Difference between revisions of "ORF1"
| Line 3: | Line 3: | ||
==Annotated Information== | ==Annotated Information== | ||
===Function=== | ===Function=== | ||
| − | + | ||
| − | |||
===Expression=== | ===Expression=== | ||
| − | + | ||
===Evolution=== | ===Evolution=== | ||
| Line 19: | Line 18: | ||
==References== | ==References== | ||
| − | + | 1 | |
| + | AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., | ||
| + | Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., | ||
| + | Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J., | ||
| + | Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S., | ||
| + | Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., | ||
| + | Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., | ||
| + | Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., | ||
| + | Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., | ||
| + | Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K., | ||
| + | Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N., | ||
| + | Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., | ||
| + | Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., | ||
| + | Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y. | ||
| + | and Yasunishi,A. | ||
| + | CONSRTM Rice Full-Length cDNA Consortium; National Institute of | ||
| + | Agrobiological Sciences Rice Full-Length cDNA Project Team; | ||
| + | Foundation of Advancement of International Science Genome | ||
| + | Sequencing & Analysis Group; RIKEN | ||
| + | TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from | ||
| + | japonica rice | ||
| + | JOURNAL Science 301 (5631), 376-379 (2003) | ||
| + | PUBMED 12869764 | ||
| + | REMARK Erratum:[Science. 2003 Sep;301(5641):1849] | ||
| + | REFERENCE 2 | ||
| + | AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., | ||
| + | Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., | ||
| + | Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., | ||
| + | Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., | ||
| + | Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., | ||
| + | Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., | ||
| + | Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., | ||
| + | Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., | ||
| + | Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., | ||
| + | Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., | ||
| + | Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., | ||
| + | Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., | ||
| + | Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., | ||
| + | Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., | ||
| + | Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., | ||
| + | Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., | ||
| + | Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., | ||
| + | Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., | ||
| + | Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., | ||
| + | Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., | ||
| + | Yokomizo,S. and Yoshimura,A. | ||
| + | TITLE Collection, mapping, and annotation of 28K full-length cDNA clones | ||
| + | from japonica rice | ||
