Difference between revisions of "Os09g0328951"
Liuxiaorong (talk | contribs) (Pi56(t)/qBR9.1 is a rice blast resistance gene, located on chromosome 9.) |
Liuxiaorong (talk | contribs) (The major quantitative trait locus Pi56(t) is a rice blast resistance gene, located on a 69.1 kb region of chromosome 9, which is from "sanhuangzhan No 2 (SHZ-2) " indica varieties and controls PO6-6-resistant strains) |
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| − | + | Summary: | |
| + | The major quantitative trait locus Pi56(t) is a rice blast resistance gene, located on a 69.1 kb region of chromosome 9, which is from "sanhuangzhan No 2 (SHZ-2) " indica varieties and controls PO6-6-resistant strains | ||
| + | |||
| + | Function: | ||
| + | The major quantitative trait locus Pi56(t) confers broad-spectrum resistance to rice blast. Pi56(t) encodes an NBS-LRR protein composed of 743 amino acids.LRR may be used as the receptor binding inducer, to start signal transmission in a host cell, thereby starting the plant disease resistance. | ||
| + | |||
| + | Evolution: | ||
| + | rice blast resistance gene has a family. Using QTL methods have reported of rice blast resistance gene nearly 70. Most of these genes were located on chromosome 6,11,12. NBS structure is relatively conservative, but LRR has larger changes between different resistance genes. | ||
| + | |||
| + | Expression: | ||
| + | The expression tapy of Pi56(t) is inducible expression. | ||
| + | |||
| + | Reference: | ||
| + | 1. Yan Liu;Bin Liu;Xiaoyuan Zhu;Jianyuan Yang;Alicia Bordeos;Guoliang Wang;Jan E. Leach;Hei Leung;Yan Liu | ||
| + | Fine-mapping and molecular marker development for Pi56(t), a NBS-LRR gene conferring broad-spectrum resistance to Magnaporthe oryzae in rice | ||
| + | Theoretical and Applied Genetics, 2013, 126(4): 985-998 | ||
| + | 2. Yan Liu;Xiao Yuan Zhu;Shaohong Zhang;Marichu Bernardo;Jeremy Edwards;David W. Galbraith;Jan Leach;Gaisheng Zhang;Bin Liu;Hei Leung | ||
| + | Dissecting quantitative resistance against blast disease using heterogeneous inbred family lines in rice | ||
| + | Theoretical and Applied Genetics, 2011, 122(2): 341-353 | ||
| + | |||
| + | |||
| + | Name: Os09g0328951 | ||
| + | Type: gene | ||
| + | Position: chr09:10397132..10398697 (+ strand) | ||
| + | Length: 1566 bp | ||
| + | ID_converter: Convert RAP Os ID to MSU's LOC_Os ID | ||
| + | Transcript_variants: Os09t0328951-00 | ||
| + | >Os09g0328951 class=Sequence position=chr09:10397132..10398697 (+ strand) | ||
| + | ATGGAAACTT GGCTTGCTGC AGGGAATGAT GAATTGTGGG AACTAGTGGA AAGACATTCC CTTGAAAGGG AAGTGTTCTC | ||
| + | ATCATTCAAG CAGATATATT ACGACATGTC CTTGATGTTA AAATCATGTT TCTTATACCT GTCAGTCTTT CCGAGAGGAT | ||
