Difference between revisions of "Chalk5"
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===Function=== | ===Function=== | ||
Chalk5, influences grain chalkiness, which also affects head rice yield and many other quality traits. Chalk5 encodes a vacuolar H+-translocating pyrophosphatase (V-PPase) with inorganic pyrophosphate (PPi) hydrolysis and H+-translocation activity. | Chalk5, influences grain chalkiness, which also affects head rice yield and many other quality traits. Chalk5 encodes a vacuolar H+-translocating pyrophosphatase (V-PPase) with inorganic pyrophosphate (PPi) hydrolysis and H+-translocation activity. | ||
| − | [[File: | + | [[File:Ng.2923-F2.jpg]] |
===Expression=== | ===Expression=== | ||
Revision as of 02:09, 28 May 2014
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Contents
Annotated Information
Function
Chalk5, influences grain chalkiness, which also affects head rice yield and many other quality traits. Chalk5 encodes a vacuolar H+-translocating pyrophosphatase (V-PPase) with inorganic pyrophosphate (PPi) hydrolysis and H+-translocation activity.
Expression
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Evolution
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Labs working on this gene
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References
Li Yibo,Fan Chuchuan,Xing Yongzhong etc.Chalk5 encodes a vacuolar H+-translocating pyrophosphatase influencing grain chalkiness in rice,Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved. 2014/04/46(4);1061-4036
Structured Information
| Gene Name |
BGIOSGA000079 |
|---|---|
| Description |
Putative uncharacterized protein |
| Definition |
Oryza sativa Indica Group BGIOSGA000079, complete gene. |
| LocusTag |
OS01G0958100 |
| Ensembl Transcript ID |
BGIOSGA000079-TA |
| Ensembl Protein ID |
BGIOSGA000079-PA |
| Length |
2622 |
| Source |
Oryza sativa Indica Group ORGANISM Oryza sativa Indica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 1:46289509..46292130 |
| Sequence Coding Region |
46291834..46292130,46291618..46291722,46291453..46291526,46291309..46291367,46290712..46290749 |
| Genome Context |