| + | JOURNAL Unpublished | ||
| + | REFERENCE 3 (bases 1 to 3449) | ||
| + | AUTHORS Kikuchi,S. | ||
| + | TITLE Direct Submission | ||
| + | JOURNAL Submitted (31-JAN-2003) Contact:Shoshi Kikuchi National Institute | ||
| + | of Agrobiological Sciences, Department of Molecular Genetics, Head | ||
| + | of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki | ||
| + | 305-8602, Japan | ||
==Structured Information== | ==Structured Information== | ||
{{IndicaGene| | {{IndicaGene| | ||
GeneName = ORF1| | GeneName = ORF1| | ||
| − | Description = | + | Description = This clone is one of the 32K full-length cDNA clones from japonica rice. Protein of unknown function DUF625 domain containing protein;(Rice Genome Annotation Project) expressed protein;mapping to R05-TIGRv4S1-000179F (Chr.5: short arm=3301101,long arm=3312326, direction=forward) for TIGR Pseudomol ver4| |
| − | Definition = Oryza sativa Japonica Group | + | Definition = Oryza sativa Japonica Group cDNA clone:001-133-D06, full insert sequence.| |
| − | + | ACCESSION AK119449 | |
| − | + | VERSION AK119449.1 GI:37989072 | |
| − | + | KEYWORDS FLI_CDNA; oligo capping. | |
| − | Length = | + | Length = 3449 bp| |
| − | Source = Oryza sativa | + | Source = Oryza sativa Japonica Group (Japanese rice) |
| + | 1..3449 organism="Oryza sativa Japonica Group" mol_type="mRNA"cultivar="Nipponbare"db_xref="taxon:39947"clone="001-133-D06" | ||
| − | ORGANISM | + | ORGANISM Oryza sativa Japonica Group |
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; | ||
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP | ||
| Line 50: | Line 105: | ||
preset=GeneLocation | preset=GeneLocation | ||
</gbrowseImage2>| | </gbrowseImage2>| | ||
| + | Link=http://cdna01.dna.affrc.go.jp/cDNA/ | ||
CDNA = <cdnaseq>ATGGCGGCACACTCCCACGTCATCCCCTTCCTCTCCCCGGCGGCGACGTCCGCGCGCTGCTCCCCCTACGGCCACCGCCGCCGCGGCCGCGCGGGGCTCCTGCGGTGCGCGGCGGCGGCGGGGCAGGCGGGGTTCTTCACCCGCCTGGGACGCCTCATCCAGGAGAAGGCCAAGAGCGACGTCGAGAAGCTCTTCTCCGGCTTCTCCAAGACCCGCGAGAGCCTCTCCGTCGTCGACGAGCTCCTCACCTACTGGAACCTCGCCGACACCGACCGCGTCCTCGACGAGCTCGAGGAGGCTCTGCTGGTGTCGGATTTTGGCCCCAAGATTTCGTTCCGGATCGTGGACACTCTACGCGAGGAAATCCGCGATGGCAAGCTCAAGTCTGGGGCTGAGATAAAGGAAGCGCTGAAAAGGTGTATTCTTGAACTGCTGACGAGCAAAGGCGGCAATCCGGAGCTGCAGCTCGGTTTCAGAAAGCCGGCAGTTATCATGATTGTGGGAGTGAATGGAGGTGGAAAGACTACCTCATTAGGAAAACTTGCTTACAGATTCAAGAATGAAGGAGTGAAGGTATTGATGGCAGCAGGTGATACCTTCAGAGCAGCAGCTCGTGACCAGCTAGAAGTTTGGGCAGAGAGAACAGGTTCAGAGATTGTTATCGATAATGATAAGAAAGCAAAACCTGCATCAGTTCTCTCGCAGGCAGTGAAGCGCGGGAAGCGTGAAGGATTTGATCTTGTTCTTTGCGACACGTCAGGACGACTTCATACAAATTATGGTCTGATGGAAGAATTGGTTTCCTGCAAGAAAGTCATAGCTAAAGCCCTTCCGGGTGCTCCTAATGAGATCTTGCTGGTTCTGGATGGCACGACTGGCTTGAATATGCTACAACAAGCGAGGGAGTTCAATGATGTTGTTGGAGTCACAGGATTCGTCCTAACAAAGCTTGATGGAACTGCTCGTGGTGGTTGTGTGGTTAGCGTTGTAGATGAACTTGGAATTCCAGTAAAGTTTATTGGTGTTGGTGAAGGGATGGAGGATCTTCAGCCTTTTGATGCTGAGGCATTTGTTGAAGCCATTTTTCCTTGA</cdnaseq>| | CDNA = <cdnaseq>ATGGCGGCACACTCCCACGTCATCCCCTTCCTCTCCCCGGCGGCGACGTCCGCGCGCTGCTCCCCCTACGGCCACCGCCGCCGCGGCCGCGCGGGGCTCCTGCGGTGCGCGGCGGCGGCGGGGCAGGCGGGGTTCTTCACCCGCCTGGGACGCCTCATCCAGGAGAAGGCCAAGAGCGACGTCGAGAAGCTCTTCTCCGGCTTCTCCAAGACCCGCGAGAGCCTCTCCGTCGTCGACGAGCTCCTCACCTACTGGAACCTCGCCGACACCGACCGCGTCCTCGACGAGCTCGAGGAGGCTCTGCTGGTGTCGGATTTTGGCCCCAAGATTTCGTTCCGGATCGTGGACACTCTACGCGAGGAAATCCGCGATGGCAAGCTCAAGTCTGGGGCTGAGATAAAGGAAGCGCTGAAAAGGTGTATTCTTGAACTGCTGACGAGCAAAGGCGGCAATCCGGAGCTGCAGCTCGGTTTCAGAAAGCCGGCAGTTATCATGATTGTGGGAGTGAATGGAGGTGGAAAGACTACCTCATTAGGAAAACTTGCTTACAGATTCAAGAATGAAGGAGTGAAGGTATTGATGGCAGCAGGTGATACCTTCAGAGCAGCAGCTCGTGACCAGCTAGAAGTTTGGGCAGAGAGAACAGGTTCAGAGATTGTTATCGATAATGATAAGAAAGCAAAACCTGCATCAGTTCTCTCGCAGGCAGTGAAGCGCGGGAAGCGTGAAGGATTTGATCTTGTTCTTTGCGACACGTCAGGACGACTTCATACAAATTATGGTCTGATGGAAGAATTGGTTTCCTGCAAGAAAGTCATAGCTAAAGCCCTTCCGGGTGCTCCTAATGAGATCTTGCTGGTTCTGGATGGCACGACTGGCTTGAATATGCTACAACAAGCGAGGGAGTTCAATGATGTTGTTGGAGTCACAGGATTCGTCCTAACAAAGCTTGATGGAACTGCTCGTGGTGGTTGTGTGGTTAGCGTTGTAGATGAACTTGGAATTCCAGTAAAGTTTATTGGTGTTGGTGAAGGGATGGAGGATCTTCAGCCTTTTGATGCTGAGGCATTTGTTGAAGCCATTTTTCCTTGA</cdnaseq>| | ||
AA = <aaseq>MAAHSHVIPFLSPAATSARCSPYGHRRRGRAGLLRCAAAAGQAGFFTRLGRLIQEKAKSDVEKLFSGFSKTRESLSVVDELLTYWNLADTDRVLDELEEALLVSDFGPKISFRIVDTLREEIRDGKLKSGAEIKEALKRCILELLTSKGGNPELQLGFRKPAVIMIVGVNGGGKTTSLGKLAYRFKNEGVKVLMAAGDTFRAAARDQLEVWAERTGSEIVIDNDKKAKPASVLSQAVKRGKREGFDLVLCDTSGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAREFNDVVGVTGFVLTKLDGTARGGCVVSVVDELGIPVKFIGVGEGMEDLQPFDAEAFVEAIFP</aaseq>| | AA = <aaseq>MAAHSHVIPFLSPAATSARCSPYGHRRRGRAGLLRCAAAAGQAGFFTRLGRLIQEKAKSDVEKLFSGFSKTRESLSVVDELLTYWNLADTDRVLDELEEALLVSDFGPKISFRIVDTLREEIRDGKLKSGAEIKEALKRCILELLTSKGGNPELQLGFRKPAVIMIVGVNGGGKTTSLGKLAYRFKNEGVKVLMAAGDTFRAAARDQLEVWAERTGSEIVIDNDKKAKPASVLSQAVKRGKREGFDLVLCDTSGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAREFNDVVGVTGFVLTKLDGTARGGCVVSVVDELGIPVKFIGVGEGMEDLQPFDAEAFVEAIFP</aaseq>| | ||
DNA = <dnaseqindica> | DNA = <dnaseqindica> | ||
| − | + | 1 agggaggaga gctcgctcgc tcgctcgctc gtgctcgtca atggcgggta gggtttcgcc | |
| − | + | 61 gctgccctcc tcctcctccc gctgctagac ctcgccctcg ccctcgccct cgccctcgcc | |
| − | + | 121 gccgccgccc cccgatcccc gagtccgccc cgatttccat ccttccccgg cggtgaggca | |
| − | + | 181 ggcctagggc gggcgacgat gggggaggag gagcaggggc cccggaggaa gcaggcgggg | |
| − | + | 241 ccggacgacg cggtgcagat cagcatgcag cgagtcaaag tgtaccgatt gactgatgat | |
| − | + | 301 gggaagtggg atgatcaggg aacagggcat gttaccatcg actacattga gggatcaaga | |
| − | + | 361 gaaattgctc tgactgttgt ggatgaagag gatagtgaca cgctactgct tcatcacatt | |
| − | + | 421 acatctgatg atatatacag gaaacaagaa gaaacaatca tctcatggag ggatcctgaa | |
| − | + | 481 aaggcactag agttagcatt gagttttcga gaagctgctg gatgttcata catatgggag | |
| − | + | 541 agtgtgtgta ccatacaacg aaatttacaa tttaatgtcc ttgatgttca agaagccgct | |
| − | + | 601 ccacccgcag catttgaatc tttagaagcc tctagaaatc caccttttca tggtagatga | |
| − | + | 661 gtccttaagt tctaccagca gagaattaaa gaaacttccc cctcttgatt tgtccagtct | |
| − | + | 721 atcttccatc ttaaagacta tattggagtg cagcatgaca gagcggatgc gtgtttctgt | |
| − | + | 781 tgcagagtta atattacaat atcatgattt cttcccccag ctagtgaatc tttttagaac | |
| − | + | 841 gtgtgagagt tcaggaaaca tgggtgcact ccacatgatc tttagattag taaagggaat | |
| − | + | 901 catattgttg aacagttctg cgatatatga caagattttc tctgatgatt ttattcttga | |
| − | + | 961 gataataggc gcacttgaat atgatccaga ggctcgcact gtgcaaaatc atcgcacttt | |
| − | + | 1021 cctgaaggag catgtagttt tcaaggaggc tatacccatt aaaaatgctt ctgtggtttc | |
| − | + | 1081 aaagattcat caaacataca gaataggcta tataaaggat gttatattac caagagtact | |
| − | + | 1141 tgatgattct accatggcaa gcattgctgc aatcattcat gcgaacaatg ctgctgttgt | |
