Difference between revisions of "Os09g0395300"
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| − | + | The rice ''SHALLOT-LIKE1'' ('' SLL1'') gene, a member of KANADI family, is a key gene controlling rice leaf rolling. | |
==Annotated Information== | ==Annotated Information== | ||
===Function=== | ===Function=== | ||
| − | + | ''sll1'', a rice mutant with shallot-like Leaves, displays abnormal sclerenchymatous cell development in the abaxial cell layers, altered mesophyll cell distribution, increased amounts of chlorophyll, and enhanced photosynthesis (Fig. 1&2). | |
===Expression=== | ===Expression=== | ||
| Line 14: | Line 14: | ||
==Labs working on this gene== | ==Labs working on this gene== | ||
| − | + | *State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou 310006, Zhejiang, China | |
| + | *National Key Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200032, China | ||
==References== | ==References== | ||
Revision as of 09:56, 30 May 2014
The rice SHALLOT-LIKE1 ( SLL1) gene, a member of KANADI family, is a key gene controlling rice leaf rolling.
Contents
Annotated Information
Function
sll1, a rice mutant with shallot-like Leaves, displays abnormal sclerenchymatous cell development in the abaxial cell layers, altered mesophyll cell distribution, increased amounts of chlorophyll, and enhanced photosynthesis (Fig. 1&2).
Expression
Please input expression information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this gene
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou 310006, Zhejiang, China
- National Key Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200032, China
References
Please input cited references here.
Structured Information
| Gene Name |
Os09g0395300 |
|---|---|
| Description |
Similar to CDPK substrate protein 1 |
| Version |
NM_001069632.1 GI:115479006 GeneID:4346973 |
| Length |
7672 bp |
| Definition |
Oryza sativa Japonica Group Os09g0395300, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 9:14411926..14419597 |
| Sequence Coding Region |
14411926..14412128,14413047..14413888,14413990..14414066,14414656..14414701,14414841..14415084 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008402:14411926..14419597 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008402:14411926..14419597 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggcaatggtgcgggagctcgagttgatgacgagctggagcaacagcatggggcgacaccgctacccaacgcgcatcctcgtcgattccttcgggcataagtgcagtgcctctgacaagggtgtgtggacctcctgcagcattcgcgcacccttgcaaggacgcggctccttccgacgtggcgcgaatattcgctttgggagcttgccgagcagcgcggcggtggcgacgtcggggggagggcgtggcggcggcggggtggtggtgggaggaggaggaggggacccgtggcggaggctggatgggtccacggcgtcgacggagttgtcgctgtcgccgccgccggcgcaggcggcgggtgggggaggtggtggtggtggagcggacgcgctgccgtggcggcaccgaccttcgccgccgtcgtcggcggtggccaccacgtctgccgccgccgcggcggcgctgatggcgccgatgatgctgcagccgctcgacgccggcggcggcgcgtcggcgccgccgccgccgatccgcgggatacctatctacaacggccccggcgggttcccgttcctgcagccgtcgcccaccgccggcgacgtcggccaccaccaccaccaccaccccaagatgggattctacagctcgtaccaccacccatccacgtggccctccacgtcgccgtccccgctcgcggcgccgccgggcgccgcgtcgtcgccgctcgaccccacggcggcgttcctctcctccccccaccaccggatgctgtccgccgcctcggggaggctcaacggcatgctctccgtctccgacaccctccgcagctacggcgtccccggcgccgccgcccccggcgtcatcggcggcgcgcaccaccaccaccaccacctccacggcggccagccgttcgtcggcgccctcgcgtcccgcttcatgcccaagctccccgccaagcgcagcatgcgcgcgccgcgcatgcgctggacgagcaccctccacgcccgcttcgtccacgccgtcgagctcctcggcggccacgagagggcgacgcccaagtcggtgctggagctcatggacgtcaaggatctgacgctagcgcatgtcaagagccacctccagatgtatcgcaccgtgaagagcactgacaagcctgcagcctcttcagggccggcggacggcggctccggcgacgaggagttcgccggcggcgggcaggcggcgtcgggcggcggcgacagcatgtgcctgaggggtggcggcggcggcggggtggccgcggcggcgttcgcggagcacggccggtcggcgtcggagggcgccgccagctcggtcggcggcggcggcggcggcgacatggaccagtcgtcggccggcaacaccagcaccaccaggtggagcaactcctcaagggacccatggctgtcgtccaattcttgcaacatggacgcccatcgctccgtaggattgtcttctcctattgaggttcttgcacttcctttagcctcattgatcatgtcagatactgcctacctgttcttttccagcaaccatggccggtgtgaaccggcctctcttgaccagaaactagcagatatctga</cdnaseq> |
| Protein Sequence |
<aaseq>MAMVRELELMTSWSNSMGRHRYPTRILVDSFGHKCSASDKGVWT SCSIRAPLQGRGSFRRGANIRFGSLPSSAAVATSGGGRGGGGVVVGGGGGDPWRRLDG STASTELSLSPPPAQAAGGGGGGGGADALPWRHRPSPPSSAVATTSAAAAAALMAPMM LQPLDAGGGASAPPPPIRGIPIYNGPGGFPFLQPSPTAGDVGHHHHHHPKMGFYSSYH HPSTWPSTSPSPLAAPPGAASSPLDPTAAFLSSPHHRMLSAASGRLNGMLSVSDTLRS YGVPGAAAPGVIGGAHHHHHHLHGGQPFVGALASRFMPKLPAKRSMRAPRMRWTSTLH ARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKSTDKPAASSGPA DGGSGDEEFAGGGQAASGGGDSMCLRGGGGGGVAAAAFAEHGRSASEGAASSVGGGGG GDMDQSSAGNTSTTRWSNSSRDPWLSSNSCNMDAHRSVGLSSPIEVLALPLASLIMSD TAYLFFSSNHGRCEPASLDQKLADI</aaseq> |
| Gene Sequence |
<dnaseqindica>1..203#1122..1963#2065..2141#2731..2776#2916..3159#6515..6587#7556..7672#atggcaatggtgcgggagctcgagttgatgacgagctggagcaacagcatggggcgacaccgctacccaacgcgcatcctcgtcgattccttcgggcataagtgcagtgcctctgacaagggtgtgtggacctcctgcagcattcgcgcacccttgcaaggacgcggctccttccgacgtggcgcgaatattcgctttgggaggtatgagactacgctccatggtggagcgttgggcgtgaccttagtgtgcgcatatgtaagctgtatgcgtacgtataaatgttgagcttgcagtacatgtatacttgtttttttcttcttttttatgaggtcctttaattccattgtctgtattatttatgctagtatggaggatgatggtggcagtgacataaagtatacaaaaagcatagtatagtatacgtatggaaacaaaagcatgctacctttgactccacttgcattgcctgctaactgccattatttaaggaatacatggttgaatgcctgcctaaacatcaagataacctcacattctcctctctctctctcctaccttgcaattaagggtagcagcagtactctcctcactgctggctgactgctcccattttctctctctactctctctctctctctctcctctattccttttatacttgttgttggtagctaggagtatagcaggacagcacaaggaaccaattcatgcatatatccctggtgtctctcatgcatgttagtgtgaagaaagaagaagcttgagagagaagagagagttagagagagaaagtagagtgtttgtagagagagaaagtggtgtgtgtactagtagtaactccaagccagtgctagagacagagatacaaaaaggagacatcatccttctcttggccaaagcaagcaaccaagcaaagcttcctcttcttctccaagaactccaagaaccttctccttcatcttctccaccatgattccttccatcgcatgagctccatctccggcgtgtcgatcgagatcaccgttgctgctgccgaggtggagaaggaggtgtttgatcgatcggtcgatggaggcgagctcggcggcgacgccaccggacctgtcgctgcacatcagcttgccgagcagcgcggcggtggcgacgtcggggggagggcgtggcggcggcggggtggtggtgggaggaggaggaggggacccgtggcggaggctggatgggtccacggcgtcgacggagttgtcgctgtcgccgccgccggcgcaggcggcgggtgggggaggtggtggtggtggagcggacgcgctgccgtggcggcaccgaccttcgccgccgtcgtcggcggtggccaccacgtctgccgccgccgcggcggcgctgatggcgccgatgatgctgcagccgctcgacgccggcggcggcgcgtcggcgccgccgccgccgatccgcgggatacctatctacaacggccccggcgggttcccgttcctgcagccgtcgcccaccgccggcgacgtcggccaccaccaccaccaccaccccaagatgggattctacagctcgtaccaccacccatccacgtggccctccacgtcgccgtccccgctcgcggcgccgccgggcgccgcgtcgtcgccgctcgaccccacggcggcgttcctctcctccccccaccaccggatgctgtccgccgcctcggggaggctcaacggcatgctctccgtctccgacaccctccgcagctacggcgtccccggcgccgccgcccccggcgtcatcggcggcgcgcaccaccaccaccaccacctccacggcggccagccgttcgtcggcgccctcgcgtcccgcttcatgcccaagctccccgccaagcgcagcatgcgcgcgccgcgcatgcgctggacgagcaccctccacgcccgcttcgtccacgccgtcgagctcctcggcggccacgagagtacgcccccgccatcatcgtcgtcgtcctcctcctccttctcaccaccatcatcaacgagctcgatcaatctgatgagaatccaatcttgttcttggcaggggcgacgcccaagtcggtgctggagctcatggacgtcaaggatctgacgctagcgcatgtcaagagccacctccaggtatcccgccattgccgaccaattctcacagctcgatcgatcgatcaaacaccactcaccactgcaccatctctctctttctctctctcgatttcgattccattcagcttctgttcttgatcatcttgtttgggtgagacaaagatgccaatgcagtaactcctgagttagtgaagaaactgccattcttgggagcagagagagagagtgtgtgtgtgacatgtttggggatgtgtgtgcaagagagaagagagagagagaggggaaaaaagttgccatcattacacaataatgcattgcatctgcatctgtgctactagctccttccttagctctagtcatactagcgtatatgtgcacggcccaaagcactctcacacacaaacacaagagagagagagagagagagaagaagaagatgagagatgagagagagtaggacatattttgtgtgtgtttctttgctgcttgtcttttgcaatggcttcaacctcctggtttcattttgatctcacaaaaaatgtgtgtgtgtgtgtaaatatatatattgatcttctttttgttggacttttgtgttttattactgcagatgtatcgcaccgtgaagagcactgacaagcctgcagcctcttcaggtgattttttttaccatggcagctactagtagtagtagtagtagctaatttagctaagctccattttgcttttctttttttttggcgttgtgcattgcgttttacattacattgttgctatggtttttttgacgtgtagggccggcggacggcggctccggcgacgaggagttcgccggcggcgggcaggcggcgtcgggcggcggcgacagcatgtgcctgaggggtggcggcggcggcggggtggccgcggcggcgttcgcggagcacggccggtcggcgtcggagggcgccgccagctcggtcggcggcggcggcggcggcgacatggaccagtcgtcggccggcaacaccagcaccaccaggtggagcaactcctcaaggtacacacatggcagagttgcatttcaagtctttcagattaattatatatctacattgttatgccatctttaattaattaaaaatgaaattaatcaatcagaatgtcatgagatgatgatgatgatgataataatactaggataggaagaggatgatatgatggatgggtgtgctatgtgtgtttttaagtgtgttttagcttagaaccaaaggcaacaccaacaaactttggcatgcattgatgatgtatctaaatatgagttagtgacatgcaaaattaacctgccaagtacaacctctatttattaattcccaaaaaaatctcatggaggagaagggagagagagagatagtagtaatgtgtggtgatgcatggctaaaaaagcttagcaaaagaatgttttgggggcacacacacacacacctggagagggagttgcctatgtttaggtggccaatgttgttatgtcacacaaaagaccaaaaagtcacacaccccatggcttggcctcctcctccccccttgacctgtgcagttagctaggcttcttctcttctctccctctgtgtttggtttttgtggagctaaaaacattttaaaaatcttgcaaacattgtgtgtaaaaataggttcttgggctctgcccattgtcctctagcttctctcaaatctctctctctctctctctctctctctctctctttctcaaacctagggaggggagggttactcaggcagggctccattatcatttcttatcaatgcatggctctgattccagggggatggggctttgacctgacatgccctattgcctaggaatatgtaaccaaggacttgctgcattcttggttctttctccctctctcaccagtctcttcaatgcccttttcttccacctcttgggcaattattagcatggatggagctcaccttttcactctaccctctagctgtgattaaatcattgactaatcctaattcataaatataagggattcaactatgtaactagatgtactagatcctagtattactagtgtgttttgattctgttaggaggagtgattagcgtttgtcgtaagtactagtattaaactataggggattagtgtagatcatttttttaaaaattagtgagtgtgcttgggcagattttactccagccattggcgtgaaaactttgatctttgggcagcttggaagcaagtacagttcaacctgtccttggctgcattcgctgctttttctttctcaggactcactgcaactttcttgccatccccaacacctccctttcggtcgtgtttgatcagttgcattgctggtttcttcgccgctttaatttctccatctttcttctgttccttattggctaagtaaaaaatcattctcagcaatcaagttttgaaattcaaattagcttcaggttttatctatctaataattctctgactagttctctttctttcaagacctgttcttgttcagaactcttatgcagttgagagttcagttgttcatggaagtaatggcaatgcctggtctagtctttgagcagtatcctccttatgctcttgattttccttcactttagccgtttcagtcaaactttggggacaaattaaagtcagctggtcaagtgcatacataccacgtcatattttttagatgaatccattgtagtattaaatactagtgacaaaaaaatataactaaatggcattaaattgcaaccttcttccccaaaataattgggcacaactaccttgcttgcatatgctttatagtactcctacttattacttccttgaatccatgaggattccaggaatttggtcaggtcaaatgtccaggaggaattaggctatctttttttatcttcttctttttcttctaggtagtaggatcgttgtgcacatataaacaaaacaaaatagaaatttaagaggaaaccctcccaaaaaaaatacgactatcaattatgagtgattttacagttcttgaggaggtacaatgatacattttctattttaaaattcagtaactttgatactatgaggtacagaaatttgcacaaaaaaaatttggtacctctcaagtacttaaaatatcttatcaattatatttcagcaatgttgtcgttgctcgagttgtgcaaaaacatttctgatgaacaagtggagatgtatgcatatttagagagggaaacacatgcattttttaatatacattctcatgacaaattttggtgttctcgtctcattttagtctagcttagattaatggcatccatatattggtgaactgaaacagattgtatatgtccagtcttgaacaaacttcattatacaatgcataatcagaaaagatacagacatatattggcagatcacataaagtggtgtatctatgattgggtggtattttggacatacaaagtctactggtccctcatttgttaacagcatacatttgttcctatcaagacaaaagcactttacaacagtttggtagtaagttggtgttatgtgcgtgtctatttagatagagtggtagtaaaggaaggacactttttcttgatataccaaaatcacacataaaaaagaagtgtcattttcatgatcaacatgtggggtatgaacaaaaatgttctcccccctccaaccaacattgaagtcatcacacataaaaagcaaaaacatttaacaataatacatgcagacacatgtgcatgcatgtgtggatcacgcaaggacatactaattcaattaggtattcacaattaattagtgcaggaaatgacatgtaattacaattatatatgcacaacgatccttgtgtatttgtgtgacccattgtagtagcatttgattcctttcttgtgcctttctctacattgaattcgatctttgccaacagcggcttgctgatgagctcctgtgccattgcactgctgagctgcaccaaacagggacatcttttaagagcttgttgcctggaaatgatccatgtaaccaactgttcaggaagagcacactgtttgctgctcactttagctaaagcaaaactgtgtgcattatgcaatgcatatgcatccttccatctacccctgtgtcctttgccccccaaactgtgtaactacagtttaccatgcacatacatacaatgcacatctacccaattgtagcattgttgcaaggcctacttcagaattcagttagtccccaattgatccaactgcacacatatacatttacatatacatatacacaaacataccagcttggagaaaaggttgtaacaactttgctaaatgtgagatgtgtaatgtgtgttcttcctcttttcagggacccatggctgtcgtccaattcttgcaacatggacgcccatcgctccgtaggattgtcttctcctattgaggtatatatccttacattgttcaaagcttctttcgattcctagctaactgcatatccatgcagaaattcattagctcgcattcattctgaacatgatgtctgaaactctgaattttttttcgtttgtgcgtgtttcagaacttggaaccgtgcagatcgagcagctcgcaggtgtccaaccatgagctgagtagccctagtctcgagttcactctagggaggcctgactggcacggtgcagatcatgattagatggcaatcacagaggctaatgatcaaaaaaaaatttctcctgagatgtgaaatatatatgtgatatacaccaacctggtgctgatcatctttcgccaaccccagcttagccagagccagttcgtctgaagcttgtcatggcgaagaatgatcagcagcaatggcttgaaacgcacatcatatccactgcgtcgtcgtcatcgtcgtcgcaatcgatcggagaagagatatatatttcgcgtctcgatctcatcatcacaatttgggttttcttgattccttcttcttcttctttttgcaattaatatcatggatgcagctagagtttccttgtctgatctccatatttatttagttttgttcgccgtgccgggatcgatttacagtgtagttcagtggtgagctagctagctagagagtgagtgagtgagtgtcagctaggcagctggagatcgagagtgtgagtttggtgatgagttggttgtgtgtttgtcagtgtgtgtgaaagtgtgtgtgccattagcacatggaaagttggaaaggagagaaaggaagaaagaaaagggaattgagttcaggtgaagcaatctgccaatctatctagctacctatctatccatctacttagctcagttgctcagatgatgatctcagatttccatggcccttttttgtgtgcatgcatgccgcatatgcttctttctttaatccctgcaggttcttgcacttcctttagcctcattgatcatgtcagatactgcctacctgttcttttccagcaaccatggccggtgtgaaccggcctctcttgaccagaaactagcagatatctga</dnaseqindica> 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