Difference between revisions of "Os01g0149500"
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==Annotated Information== | ==Annotated Information== | ||
===Function=== | ===Function=== | ||
| − | + | The plant genome contains a large number of disease resistance (R) genes that have evolved through diverse mechanisms. Pit confers race-specific resistance against the fungal pathogen Magnaporthe grisea, and is a member of the nucleotide-binding site leucine-rich repeat (NBS-LRR) family of R genes. | |
===Expression=== | ===Expression=== | ||
Revision as of 07:54, 25 May 2014
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Contents
Annotated Information
Function
The plant genome contains a large number of disease resistance (R) genes that have evolved through diverse mechanisms. Pit confers race-specific resistance against the fungal pathogen Magnaporthe grisea, and is a member of the nucleotide-binding site leucine-rich repeat (NBS-LRR) family of R genes.
Expression
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Evolution
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Labs working on this gene
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References
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Structured Information
| Gene Name |
Os01g0149500 |
|---|---|
| Description |
Similar to Resistance gene analog PIC23 (Fragment) |
| Version |
NM_001048560.1 GI:115434533 GeneID:4324511 |
| Length |
3143 bp |
| Definition |
Oryza sativa Japonica Group Os01g0149500, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 1:2682222..2685364 |
| Sequence Coding Region |
2682222..2683988 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008394:2682222..2685364 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008394:2682222..2685364 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgggcacagttttggatgctctcgcttggaaattcttggaaaagctgggtcaacttattgaggatgaggttatcatgacattaagtgtgaaaaggggtattgagagcctgaagaaaaatctggaattcttcaacgctgttcatgaggatgctgaggctctggccatggaggatccagggatagattcatggtggaagaacatgagagatgttatgtttgatgtcgatgacatcgtagatcttttcatggttcattcacagaagctcttgctgccaccaaggccggtatgttgcaatcagcccttgttctctagctttgcaaagttttcatttgatcacatgattgccaaaagaattgataatataaatgaaaagtttgaagaaattaaaatgaacaaagagatgtttggcttggagagaaccaacgggcaacaaatccagataacaattgttgacagaagtcagacatctcctgtagatgaacttgaggtggttggagaagatatcagaagggctattgatgacatcgtcaaaatgattgttagtagtaactacaatgaaagcaggtcaactgtttttgggatccaggggatgggaggcatcggtaagacaacattagctcaaaagatatacaatgaacagaggataagggagaaattccaagttcatatatggttgtgcatttctcagaattacacagagaccagtttgttaaaacaggcaatcagaatggctggaggaatttgtgatcagctggagactaagactgagcttctaccgcttctagtggacactattagagggaagagtgtttttcttgtgctggatgatgtttggaaatctgatgtatggattgatcttcttcgtttgcctttcttgagaggtttgaattctcatatccttgtgacctcaagaaacctggatgttttggttgaaatgcatgcaacttatacccacaaggtaaacaaaatgaatgattgcgatggcctagaactgctgatgaagatgtcattagggccatacgagcaaagcagagaattcagtggtgttggatatcaaattgtcaaaaagtgtgatggccttcctcttgccatcaaagttgttgcaggtgttctatctactaaaagaacaagggcagaatgggagagtatccgagatagcaagtggtccattcatggacttcccagagaactaggaggccctctgtacttaagctacagcaacttaccccctgaacttaaacaatgctttctctggtgtgctttgttgccgtcaaattttgtgatacgtcgtgatgctgtcgcttactggtgggttgctgaaggtttcgtgacggaagtgcatgggtactcaatacatgaggttgctgaagagtactaccatgagctaatcagaaggaatcttctgcagccacgaccagagtttgtagacaaaggcgagtcaacaatgcatgatctattgaggtcacttggtcaatttttgacaaaggatcactccatattcatgaacatggaatatagcaaagccttaccaaatctacgccacttatgtatcagcaatgatgtagaagaaatacctgctatagaaaagcaaaagtgcttgaggagcctcctagtttttgataacaaaaacttcatgaaaattaataaggacattttcagagaactcaagcatatccgtgtcttagttctcagtggaacaagcatccaaatcataccagagtcagtgggaaacttcttgttactgaggcttctagatctaagctat</cdnaseq> |
| Protein Sequence |