| − | + | 1201 ttgtttactc aaggacgatg cttcttttgt aaaagaactg tttgctaaga tgagatcttc | |
| − | + | 1261 gaatatttct gctgaatcaa aacgcgaact ggtcctgttt ttgcttgagt tttgtactct | |
| − | + | 1321 cactaaaagt ttgcaggctg ttcagcaatt acgtctatct agggatcttg ctagtgaagg | |
| − | + | 1381 tgtgtttgac atcatgtctg atgtgttgca gagtcaggat aaagtgctcg tctcagctgg | |
| − | + | 1441 gacagacatc cttgtatatt ttcttaatca agatcctaac ttactgagat catatattgc | |
| − | + | 1501 tcgtcaagaa aattctcaag aaggaaattc acttcttggt cttctggttc aaggcatggt | |
| − | + | 1561 aactgacttt ggtgagggaa tgcactgtca atttctggaa attttgaaga ttctgatgga | |
| − | + | 1621 tggatttgct acaaatatgc ctacaaacta tagaggagtt attgatgttt ttcatgaaaa | |
| − | + | 1681 gcatcttgat aagttgattg atgtaatagc attggcttcc tcccctatgg acattaccca | |
| − | + | 1741 atcaacatct agtccagttg gtgtgggtac aagagttgaa aaccattctg tgaagactga | |
| − | + | 1801 aatactgtct aacatctgcg agcttttatg cttttgtgta gttcatcacc cctacaagat | |
| − | + | 1861 caaggtcaac tttttaagaa gcaattccgt ggagaaaatc cttactttaa cccataggag | |
| − | + | 1921 agagaaggtt ttggtcgtgg cagccgtccg attcatgagg actgttattg ctagaaatga | |
| − | + | 1981 tgagcttctt cttagccatg ttatcaagtt caactcattg aaaccaatta tcgaggtatt | |
| + | 2041 tgttgaaaat ggggataggt acaacatgct acattctgtt gtccttgaac tgttggaata | ||
| + | 2101 catacgaaag gtaacctagc gggagttatt tgccaattgt tataatgcta cataatgtgc | ||
| + | 2161 tgtcagttga tgcattattt gtacaggaaa atctcaattc acttgtgata catgttacca | ||
| + | 2221 aatccttttg ggaccaactt gtgaggttcg aaaaactagg gagcattcag gcctttaaac | ||
| + | 2281 tcaagtatca acagttaatg gagagtggtg aaacaacaca aagtattagt ctagttgaca | ||
| + | 2341 tgagaaagaa gccagaagaa agaggtctcg acaaagaaga ggaggactat ttcaacaagg | ||
| + | 2401 gcagtgatga ggaagattct gataaacaga catcatatgc acagaaggaa tctttggata | ||
| + | 2461 agttacccaa gggaagtgac atccgtcata tccctgcaag gtacattatc tcatcttcta | ||
| + | 2521 taacttgcga taacttcctg ccaactcata ttgaagattt atttactggc ttcttcttct | ||
| + | 2581 ttatattcat aataacttgt tacgttttac attctgtgcg cacattatgc aatttctgga | ||
| + | 2641 ctctaaaaca tacttcagtt ccagtgttta gcagatcttt tgttttttca ggtctaaatc | ||
| + | 2701 tggtgggctt gtggattatg acgacgatga tgagggttac aacccacctc ccaaaagggc | ||
| + | 2761 tgttaaagct gatgaggatg atgaggcctt agtcataaag cgtaatccag tggatgacaa | ||
| + | 2821 acaagctgat gggaggtctc ccaaaaaacc aaagatggaa cccagattta tctgctcaaa | ||
| + | 2881 gattgtcgct gcggctagtg tggcaggcag acgctcgaat ttggcagata aacagggtcc | ||
| + | 2941 ccatccacct tcctcaagca cgaaaacttc tgaaggcaat ggtgatgtag gggaggaagg | ||
| + | 3001 cccaggttct cagaatctac aacatgaccc aggaagcttg gattccactc atcaaaatgg | ||
| + | 3061 agatgactgt accaaagatg cagggaactc gccttccgag atgactgtaa atacatcaaa | ||
| + | 3121 agcaactgat tcagagcctt attcagtgag atgacaataa atattttttt tcctctattg | ||
| + | 3181 gcttcaagtc gattgctttt ccttgcgacg aaaaggaatt gcttcacatt tggctccgaa | ||
| + | 3241 gaaggtcgtt gaatccatag cattctgacc ctcgagccag caagcatggt cggaggtgag | ||
| + | 3301 atagttttgg tcaaagttgt atatctcaac cgcgatttcg gctcagctga acatgtaaat | ||
| + | 3361 tgacactcaa agagaagaat accaagctga gaaccaacat gccatttggt gctgcactat | ||
| + | 3421 agacaaaaag gagagggtct tgctgtttt</dnaseqindica>| | ||
Revision as of 03:35, 29 May 2014
Please input one-sentence summary here.
