Difference between revisions of "Os05g0429900"
Zhangamanda (talk | contribs) (→Expression) |
Zhangamanda (talk | contribs) (→Expression) |
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[[File:zxq1.png|200px|thumb|left|Fig. 1. RNA blot analysis.]] | [[File:zxq1.png|200px|thumb|left|Fig. 1. RNA blot analysis.]] | ||
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| + | Fig:Transcripts of OsSSI2, two OsSSI2 homologs, | ||
| + | WRKY45, and PR1b were analyzed in wild-type (WT) and OsSSI2 mutant | ||
| + | plants. OsSSI2 transcripts were not detected in homozygous Osssi2-Tos17 | ||
| + | (NF7039) and OsSSI2-knockdown (kd) plants, whereas the expression of | ||
| + | the two closest homologs of OsSSI2 (i.e., Os04g0379900 and | ||
| + | Os01g0880800) was unaffected in these plants. The arrow indicates a band | ||
| + | of fusion transcripts encoding OsSSI2 with the Tos17 insertion. The salicylic | ||
| + | acid/benzothiadiazole-induced gene WRKY45 and the pathogenesis-related | ||
| + | gene OsPR1b were constitutively expressed in the NF7039 and OsSSI2-kd | ||
| + | plants. Leaf blades from the fourth leaves of seedlings were used. | ||
===Evolution=== | ===Evolution=== | ||
Revision as of 02:13, 25 May 2014
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Contents
Annotated Information
Function
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Expression
Prediction of subcellular targeting by using the TargetP and WoLF PSORT prediction programs suggested that Os01g0919900, Os01g0880800, and Os08g0199400 are localized in the chloplast or mitochondrion, whereas the others are present in chloroplasts.
Fig:Transcripts of OsSSI2, two OsSSI2 homologs,
WRKY45, and PR1b were analyzed in wild-type (WT) and OsSSI2 mutant
plants. OsSSI2 transcripts were not detected in homozygous Osssi2-Tos17
(NF7039) and OsSSI2-knockdown (kd) plants, whereas the expression of
the two closest homologs of OsSSI2 (i.e., Os04g0379900 and
Os01g0880800) was unaffected in these plants. The arrow indicates a band
of fusion transcripts encoding OsSSI2 with the Tos17 insertion. The salicylic
acid/benzothiadiazole-induced gene WRKY45 and the pathogenesis-related
gene OsPR1b were constitutively expressed in the NF7039 and OsSSI2-kd
plants. Leaf blades from the fourth leaves of seedlings were used.
Evolution
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You can also add sub-section(s) at will.
Labs working on this gene
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References
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Structured Information
| Gene Name |
Os05g0429900 |
|---|---|
| Description |
Similar to MybHv5 (Fragment) |
| Version |
NM_001187510.1 GI:297724150 GeneID:9266213 |
| Length |
1279 bp |
| Definition |
Oryza sativa Japonica Group Os05g0429900, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 5:21106104..21107382 |
| Sequence Coding Region |
21106375..21106894,21106995..21107257 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008398:21106104..21107382 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008398:21106104..21107382 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggggaggtcgccgtgctgcgagaaggcgcacacgaacaagggggcgtggacgaaggaggaggaccagcggctcatcgcgtacatcagggcgcatggcgaaggctgctggcgctcgctgcccaaggcggcgggcctccttcgctgcggcaagagctgccgcctccggtggatgaactacctccgccccgacctcaagcgcggcaacttcaccgacgacgaggacgagctcatcatccgcctccacagcctcctcggcaacaagtggtctctgatcgccgggcagctgccggggaggacggacaacgagatcaagaactactggaacacgcacatcaagcgcaagctcctcgcccgcggcatcgacccgcagacgcaccgcccgctgctcagcggcggtgacggcatcgcggcgagcaacaaggcggcaccaccgccgccgcatcccatatccgtcccggcgaaggcggcggccgcggcgatcttcgccgtggcgaagccgccgccgccgccgcgcccggtcgactcctcggacgacggctgccgcagcagcagcggcacaacgagcacgggggagccgcggtgccccgacctcaacctcgagctctcggtcgggccgacgccgagctcgccgccggcggagacgcccaccagcgcgcggccggtctgcctctgctaccacctcggcttccgcggcggggaggcgtgcagctgtcaggctgacagcaagggcccacacgagtttagatatttcaggccgttggaacaaggccagtacatatga</cdnaseq> |
| Protein Sequence |
<aaseq>MGRSPCCEKAHTNKGAWTKEEDQRLIAYIRAHGEGCWRSLPKAA GLLRCGKSCRLRWMNYLRPDLKRGNFTDDEDELIIRLHSLLGNKWSLIAGQLPGRTDN EIKNYWNTHIKRKLLARGIDPQTHRPLLSGGDGIAASNKAAPPPPHPISVPAKAAAAA IFAVAKPPPPPRPVDSSDDGCRSSSGTTSTGEPRCPDLNLELSVGPTPSSPPAETPTS ARPVCLCYHLGFRGGEACSCQADSKGPHEFRYFRPLEQGQYI</aaseq> |
| Gene Sequence |
<dnaseqindica>489..1008#126..388#ccgccgcggctcacctggaaactgggcagattggacaatcgctcgagcgagctagcgagagagagcgcgagagagcgaggcggcgcgcgcggtggttgcggatttgtagcttagagcgcggggccatggggaggtcgccgtgctgcgagaaggcgcacacgaacaagggggcgtggacgaaggaggaggaccagcggctcatcgcgtacatcagggcgcatggcgaaggctgctggcgctcgctgcccaaggcggcgggcctccttcgctgcggcaagagctgccgcctccggtggatgaactacctccgccccgacctcaagcgcggcaacttcaccgacgacgaggacgagctcatcatccgcctccacagcctcctcggcaacaagtcagtctccctccccccgtctccggcgccgccgccaccgatcgatggagcattcatcaattccttgtgattctcaattcggtttcgcttcttctttcaggtggtctctgatcgccgggcagctgccggggaggacggacaacgagatcaagaactactggaacacgcacatcaagcgcaagctcctcgcccgcggcatcgacccgcagacgcaccgcccgctgctcagcggcggtgacggcatcgcggcgagcaacaaggcggcaccaccgccgccgcatcccatatccgtcccggcgaaggcggcggccgcggcgatcttcgccgtggcgaagccgccgccgccgccgcgcccggtcgactcctcggacgacggctgccgcagcagcagcggcacaacgagcacgggggagccgcggtgccccgacctcaacctcgagctctcggtcgggccgacgccgagctcgccgccggcggagacgcccaccagcgcgcggccggtctgcctctgctaccacctcggcttccgcggcggggaggcgtgcagctgtcaggctgacagcaagggcccacacgagtttagatatttcaggccgttggaacaaggccagtacatatgagatatgaccatgagatgtgagatggcttaattagcttcaattcccaacatgtgtaacacagggagtttttctagtggacgacaatactgtttaatttcagaaaaaaaaagggaaagaaaaaggttctaatctgttcatatttcttactattatccaatcttcatgatctcaatctctctctctctttattatttttctttgtagtaattaacttcatgttggttcctctaaaaaagattggtcgatgttattcagtgataaatattcctag</dnaseqindica> |
| External Link(s) |