<aaseq>MGTVLDALAWKFLEKLGQLIEDEVIMTLSVKRGIESLKKNLEFF NAVHEDAEALAMEDPGIDSWWKNMRDVMFDVDDIVDLFMVHSQKLLLPPRPVCCNQPL FSSFAKFSFDHMIAKRIDNINEKFEEIKMNKEMFGLERTNGQQIQITIVDRSQTSPVD ELEVVGEDIRRAIDDIVKMIVSSNYNESRSTVFGIQGMGGIGKTTLAQKIYNEQRIRE KFQVHIWLCISQNYTETSLLKQAIRMAGGICDQLETKTELLPLLVDTIRGKSVFLVLD DVWKSDVWIDLLRLPFLRGLNSHILVTSRNLDVLVEMHATYTHKVNKMNDCDGLELLM KMSLGPYEQSREFSGVGYQIVKKCDGLPLAIKVVAGVLSTKRTRAEWESIRDSKWSIH GLPRELGGPLYLSYSNLPPELKQCFLWCALLPSNFVIRRDAVAYWWVAEGFVTEVHGY SIHEVAEEYYHELIRRNLLQPRPEFVDKGESTMHDLLRSLGQFLTKDHSIFMNMEYSK ALPNLRHLCISNDVEEIPAIEKQKCLRSLLVFDNKNFMKINKDIFRELKHIRVLVLSG TSIQIIPESVGNFLLLRLLDLSY</aaseq> |
| Gene Sequence |
<dnaseqindica>1377..3143#gtgcggtggggggcatttcatcgaacaccattcgcgcatcgctctccccgagcgaaccgcattcgttacgttacgttacgtgcgagatgaatcaacttgtcaggtacaaacacaaccggagaatttgcttttgtttatactggagttatacgatgtgatcctgatccaggctcagttcgacctagcccctgcttatctttgcttgtgggtcgttgtcgccgtctttggttacgctaggagaagcatctctctttcttgcgtaggtaatcaactatcttaatttttcttttgtgtcttgattatgtgcaacaccgagtgatgcgaatgggatgtgttcctttcgatgttttttctatataagctctgaaacttggacttttgcaacaaatggttcgggtgcagatgagctgtttgacgaaatgcccaggagattcctgcgtgcgttgcatgcccagcggcggtttgactctatttttcctttagtatggtgtctgctctctggtgatctaatgtaccattttctcttaaccttgttttacccaatcttaatgcaaagatgcataaagagaactctgcatattcctgttttctcttaaccttgtttcagagaaccttgttttctctgaactctgcaaaagattttctgcatattcctgaaaaaaggagaactctgctccggtgcttttaactagacttataaaggctttggcataggattcctgtattggttgatgcaaaatctgctggtaacagtcagctaaattcgcttaaaaagtacacttctttgggtcttcttgctagtgcaggtagagaagcaccatggccttcctggtttcttaggtggtaaacaggcaaagaaagtaaagcaccaagtggcgccattgctgcaatgaaatcaaattattattagcaagtggatgaaaggaaaagaatacacagcctggaagagctttcaacttgaatccccttgcaattgtgtaacactacttgtccttttcacattgcatcatcgttgaaacatttggattttaatacaaaaatcattgtgggtagattttgcctcaaaaagtgctttcatactgttttaattttgtcaggtttttcagacgttttgcaatagagaatgtcaatgtccattgtgacaaaggcagttggtggcaagaaagggaggagaatctataacagctctcttctgcaatctgcattgccctctctgttctcatcaggttttagccacactgcttcaatatctctttccatcttccgtatttaagtgatcggcactcagcagctctgtgagatatctcttctgggatctgcagtttcaagcatctcccataggagagatccagtgggaatccgtaggttctagcactatgggcacagttttggatgctctcgcttggaaattcttggaaaagctgggtcaacttattgaggatgaggttatcatgacattaagtgtgaaaaggggtattgagagcctgaagaaaaatctggaattcttcaacgctgttcatgaggatgctgaggctctggccatggaggatccagggatagattcatggtggaagaacatgagagatgttatgtttgatgtcgatgacatcgtagatcttttcatggttcattcacagaagctcttgctgccaccaaggccggtatgttgcaatcagcccttgttctctagctttgcaaagttttcatttgatcacatgattgccaaaagaattgataatataaatgaaaagtttgaagaaattaaaatgaacaaagagatgtttggcttggagagaaccaacgggcaacaaatccagataacaattgttgacagaagtcagacatctcctgtagatgaacttgaggtggttggagaagatatcagaagggctattgatgacatcgtcaaaatgattgttagtagtaactacaatgaaagcaggtcaactgtttttgggatccaggggatgggaggcatcggtaagacaacattagctcaaaagatatacaatgaacagaggataagggagaaattccaagttcatatatggttgtgcatttctcagaattacacagagaccagtttgttaaaacaggcaatcagaatggctggaggaatttgtgatcagctggagactaagactgagcttctaccgcttctagtggacactattagagggaagagtgtttttcttgtgctggatgatgtttggaaatctgatgtatggattgatcttcttcgtttgcctttcttgagaggtttgaattctcatatccttgtgacctcaagaaacctggatgttttggttgaaatgcatgcaacttatacccacaaggtaaacaaaatgaatgattgcgatggcctagaactgctgatgaagatgtcattagggccatacgagcaaagcagagaattcagtggtgttggatatcaaattgtcaaaaagtgtgatggccttcctcttgccatcaaagttgttgcaggtgttctatctactaaaagaacaagggcagaatgggagagtatccgagatagcaagtggtccattcatggacttcccagagaactaggaggccctctgtacttaagctacagcaacttaccccctgaacttaaacaatgctttctctggtgtgctttgttgccgtcaaattttgtgatacgtcgtgatgctgtcgcttactggtgggttgctgaaggtttcgtgacggaagtgcatgggtactcaatacatgaggttgctgaagagtactaccatgagctaatcagaaggaatcttctgcagccacgaccagagtttgtagacaaaggcgagtcaacaatgcatgatctattgaggtcacttggtcaatttttgacaaaggatcactccatattcatgaacatggaatatagcaaagccttaccaaatctacgccacttatgtatcagcaatgatgtagaagaaatacctgctatagaaaagcaaaagtgcttgaggagcctcctagtttttgataacaaaaacttcatgaaaattaataaggacattttcagagaactcaagcatatccgtgtcttagttctcagtggaacaagcatccaaatcataccagagtcagtgggaaacttcttgttactgaggcttctagatctaagctat</dnaseqindica> |
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