Difference between revisions of "Os04g0309600"
(→Function: The functionality of SUS5 and SUS6 remain unclear.) |
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===Function=== | ===Function=== | ||
Please input function information here. | Please input function information here. | ||
| + | The functionality of SUS5 and SUS6 remain unclear.The research shows that the transcripts of the two Rice Sus genes classified in the New Group, SUS5 and SUS6,exhi- | ||
| + | bited a similar expression pattern to each other, being detected in most of the tissues examined, except for leaf sheaths, but at much lower levels compared to ex- | ||
| + | pression levels of the other members of the rice Sus gene family. These results are similar to those observed for the members of the NG in Arabidopsis and L.japo- | ||
| + | nicus. It has been reported that the transcript levels of Arabidopsis SUS5 and 6 do not respond to either oxygen deficiency or cold stress. In contrast to this, in the current work the mRNA levels of SUS5 and 6 were found to be suppressed in response to submergence, which is the first report of Sus genes of the NG class respond- | ||
| + | ing to an environmental stress. However, the function of the NG class Sus proteins are still unclear. The existence of conserved NG Sus members in a range of higher plant species suggests that the members may have specific function(s).[1] | ||
===Expression=== | ===Expression=== | ||
Revision as of 08:31, 29 May 2014
Please input one-sentence summary here.
Contents
Annotated Information
Function
Please input function information here. The functionality of SUS5 and SUS6 remain unclear.The research shows that the transcripts of the two Rice Sus genes classified in the New Group, SUS5 and SUS6,exhi- bited a similar expression pattern to each other, being detected in most of the tissues examined, except for leaf sheaths, but at much lower levels compared to ex- pression levels of the other members of the rice Sus gene family. These results are similar to those observed for the members of the NG in Arabidopsis and L.japo- nicus. It has been reported that the transcript levels of Arabidopsis SUS5 and 6 do not respond to either oxygen deficiency or cold stress. In contrast to this, in the current work the mRNA levels of SUS5 and 6 were found to be suppressed in response to submergence, which is the first report of Sus genes of the NG class respond- ing to an environmental stress. However, the function of the NG class Sus proteins are still unclear. The existence of conserved NG Sus members in a range of higher plant species suggests that the members may have specific function(s).[1]
Expression
Please input expression information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this gene
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References
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Structured Information
| Gene Name |
Os04g0309600 |
|---|---|
| Description |
Similar to Sucrose synthase |
| Version |
NM_001058967.1 GI:115457663 GeneID:4335447 |
| Length |
5199 bp |
| Definition |