Contents
Annotated Information
Function
Expression
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this gene
callus UVB iradiated callus, immid after treatment
References
1
AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J.,
Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S.,
Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T.,
Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A.,
Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J.,
Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R.,
Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K.,
Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N.,
Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H.,
Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y.
and Yasunishi,A.
CONSRTM Rice Full-Length cDNA Consortium; National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team;
Foundation of Advancement of International Science Genome
Sequencing & Analysis Group; RIKEN
TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from
japonica rice
JOURNAL Science 301 (5631), 376-379 (2003)
PUBMED 12869764
REMARK Erratum:[Science. 2003 Sep;301(5641):1849]
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M.,
Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M.,
Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M.,
Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A.,
Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J.,
Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3449)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) Contact:Shoshi Kikuchi National Institute
of Agrobiological Sciences, Department of Molecular Genetics, Head
of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki
305-8602, Japan
Structured Information
{{IndicaGene| GeneName = ORF1| Description = This clone is one of the 32K full-length cDNA clones from japonica rice. Protein of unknown function DUF625 domain containing protein;(Rice Genome Annotation Project) expressed protein;mapping to R05-TIGRv4S1-000179F (Chr.5: short arm=3301101,long arm=3312326, direction=forward) for TIGR Pseudomol ver4| Definition = Oryza sativa Japonica Group cDNA clone:001-133-D06, full insert sequence.| ACCESSION AK119449 VERSION AK119449.1 GI:37989072 KEYWORDS FLI_CDNA; oligo capping. Length = 3449 bp| Source = Oryza sativa Japonica Group (Japanese rice)
1..3449 organism="Oryza sativa Japonica Group" mol_type="mRNA"cultivar="Nipponbare"db_xref="taxon:39947"clone="001-133-D06"
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
Chromosome = Chromosome 5|
AP = Chromosome 5:46289509..46292130|
CDS = 46291834..46292130,46291618..46291722,46291453..46291526,46291309..46291367,46290712..46290749
,46290433..46290553,46290270..46290338,46290093..46290175,46289861..46289929
,46289709..46289771,46289509..46289622|
GCID =</Ng.2923-F1.jpg>
name=IndicaChromosome01:46289509..46292130
source=RiceIndica01