| + | CCGACATAGA TAAGGATGAA CTCATTCGTC AATGGATTGC ATTAGACTTG ATTAACTCTA GCAGACATGG GACCTTACCT | ||
| + | GCATTTCTAC ACGGGGAGAT GTTCATTGAA GCACTTGTAT CAAGATCATT TCTTCAAATT GTCAACACAT CCTTAGTAAG | ||
| + | TTGTTAAATA TTTTTTCGGT TATAATATTT TCCTGTTTTT TCATGAACAA TAAGCTTGGT TAGCTTGTTA CTGTTGCAAT | ||
| + | ATTGGTGGTT GCATGTTGTG CTTACACTAA CAAGAAAACA TATTTTTTGC AAGTAATGTA TATTCTTTTA TTTTTCACAT | ||
| + | CTTCTGAGTT TTTGGTCAGG CTTATTACAT GTTTAAGTGT TCAGTTTGGA TTGTTATTAT GATAAATTGT TGGCCAACAT | ||
| + | CTAATATGAA TTCGATACTG ACAGATAGTT CTGATAAACT GACAGTCTTC TTTTTTAGGT TACCGAGAAG AAATGCAAGA | ||
| + | ACCCTCCTCC TACCATTCTT AAAGTGCACG GCTTGGTTTA CGATTTTTTG AGATATATTG CAGCGGATGA TATATTTACT | ||
| + | TTGGATTATG CGAAATCACC AAATATTTCT GTAAGAAATC AACCTTTCCG GTATGCAGTA TTAACTAATT ACAGTTGGCA | ||
| + | AGCTAAAATG CACGAAGATT TCATAGCCAA GGCCAAGGCG GCAAAAGCAG CAATTTTCAG AAATTGTGAG GCAACAATGC | ||
| + | CTATTGCGGA TATATTCCCA ATACTAAGAT ACTCACGTCT CTTGGATCTC AGTGGATGCC TCTTTCAAGA ATTACCTACT | ||
| + | TCTATCGGTG AATTGAAGCA TTTGAGATAT CTCAACGTTT CGTTCTTCAG GATAACTGAA CTTCCCAACG AAATGTGCTG | ||
| + | CTTGCGAAGC CTTGAGTATT TGGATCTCTC AAAAACATGC ATCGAAGTTC TGCCCTTGTT TGTTGGAGCT TTTGATAAGC | ||
| + | TGAAATACTT CAATCTACAT GGATGTGGCA AACTCAAGAA CTTGCCCCAA AACATTGGTG ATCTCAAGAG GCTAGAACAC | ||
| + | CTCAGCCTGT CATGCTGTCC TGAAATCCGT GAGTTACCTT CATCTATCTC CGGTCTTGAT GAACTTAAGT TGCTCAACCT | ||
| + | ATCAAGTTGC ACCAAGCTTG AGCTACTGCC TCATCAGTTC GGTAACTTAT CCTGTTTAGA GAGTCTTGAG ATGGCAGGAT | ||
| + | GCTGTAGTCT TCAGAGATTA CCAGAATCGT TTGGTGGCCT CTCTAAGCTC TGTTCTTTAA GCTTAGCAAG TTGTTCTAGC | ||
| + | CTTCAACGAT TGCCAGATTA TATTGGTGAG TTGTGTAGTT TAGAGTACTT GAACATTTCA CATGCTCACC TTGAGCTACC | ||
| + | GGATTCACTG ACCAAGCTCC AGAGCCTCCA CATAGTGAAC TCATAG | ||
Revision as of 13:20, 26 May 2014
Summary: The major quantitative trait locus Pi56(t) is a rice blast resistance gene, located on a 69.1 kb region of chromosome 9, which is from "sanhuangzhan No 2 (SHZ-2) " indica varieties and controls PO6-6-resistant strains
Function: The major quantitative trait locus Pi56(t) confers broad-spectrum resistance to rice blast. Pi56(t) encodes an NBS-LRR protein composed of 743 amino acids.LRR may be used as the receptor binding inducer, to start signal transmission in a host cell, thereby starting the plant disease resistance.
Evolution: rice blast resistance gene has a family. Using QTL methods have reported of rice blast resistance gene nearly 70. Most of these genes were located on chromosome 6,11,12. NBS structure is relatively conservative, but LRR has larger changes between different resistance genes.
Expression: The expression tapy of Pi56(t) is inducible expression.