Oryza sativa Japonica Group Os04g0309600, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 4:14058311..14063509 |
| Sequence Coding Region |
14058386..14058486,14059040..14059172,14059265..14059419,14059549..14059741,14059829..14059947 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008397:14058311..14063509 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008397:14058311..14063509 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggcatccaagctgagtttcaagcgaatggacagcattgccgagacaatgccagatgccctacgacaaagccggtaccagatgaagagatgcttccaaaggtacgtatcaaagggtaagaggctcttgaagaaccagcagctcatggaagagctggaaaagtcactagatgacaaagttgagaaggagaagcttgtcgaaggctttctcggttacatcatttgttcgacacaggaagcagtagtactcccaccgtttgtggcattcgctgtcagaatgaatcctggtatctgggagtacgtcaaagttcactctgatgatctttctgtcgaaggaatcacaccgtcggagtatctcaagttcaaggagaccttatacgatgaaaaatgggccaaggatgacaactcactggaagttgatttcggtgcccttgacctctcaacaccccatttgacactgccctcgtcaatagggaatgggcttcagtttgtctccaaattcatgtcctcaaagctgggtggcaaacctgaaagcatgaagcctctgttggactatttacttaccttgaattaccgtggcgagaagttgatgattaatgacaccatcgacactgtgagcaagcttcagacagcactgctacttgcagaggttttcgttagtgggctgccaaaatacacgccttacttgaagtttgaacaaagatttcaggagtgggggttagagaggggatggggtgacactgcggagaggtgcaaagaaacactaaattgtctgtctgaagtgctacaggcaccagatcctacaaacatggagaagttcttcagcagggttccatccatattcaacattgtcatcttctctattcatggttacttcggccaagaaaaggttcttggattgccggataccggtggtcaggttgtctacatattggatcaagtcagagccatggaagaggagctgcttcaaagaatcaagcagcagggtctgcacgtaacaccgaaaattcttgtgcttacaagactgataccagatgccaaaggcacaaaatgcaatgtggagcttgaaccagttgaaaatacaaaatactcacatatactacgtgtgccattcaagactgaagatggcaaggatttgcgccagtgggtgtcccggtttgacatctatccttatctagagagatatgcgcaggactcttgtgccaaaattctcgacattttggagggcaaaccggacttgataattggcaactacaccgatggcaacttggtggcatccctcttgtctaacaaactatgtgtcactcagggaacaattgcacacgctctggagaagacaaagtacgaggattcagatgttaagtggagagagatggaccagaagtaccatttctcttgccaatttaccgccgatatgatttccatgaacaccagcgacttcatcatcactagcacttaccaagaaattgctgggagcaaagagaagcctggccaatatgagcaccactacgcattcacaatgccgggactatgccgctacgccacaggcattaatgtattcgacccaaagttcaacattgctgcacctggtgcagaccagtccatctacttccccttcacgcagaagcagaagcggctgacagatttacacccacagatagacgaactgctgtacagcaaggatgacactgatgaacacatagggtatctggcagacaggaacaaaccaatcatcttctcgatggcaaggcttgataaggtaaaaaacaagaagctgagggacctcgtcaatctcgtcgtcgtcgcggggctcctggatgcttcgcagtccaaggatcgagaggagatcgaggagataaacaagatgcacaacctgatggacaggtaccagctcaaaggacagatccgctggatcaaggcacagactgaccgtgtccgcaacggtgagctgtaccgttgcattgcagatacaaagggtgcatttgttcagcctgcactgtatgaagcattcgggctaacggtcatcgaggcgatgaactgcgggttgccaaccttcgcaacgaaccagggcggaccagctgagataatcatcgacggtgtctctggtttccacgtaaaccccatcaacgacagggaggcaggaatcaagattgcagatttcttccagaaatgcaaggaagacccaagttactggaacaaggtgtccactgctgggcttcagcggatctgcgagtgctacacatggaagatttatgcaactagagtgctaaacatgggatctacatattccttctggaagacactaaacaaggaggaaagacaagccaaacaacgttacctgcagatattctacaatgttcagtataggaacctggcaaaggctatggcaagagcaggggatcaacaggctcggcaaaccacaacaggcgtggcgcctagtgagatcgtagttagacccaaagaaagaaagccgcagactcggatgcaaaggatcttaaccaggttagccgggcagaagcctccagtttctgagtag</cdnaseq> |
| Protein Sequence |
<aaseq>MASKLSFKRMDSIAETMPDALRQSRYQMKRCFQRYVSKGKRLLK NQQLMEELEKSLDDKVEKEKLVEGFLGYIICSTQEAVVLPPFVAFAVRMNPGIWEYVK VHSDDLSVEGITPSEYLKFKETLYDEKWAKDDNSLEVDFGALDLSTPHLTLPSSIGNG LQFVSKFMSSKLGGKPESMKPLLDYLLTLNYRGEKLMINDTIDTVSKLQTALLLAEVF VSGLPKYTPYLKFEQRFQEWGLERGWGDTAERCKETLNCLSEVLQAPDPTNMEKFFSR VPSIFNIVIFSIHGYFGQEKVLGLPDTGGQVVYILDQVRAMEEELLQRIKQQGLHVTP KILVLTRLIPDAKGTKCNVELEPVENTKYSHILRVPFKTEDGKDLRQWVSRFDIYPYL ERYAQDSCAKILDILEGKPDLIIGNYTDGNLVASLLSNKLCVTQGTIAHALEKTKYED SDVKWREMDQKYHFSCQFTADMISMNTSDFIITSTYQEIAGSKEKPGQYEHHYAFTMP GLCRYATGINVFDPKFNIAAPGADQSIYFPFTQKQKRLTDLHPQIDELLYSKDDTDEH IGYLADRNKPIIFSMARLDKVKNKKLRDLVNLVVVAGLLDASQSKDREEIEEINKMHN LMDRYQLKGQIRWIKAQTDRVRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGL PTFATNQGGPAEIIIDGVSGFHVNPINDREAGIKIADFFQKCKEDPSYWNKVSTAGLQ RICECYTWKIYATRVLNMGSTYSFWKTLNKEERQAKQRYLQIFYNVQYRNLAKAMARA GDQQARQTTTGVAPSEIVVRPKERKPQTRMQRILTRLAGQKPPVSE</aaseq> |
| Gene Sequence |
<dnaseqindica>76..176#730..862#955..1109#1239..1431#1519..1637#1721..1937#2059..2154#2297..2473#2564..2680#2787..2953#3069..3293#3441..3504#3538..3762#4013..4257#4378..4516#4616..4705#4801..4826#4950..4995#ctttcctaattttctttccctgctttgttcttgtgccttctccatctacttccaagtctggtggtctcttttgccatggcatccaagctgagtttcaagcgaatggacagcattgccgagacaatgccagatgccctacgacaaagccggtaccagatgaagagatgcttccaaaggtaccgtaaattgtgaattaaatctttgatggaatgcatttcagttttttgtccgtgtcagccaaagcctggcagaggaattttattcctgtggttgagacttgcttttttattttcaatggaaataggttgatgcatcagtccataccagcatattctaataagggggtacttaattaatggcccttatgcatttccattataagaactaataagaaagaacattcatacatttgtaattaggacgatgctgcataaaaacatgtaaagcatatctaaattagctagagactaatcaaatagtgtaagcacctgaacgtagtctgaatcgatgttttaaaaagcggtaagcggtttggggtggccacctcaccttgtagtgcttatgtggcattatcggccgcttatgcgatataatcagctgcttacgcggcataggcaggacaaggttggtacacatgttcctcttgtatatggccttgtagaccctttttaaaacactggtttgaatatcttgcacatgattctcaagtctaggataaaaatgttctaggtacgtatcaaagggtaagaggctcttgaagaaccagcagctcatggaagagctggaaaagtcactagatgacaaagttgagaaggagaagcttgtcgaaggctttctcggttacatcatttgttcgacacaggtgatttcactttaaaatcataatctgttttcagacaaagtaaacggtgataaactggagctcattacattaagcaacgattttgtttgcaggaagcagtagtactcccaccgtttgtggcattcgctgtcagaatgaatcctggtatctgggagtacgtcaaagttcactctgatgatctttctgtcgaaggaatcacaccgtcggagtatctcaagttcaaggagaccttatacgatgaaaaatggtatgcatatccatgatccactaatccagtacgtagtagctaatgcgaacatttccatatacagattgaagaagaacaggagcctgaaacttgaaaaaaaaatggtcgatctgaccatgtgcatttcagggccaaggatgacaactcactggaagttgatttcggtgcccttgacctctcaacaccccatttgacactgccctcgtcaatagggaatgggcttcagtttgtctccaaattcatgtcctcaaagctgggtggcaaacctgaaagcatgaagcctctgttggactatttacttaccttgaattaccgtggcgaggtaccgcgagatcattcagctgtgccattattatcaggtggccaacgtaccccgctgaatgatactttttatcttatgatcatgtagaagttgatgattaatgacaccatcgacactgtgagcaagcttcagacagcactgctacttgcagaggttttcgttagtgggctgccaaaatacacgccttacttgaagtttgaacaaaggtgaagtactttaatctgaagttgtagatagacaaaaaaaattgtaatcatgcttaagttttctctattatgtgttcttgcagatttcaggagtgggggttagagaggggatggggtgacactgcggagaggtgcaaagaaacactaaattgtctgtctgaagtgctacaggcaccagatcctacaaacatggagaagttcttcagcagggttccatccatattcaacattgtcatcttctctattcatggttacttcggccaagaaaaggttcttggattgccggataccggtggtcaggtacccaacttaccggttttctggaatctctcgcgcataatcattataactcttaaaaatatggtcacaacttaattatcggttaacaaaactctaaagaatggtttcgtgaaatatataggttgtctacatattggatcaagtcagagccatggaagaggagctgcttcaaagaatcaagcagcagggtctgcacgtaacaccgaaaattcttgtggtaaatttcattgatttcacgatatatatattcctgtacaatgaaatatagtgaatgacgaataggtatatatatataaatgagatgatatgaatgacgaatagattagctaaaccagtgggcactatatatattcctgcagcttacaagactgataccagatgccaaaggcacaaaatgcaatgtggagcttgaaccagttgaaaatacaaaatactcacatatactacgtgtgccattcaagactgaagatggcaaggatttgcgccagtgggtgtcccggtttgacatctatccttatctagagagatatgcgcaggtttgtcagctatgaattactatgagttactgataccctttgcgcgggcctgtgatctttatagtaagtttccatccaacgtaatttcaggactcttgtgccaaaattctcgacattttggagggcaaaccggacttgataattggcaactacaccgatggcaacttggtggcatccctcttgtctaacaaactatgtgtcactcaggtgaaaccggcttgtcaaatggctgcacgtacggtggttatccctttttaggaccaacgttaccatgatttggtatgacatgaaaaatgcatgatcttgatgacagggaacaattgcacacgctctggagaagacaaagtacgaggattcagatgttaagtggagagagatggaccagaagtaccatttctcttgccaatttaccgccgatatgatttccatgaacaccagcgacttcatcatcactagcacttaccaagaaattgctgggaggtcggtagctaaggctgaaatagtctctctataaatctagtgcttcaaggacactcaaattattaagtgttaattgcttagcctagaaattaacaagatcgaacatctgatgcagcaaagagaagcctggccaatatgagcaccactacgcattcacaatgccgggactatgccgctacgccacaggcattaatgtattcgacccaaagttcaacattgctgcacctggtgcagaccagtccatctacttccccttcacgcagaagcagaagcggctgacagatttacacccacagatagacgaactgctgtacagcaaggatgacactgatgaacacatgtaagctactacccggacggccaggctccttggaaacgtacctagctacaaattaacttctcttttactgttagatcagatcagacaacttaagttggctaattaagtgctaattgctgctcttcacctttttttaatttaaaccagagggtatctggcagacaggaacaaaccaatcatcttctcgatggcaaggcttgataaggtaaaaaacataactgggcttgtggagtggtatggccagaacaagaagctgagggacctcgtcaatctcgtcgtcgtcgcggggctcctggatgcttcgcagtccaaggatcgagaggagatcgaggagataaacaagatgcacaacctgatggacaggtaccagctcaaaggacagatccgctggatcaaggcacagactgaccgtgtccgcaacggtgagctgtaccgttgcattgcagatacaaagggtgcatttgttcaggtacataccagggttttaaatctcccgctatagctgtttgagaagggttttagctatttgctctaatgtacaatttagccgctatagctttatttagcccgctaatactatttgggaagctaaccgctaaatgtcttagcccgctatttaaaacattggtacttacacaacagaagtagtaacagtttaattaattggatcaacagaagtaactcaactctaaccttgaccttgcattcgttgactgcagcctgcactgtatgaagcattcgggctaacggtcatcgaggcgatgaactgcgggttgccaaccttcgcaacgaaccagggcggaccagctgagataatcatcgacggtgtctctggtttccacgtaaaccccatcaacgacagggaggcaggaatcaagattgcagatttcttccagaaatgcaaggaagacccaagttactggaacaaggtgtccactgctgggcttcagcggatctgcgagtggtgagtgagggtcctatatccttgcatgcgtcctgttctttttttttttgtttttgtttttgtgcacaacttagatcaatcctcctatatatatggcactaactaaatccatgatggcagctacacatggaagatttatgcaactagagtgctaaacatgggatctacatattccttctggaagacactaaacaaggaggaaagacaagccaaacaacgttacctgcagatattctacaatgttcagtataggaacctggttagtatgaatatatacatgcatcaatctgagtagtatagtatattctttatcgaagggatgtcagtctgatcaagtgtacaatgtctaatatcacaggcaaaggctatggcaagagcaggggatcaacaggctcggcaaaccacaacaggcgtggcgcctagtgagatcgtagttagacccaaagaaaggcaagtgtgcccgctattacgaaatttactgaagaaagaccgggcaagcaactgactgacccgttaatttgttgtttggaatttggatgctgcagaaagccgcagactcggatgcaaaggtgaatgcatgcgtcttcttatttttcgcaatatctctatcgatttagtacttaattaattagctgtgaagaaatgaacaaaataactaatccacttgaatgctctgctccgtgtgtgctcaggatcttaaccaggttagccgggcagaagcctccagtttctgagtagagagcatcttccgaccaagacaacaccgaaaccagcccacatcgcagctcaatttattccattgataccgatgtatgaaatactaactactacttgcgtgagatttgtgtacaatgtgtaatcatatatatggtgtgtttattattgattggcaatatgtacatacgattgtttattgatttacaatgcaacatcctttcaagc</dnaseqindica> 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