preset=GeneLocation
</gbrowseImage1>|
GSID = <gbrowseImage2>
name=IndicaChromosome01:46289509..46292130
source=RiceIndica01
preset=GeneLocation
</gbrowseImage2>|
Link=http://cdna01.dna.affrc.go.jp/cDNA/
CDNA = <cdnaseq>ATGGCGGCACACTCCCACGTCATCCCCTTCCTCTCCCCGGCGGCGACGTCCGCGCGCTGCTCCCCCTACGGCCACCGCCGCCGCGGCCGCGCGGGGCTCCTGCGGTGCGCGGCGGCGGCGGGGCAGGCGGGGTTCTTCACCCGCCTGGGACGCCTCATCCAGGAGAAGGCCAAGAGCGACGTCGAGAAGCTCTTCTCCGGCTTCTCCAAGACCCGCGAGAGCCTCTCCGTCGTCGACGAGCTCCTCACCTACTGGAACCTCGCCGACACCGACCGCGTCCTCGACGAGCTCGAGGAGGCTCTGCTGGTGTCGGATTTTGGCCCCAAGATTTCGTTCCGGATCGTGGACACTCTACGCGAGGAAATCCGCGATGGCAAGCTCAAGTCTGGGGCTGAGATAAAGGAAGCGCTGAAAAGGTGTATTCTTGAACTGCTGACGAGCAAAGGCGGCAATCCGGAGCTGCAGCTCGGTTTCAGAAAGCCGGCAGTTATCATGATTGTGGGAGTGAATGGAGGTGGAAAGACTACCTCATTAGGAAAACTTGCTTACAGATTCAAGAATGAAGGAGTGAAGGTATTGATGGCAGCAGGTGATACCTTCAGAGCAGCAGCTCGTGACCAGCTAGAAGTTTGGGCAGAGAGAACAGGTTCAGAGATTGTTATCGATAATGATAAGAAAGCAAAACCTGCATCAGTTCTCTCGCAGGCAGTGAAGCGCGGGAAGCGTGAAGGATTTGATCTTGTTCTTTGCGACACGTCAGGACGACTTCATACAAATTATGGTCTGATGGAAGAATTGGTTTCCTGCAAGAAAGTCATAGCTAAAGCCCTTCCGGGTGCTCCTAATGAGATCTTGCTGGTTCTGGATGGCACGACTGGCTTGAATATGCTACAACAAGCGAGGGAGTTCAATGATGTTGTTGGAGTCACAGGATTCGTCCTAACAAAGCTTGATGGAACTGCTCGTGGTGGTTGTGTGGTTAGCGTTGTAGATGAACTTGGAATTCCAGTAAAGTTTATTGGTGTTGGTGAAGGGATGGAGGATCTTCAGCCTTTTGATGCTGAGGCATTTGTTGAAGCCATTTTTCCTTGA</cdnaseq>|
AA = <aaseq>MAAHSHVIPFLSPAATSARCSPYGHRRRGRAGLLRCAAAAGQAGFFTRLGRLIQEKAKSDVEKLFSGFSKTRESLSVVDELLTYWNLADTDRVLDELEEALLVSDFGPKISFRIVDTLREEIRDGKLKSGAEIKEALKRCILELLTSKGGNPELQLGFRKPAVIMIVGVNGGGKTTSLGKLAYRFKNEGVKVLMAAGDTFRAAARDQLEVWAERTGSEIVIDNDKKAKPASVLSQAVKRGKREGFDLVLCDTSGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAREFNDVVGVTGFVLTKLDGTARGGCVVSVVDELGIPVKFIGVGEGMEDLQPFDAEAFVEAIFP</aaseq>|
DNA = <dnaseqindica>
1 agggaggaga gctcgctcgc tcgctcgctc gtgctcgtca atggcgggta gggtttcgcc
61 gctgccctcc tcctcctccc gctgctagac ctcgccctcg ccctcgccct cgccctcgcc
121 gccgccgccc cccgatcccc gagtccgccc cgatttccat ccttccccgg cggtgaggca
181 ggcctagggc gggcgacgat gggggaggag gagcaggggc cccggaggaa gcaggcgggg
241 ccggacgacg cggtgcagat cagcatgcag cgagtcaaag tgtaccgatt gactgatgat
301 gggaagtggg atgatcaggg aacagggcat gttaccatcg actacattga gggatcaaga
361 gaaattgctc tgactgttgt ggatgaagag gatagtgaca cgctactgct tcatcacatt
421 acatctgatg atatatacag gaaacaagaa gaaacaatca tctcatggag ggatcctgaa
481 aaggcactag agttagcatt gagttttcga gaagctgctg gatgttcata catatgggag
541 agtgtgtgta ccatacaacg aaatttacaa tttaatgtcc ttgatgttca agaagccgct
601 ccacccgcag catttgaatc tttagaagcc tctagaaatc caccttttca tggtagatga
661 gtccttaagt tctaccagca gagaattaaa gaaacttccc cctcttgatt tgtccagtct
721 atcttccatc ttaaagacta tattggagtg cagcatgaca gagcggatgc gtgtttctgt
781 tgcagagtta atattacaat atcatgattt cttcccccag ctagtgaatc tttttagaac
841 gtgtgagagt tcaggaaaca tgggtgcact ccacatgatc tttagattag taaagggaat
901 catattgttg aacagttctg cgatatatga caagattttc tctgatgatt ttattcttga
961 gataataggc gcacttgaat atgatccaga ggctcgcact gtgcaaaatc atcgcacttt