Reference: 1. Yan Liu;Bin Liu;Xiaoyuan Zhu;Jianyuan Yang;Alicia Bordeos;Guoliang Wang;Jan E. Leach;Hei Leung;Yan Liu
Fine-mapping and molecular marker development for Pi56(t), a NBS-LRR gene conferring broad-spectrum resistance to Magnaporthe oryzae in rice Theoretical and Applied Genetics, 2013, 126(4): 985-998
2. Yan Liu;Xiao Yuan Zhu;Shaohong Zhang;Marichu Bernardo;Jeremy Edwards;David W. Galbraith;Jan Leach;Gaisheng Zhang;Bin Liu;Hei Leung
Dissecting quantitative resistance against blast disease using heterogeneous inbred family lines in rice Theoretical and Applied Genetics, 2011, 122(2): 341-353
Name: Os09g0328951
Type: gene
Position: chr09:10397132..10398697 (+ strand)
Length: 1566 bp
ID_converter: Convert RAP Os ID to MSU's LOC_Os ID
Transcript_variants: Os09t0328951-00
>Os09g0328951 class=Sequence position=chr09:10397132..10398697 (+ strand)
ATGGAAACTT GGCTTGCTGC AGGGAATGAT GAATTGTGGG AACTAGTGGA AAGACATTCC CTTGAAAGGG AAGTGTTCTC
ATCATTCAAG CAGATATATT ACGACATGTC CTTGATGTTA AAATCATGTT TCTTATACCT GTCAGTCTTT CCGAGAGGAT
CCGACATAGA TAAGGATGAA CTCATTCGTC AATGGATTGC ATTAGACTTG ATTAACTCTA GCAGACATGG GACCTTACCT
GCATTTCTAC ACGGGGAGAT GTTCATTGAA GCACTTGTAT CAAGATCATT TCTTCAAATT GTCAACACAT CCTTAGTAAG
TTGTTAAATA TTTTTTCGGT TATAATATTT TCCTGTTTTT TCATGAACAA TAAGCTTGGT TAGCTTGTTA CTGTTGCAAT
ATTGGTGGTT GCATGTTGTG CTTACACTAA CAAGAAAACA TATTTTTTGC AAGTAATGTA TATTCTTTTA TTTTTCACAT
CTTCTGAGTT TTTGGTCAGG CTTATTACAT GTTTAAGTGT TCAGTTTGGA TTGTTATTAT GATAAATTGT TGGCCAACAT
CTAATATGAA TTCGATACTG ACAGATAGTT CTGATAAACT GACAGTCTTC TTTTTTAGGT TACCGAGAAG AAATGCAAGA
ACCCTCCTCC TACCATTCTT AAAGTGCACG GCTTGGTTTA CGATTTTTTG AGATATATTG CAGCGGATGA TATATTTACT
TTGGATTATG CGAAATCACC AAATATTTCT GTAAGAAATC AACCTTTCCG GTATGCAGTA TTAACTAATT ACAGTTGGCA
AGCTAAAATG CACGAAGATT TCATAGCCAA GGCCAAGGCG GCAAAAGCAG CAATTTTCAG AAATTGTGAG GCAACAATGC
CTATTGCGGA TATATTCCCA ATACTAAGAT ACTCACGTCT CTTGGATCTC AGTGGATGCC TCTTTCAAGA ATTACCTACT
TCTATCGGTG AATTGAAGCA TTTGAGATAT CTCAACGTTT CGTTCTTCAG GATAACTGAA CTTCCCAACG AAATGTGCTG
CTTGCGAAGC CTTGAGTATT TGGATCTCTC AAAAACATGC ATCGAAGTTC TGCCCTTGTT TGTTGGAGCT TTTGATAAGC
TGAAATACTT CAATCTACAT GGATGTGGCA AACTCAAGAA CTTGCCCCAA AACATTGGTG ATCTCAAGAG GCTAGAACAC
CTCAGCCTGT CATGCTGTCC TGAAATCCGT GAGTTACCTT CATCTATCTC CGGTCTTGAT GAACTTAAGT TGCTCAACCT
ATCAAGTTGC ACCAAGCTTG AGCTACTGCC TCATCAGTTC GGTAACTTAT CCTGTTTAGA GAGTCTTGAG ATGGCAGGAT
GCTGTAGTCT TCAGAGATTA CCAGAATCGT TTGGTGGCCT CTCTAAGCTC TGTTCTTTAA GCTTAGCAAG TTGTTCTAGC
CTTCAACGAT TGCCAGATTA TATTGGTGAG TTGTGTAGTT TAGAGTACTT GAACATTTCA CATGCTCACC TTGAGCTACC
GGATTCACTG ACCAAGCTCC AGAGCCTCCA CATAGTGAAC TCATAG
