgatcccatgcctacttggttgatcatcttttggagttcggtgggggtagcactagtggttttcttgcttgcatggtcttggaggaatcacctgaaatatcagagaaagcggctataatggattaatttttcggaagattttcgactctggacccccttcaaacttgtttcttcttcttgataggatgtacatatgtgatgggtgatgatgtaacttaaatgtgatgggtaattatgtaactttaaatcctaggataaagcaattttcagctacatttcacattatgttttacaatagccaattgttgcctcgcaagagggatggctaatttcagattaataagtgaaatattaccatg</dnaseqindica> |
| External Link(s) |