1021 cctgaaggag catgtagttt tcaaggaggc tatacccatt aaaaatgctt ctgtggtttc
1081 aaagattcat caaacataca gaataggcta tataaaggat gttatattac caagagtact
1141 tgatgattct accatggcaa gcattgctgc aatcattcat gcgaacaatg ctgctgttgt
1201 ttgtttactc aaggacgatg cttcttttgt aaaagaactg tttgctaaga tgagatcttc
1261 gaatatttct gctgaatcaa aacgcgaact ggtcctgttt ttgcttgagt tttgtactct
1321 cactaaaagt ttgcaggctg ttcagcaatt acgtctatct agggatcttg ctagtgaagg
1381 tgtgtttgac atcatgtctg atgtgttgca gagtcaggat aaagtgctcg tctcagctgg
1441 gacagacatc cttgtatatt ttcttaatca agatcctaac ttactgagat catatattgc
1501 tcgtcaagaa aattctcaag aaggaaattc acttcttggt cttctggttc aaggcatggt
1561 aactgacttt ggtgagggaa tgcactgtca atttctggaa attttgaaga ttctgatgga
1621 tggatttgct acaaatatgc ctacaaacta tagaggagtt attgatgttt ttcatgaaaa
1681 gcatcttgat aagttgattg atgtaatagc attggcttcc tcccctatgg acattaccca
1741 atcaacatct agtccagttg gtgtgggtac aagagttgaa aaccattctg tgaagactga
1801 aatactgtct aacatctgcg agcttttatg cttttgtgta gttcatcacc cctacaagat
1861 caaggtcaac tttttaagaa gcaattccgt ggagaaaatc cttactttaa cccataggag
1921 agagaaggtt ttggtcgtgg cagccgtccg attcatgagg actgttattg ctagaaatga
1981 tgagcttctt cttagccatg ttatcaagtt caactcattg aaaccaatta tcgaggtatt
2041 tgttgaaaat ggggataggt acaacatgct acattctgtt gtccttgaac tgttggaata
2101 catacgaaag gtaacctagc gggagttatt tgccaattgt tataatgcta cataatgtgc
2161 tgtcagttga tgcattattt gtacaggaaa atctcaattc acttgtgata catgttacca
2221 aatccttttg ggaccaactt gtgaggttcg aaaaactagg gagcattcag gcctttaaac
2281 tcaagtatca acagttaatg gagagtggtg aaacaacaca aagtattagt ctagttgaca
2341 tgagaaagaa gccagaagaa agaggtctcg acaaagaaga ggaggactat ttcaacaagg
2401 gcagtgatga ggaagattct gataaacaga catcatatgc acagaaggaa tctttggata
2461 agttacccaa gggaagtgac atccgtcata tccctgcaag gtacattatc tcatcttcta
2521 taacttgcga taacttcctg ccaactcata ttgaagattt atttactggc ttcttcttct
2581 ttatattcat aataacttgt tacgttttac attctgtgcg cacattatgc aatttctgga
2641 ctctaaaaca tacttcagtt ccagtgttta gcagatcttt tgttttttca ggtctaaatc
2701 tggtgggctt gtggattatg acgacgatga tgagggttac aacccacctc ccaaaagggc
2761 tgttaaagct gatgaggatg atgaggcctt agtcataaag cgtaatccag tggatgacaa
2821 acaagctgat gggaggtctc ccaaaaaacc aaagatggaa cccagattta tctgctcaaa
2881 gattgtcgct gcggctagtg tggcaggcag acgctcgaat ttggcagata aacagggtcc
2941 ccatccacct tcctcaagca cgaaaacttc tgaaggcaat ggtgatgtag gggaggaagg
3001 cccaggttct cagaatctac aacatgaccc aggaagcttg gattccactc atcaaaatgg
3061 agatgactgt accaaagatg cagggaactc gccttccgag atgactgtaa atacatcaaa
3121 agcaactgat tcagagcctt attcagtgag atgacaataa atattttttt tcctctattg
3181 gcttcaagtc gattgctttt ccttgcgacg aaaaggaatt gcttcacatt tggctccgaa
3241 gaaggtcgtt gaatccatag cattctgacc ctcgagccag caagcatggt cggaggtgag
3301 atagttttgg tcaaagttgt atatctcaac cgcgatttcg gctcagctga acatgtaaat
3361 tgacactcaa agagaagaat accaagctga gaaccaacat gccatttggt gctgcactat
3421 agacaaaaag gagagggtct tgctgtttt</dnaseqindica>|