<gbrowseImage1> name=IndicaChromosome01:46289509..46292130 source=RiceIndica01 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=IndicaChromosome01:46289509..46292130 source=RiceIndica01 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>ATGGCGGCACACTCCCACGTCATCCCCTTCCTCTCCCCGGCGGCGACGTCCGCGCGCTGCTCCCCCTACGGCCACCGCCGCCGCGGCCGCGCGGGGCTCCTGCGGTGCGCGGCGGCGGCGGGGCAGGCGGGGTTCTTCACCCGCCTGGGACGCCTCATCCAGGAGAAGGCCAAGAGCGACGTCGAGAAGCTCTTCTCCGGCTTCTCCAAGACCCGCGAGAGCCTCTCCGTCGTCGACGAGCTCCTCACCTACTGGAACCTCGCCGACACCGACCGCGTCCTCGACGAGCTCGAGGAGGCTCTGCTGGTGTCGGATTTTGGCCCCAAGATTTCGTTCCGGATCGTGGACACTCTACGCGAGGAAATCCGCGATGGCAAGCTCAAGTCTGGGGCTGAGATAAAGGAAGCGCTGAAAAGGTGTATTCTTGAACTGCTGACGAGCAAAGGCGGCAATCCGGAGCTGCAGCTCGGTTTCAGAAAGCCGGCAGTTATCATGATTGTGGGAGTGAATGGAGGTGGAAAGACTACCTCATTAGGAAAACTTGCTTACAGATTCAAGAATGAAGGAGTGAAGGTATTGATGGCAGCAGGTGATACCTTCAGAGCAGCAGCTCGTGACCAGCTAGAAGTTTGGGCAGAGAGAACAGGTTCAGAGATTGTTATCGATAATGATAAGAAAGCAAAACCTGCATCAGTTCTCTCGCAGGCAGTGAAGCGCGGGAAGCGTGAAGGATTTGATCTTGTTCTTTGCGACACGTCAGGACGACTTCATACAAATTATGGTCTGATGGAAGAATTGGTTTCCTGCAAGAAAGTCATAGCTAAAGCCCTTCCGGGTGCTCCTAATGAGATCTTGCTGGTTCTGGATGGCACGACTGGCTTGAATATGCTACAACAAGCGAGGGAGTTCAATGATGTTGTTGGAGTCACAGGATTCGTCCTAACAAAGCTTGATGGAACTGCTCGTGGTGGTTGTGTGGTTAGCGTTGTAGATGAACTTGGAATTCCAGTAAAGTTTATTGGTGTTGGTGAAGGGATGGAGGATCTTCAGCCTTTTGATGCTGAGGCATTTGTTGAAGCCATTTTTCCTTGA</cdnaseq> |
| Protein Sequence |
<aaseq>MAAHSHVIPFLSPAATSARCSPYGHRRRGRAGLLRCAAAAGQAGFFTRLGRLIQEKAKSDVEKLFSGFSKTRESLSVVDELLTYWNLADTDRVLDELEEALLVSDFGPKISFRIVDTLREEIRDGKLKSGAEIKEALKRCILELLTSKGGNPELQLGFRKPAVIMIVGVNGGGKTTSLGKLAYRFKNEGVKVLMAAGDTFRAAARDQLEVWAERTGSEIVIDNDKKAKPASVLSQAVKRGKREGFDLVLCDTSGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAREFNDVVGVTGFVLTKLDGTARGGCVVSVVDELGIPVKFIGVGEGMEDLQPFDAEAFVEAIFP</aaseq> |
| Gene Sequence |
<dnaseqindica>1..297#409..513#605..678#764..822#1382..1419#1578..1698#1793..1861#1956..2038#2202..2270#2360..2422#2509..2622#ATGGCGGCACACTCCCACGTCATCCCCTTCCTCTCCCCGGCGGCGACGTCCGCGCGCTGCTCCCCCTACGGCCACCGCCGCCGCGGCCGCGCGGGGCTCCTGCGGTGCGCGGCGGCGGCGGGGCAGGCGGGGTTCTTCACCCGCCTGGGACGCCTCATCCAGGAGAAGGCCAAGAGCGACGTCGAGAAGCTCTTCTCCGGCTTCTCCAAGACCCGCGAGAGCCTCTCCGTCGTCGACGAGCTCCTCACCTACTGGAACCTCGCCGACACCGACCGCGTCCTCGACGAGCTCGAGGAGGCGCGTCCCCTGCTCCACTGCTCTGCATGCTGTTCTCTCCTTCTTCACTGTTCGGCGCTGCTTCTGTCTTCGTTTTTTTTGAATGTTTCCTGCTTGGTCTCGTGCACGCAGGCTCTGCTGGTGTCGGATTTTGGCCCCAAGATTTCGTTCCGGATCGTGGACACTCTACGCGAGGAAATCCGCGATGGCAAGCTCAAGTCTGGGGCTGAGATAAAGGTCATTTCAGTTTCCTCTTAGTGTACATTGACATCGGCATTGTGATTGGTCTGATGATTCATTTTGTCATCTGTGGTGGTTGATTGTGCAGGAAGCGCTGAAAAGGTGTATTCTTGAACTGCTGACGAGCAAAGGCGGCAATCCGGAGCTGCAGCTCGGTTTCAGGTTCTGCTTTCTCCTGAATTCCTGCTCAGTGCCATTTGTTGCTTGCTGTTTGTAATTTGAGCAATGTTGTTCATCGTTATGGCAGAAAGCCGGCAGTTATCATGATTGTGGGAGTGAATGGAGGTGGAAAGACTACCTCATTAGGTACTCCTCTTGCATGCTTGGCTTTGTTAAGCTTAGATGTTTTTGTTCCATTCTGATAGATGGTCAATAAACGGTAACACACTCTCCTATGGTCCTACCCTAGTACCCTACTATATGGACAATTGACATTATGATGATGTTCTAAAGGCACAACACATGGTTATATAGGCACGCAAGTGCATTTGTGAAGGAAAAGATATTTGGTTATAAAAGCACAATACTGTAATTAGGCCATCACAAGATTATCTCTTATACACCAATGTACTAGTTACTCGAAGTGAATTTATCACGCCTATGTAAGGTATTTTCAGCTCAATGCAAAACTACTTGCATATTAAGCTTGGATTGTGGCATAGCATTGGATTAAGCTTCTGCAGGTTATCTTGTCGCTTTAAAGCTAATATGGTACCTAGATAGTAAGGAGCTCCTCAATATGCAGTTCTGGTTCGGGCATTTTCTACCATCTGCATCTGGCATCACTATTTAGTTTGGAACGTTTTATACAGCATGATGCTTTGAAGTGGAAGATTGATCTTACTCCTTTTTTATGTATTTGTAGGAAAACTTGCTTACAGATTCAAGAATGAAGGAGTGAAGGTGAGGCTATTTTCTAGACATACCCTGGTTTATAGGCTAGATGCATGGGAATTAAATTCAGCTATGTACATATTGCCTCACCACATTCTCTGAACATGTAATATTGTACAATAGATCAAAATAATGAGTTCATGTTCATGCTTTCAACAATAATATAGGTATTGATGGCAGCAGGTGATACCTTCAGAGCAGCAGCTCGTGACCAGCTAGAAGTTTGGGCAGAGAGAACAGGTTCAGAGATTGTTATCGATAATGATAAGAAAGCAAAACCTGCATCAGGTATGATTTTTTGATCTGCCAAGCATTGTGATCACACTCTGTTCTCATAAGGAGGTTAGCTTCTATGTTTCATCTAATTTGACTTGCTTGGTAGTTCTCTCGCAGGCAGTGAAGCGCGGGAAGCGTGAAGGATTTGATCTTGTTCTTTGCGACACGTCAGGACGTATGATTATTTTAGTGACTGAGAGCAGAATATGCATATGTTTGGTGATTTGCTGATTGGTTGAAATGACTTTGTTTCAGCACTTATTTTTCAGGACTTCATACAAATTATGGTCTGATGGAAGAATTGGTTTCCTGCAAGAAAGTCATAGCTAAAGCCCTTCCGGGTGCTCCTAATGTATGCTGTGTTTACATGCAAAGGACTTGATTTTGTGTTGATTGGATCATTTTGGCATGTGCAGTACTTTTGAGGGCAAGCTTAGAGAAGCACGGTTATGATTCTAATACTTCATAGCGCTCTCATTGTTATTAACTACTAGCATATATTCCTTGCTTAACAGGAGATCTTGCTGGTTCTGGATGGCACGACTGGCTTGAATATGCTACAACAAGCGAGGGAGTTCAATGATGTAATCACCATTTCCTGGTTATTTTGGTACTCCTGATTTTTCTTTTTTTTTTCATCAAGATATAACGAACTCTGTTGGCTTAATGCCAGGTTGTTGGAGTCACAGGATTCGTCCTAACAAAGCTTGATGGAACTGCTCGTGGTGGTTGTGTGGTATACACATATTCCTTGCCATATGCAGTTTATAAACAACAACATTTTAGTGGTTCACCTGAATTTTGTTGTTTGATCTATTGCAGGTTAGCGTTGTAGATGAACTTGGAATTCCAGTAAAGTTTATTGGTGTTGGTGAAGGGATGGAGGATCTTCAGCCTTTTGATGCTGAGGCATTTGTTGAAGCCATTTTTCCTTGA</dnaseqindica> |
| External Link(s) |
