Difference between revisions of "Os10g0467800"
(→Function: The gene encodes a essential subunit which is required for the correct assembly of the enzyme responsible for cellulose synthesis.) |
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==Annotated Information== | ==Annotated Information== | ||
===Function=== | ===Function=== | ||
| − | + | Cellulose is the major component in wood, which is present universally in plant cell walls and provides mechanical strength to the plant. Cellulose accounts for about 20 % and 50 % of the primary and secondary cell walls in higher plants, respectively. Membrane-bound cellulose synthase enzyme complexes (CelS) are believed to play a key role in the biosynthesis of cellulose. These complexes are discernible as hexameric rosettes under freeze-fracture electron microscopy and consist of 36 cellulose synthase (CesA) proteins per rosette.The AtCesA7 gene encodes a essential subunit which is required for the correct assembly of the enzyme responsible for cellulose synthesis. Cellulose is a homogenous polymer of β-1,4-glucan synthesized from UDP-Glc. Plant CesA (cellulose synthase catalytic subunit) genes were first isolated by random sequencing of cotton (Gossypium hirsutum) expressed sequence tags . Based on mutant analyses, characterization of six CesA genes of Arabidopsis has been reported. But cellulose biogenesis is a complex process, which still requires ongoing study to comprehend completely its pathways and mechanisms. Even with the completion of the Arabidopsis thaliana genome sequencing project, researchers still struggle to understand the biogenesis of cellulose in A. thaliana，let alone other plants that are less well studied. | |
===Expression=== | ===Expression=== | ||
Revision as of 08:54, 3 June 2014
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Contents
Annotated Information
Function
Cellulose is the major component in wood, which is present universally in plant cell walls and provides mechanical strength to the plant. Cellulose accounts for about 20 % and 50 % of the primary and secondary cell walls in higher plants, respectively. Membrane-bound cellulose synthase enzyme complexes (CelS) are believed to play a key role in the biosynthesis of cellulose. These complexes are discernible as hexameric rosettes under freeze-fracture electron microscopy and consist of 36 cellulose synthase (CesA) proteins per rosette.The AtCesA7 gene encodes a essential subunit which is required for the correct assembly of the enzyme responsible for cellulose synthesis. Cellulose is a homogenous polymer of β-1,4-glucan synthesized from UDP-Glc. Plant CesA (cellulose synthase catalytic subunit) genes were first isolated by random sequencing of cotton (Gossypium hirsutum) expressed sequence tags . Based on mutant analyses, characterization of six CesA genes of Arabidopsis has been reported. But cellulose biogenesis is a complex process, which still requires ongoing study to comprehend completely its pathways and mechanisms. Even with the completion of the Arabidopsis thaliana genome sequencing project, researchers still struggle to understand the biogenesis of cellulose in A. thaliana，let alone other plants that are less well studied.
Expression
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Evolution
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Labs working on this gene
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References
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Structured Information
| Gene Name |
Os10g0467800 |
|---|---|
| Description |
Similar to Cellulose synthase (Fragment) |
| Version |
NM_001071346.1 GI:115482435 GeneID:4348853 |
| Length |
4512 bp |
| Definition |
Oryza sativa Japonica Group Os10g0467800, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 10:17719262..17723773 |
| Sequence Coding Region |
17719294..17719507,17719609..17719736,17719852..17719921,17720009..17720165,17720266..17720878 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008403:17719262..17723773 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008403:17719262..17723773 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggacaccgcctccgtcaccggtggcgagcacaaggggaaggagaagacgtgccgggtgtgcggcgaggaggtggcggcgagggaggacgggaagccgttcgtggcgtgcgccgagtgcggcttcccggtgtgcaagccctgctacgagtacgagcgcagcgagggcacccagtgctgcccccagtgcaacacccgctacaagcgccacaaagggtgcccacgggtggaaggcgacgaggacgacggcggcgacatggacgacttcgaggaggagttccagatcaagagccccaccaagcagaaacccccccacgagcccgtcaacttcgacgtctactcggagaacggcgagcagccggcacagaagtggcgccctggaggcccggcgctctcttccttcaccggaagcgtggctgggaaggatctggagcaggagagggagatggagggtggcatggagtggaaggacaggatcgacaagtggaagacgaagcaggagaagcggggcaagctcaaccgcgacgacagcgacgacgacgacgacaagaacgacgacgagtacatgctgctcgcggaggcgaggcagccgctgtggaggaaggtgccgatcccgtcgagcaagatcaacccgtaccggatcgtgatcgtgctccggctggtggtgctctgcttcttcctcaagttccggatcacgacgccggcgatggacgcggtgccgctgtggctggcctcggtgatctgcgagctgtggttcgcgctgtcgtggatcctcgaccagctgcccaagtggtcgccggtgacgagggagacgtacctggaccggctggccctccggtacgagcgcgacggcgagccgtgccgcctggccccgatcgatttcttcgtcagcacggtggacccgctcaaggagccgcccatcatcaccgccaacaccgtgctgtccatcctcgccgtcgactaccccgtcgaccgcgtctcctgctacgtctccgacgacggcgcgtccatgctgctcttcgacacgctctccgagaccgccgagttcgcccgccggtgggtccccttctgcaagaagttcaccatcgagccccgcgcccccgagttctacttctcccagaagatcgactacctcaaggacaaggtccagcccaccttcgtcaaagaacgccgcgccatgaagagagagtatgaggagttcaaggtgaggataaacgcgctggtggcgaaggcgcagaagaagccggaggaagggtgggtgatgcaggacgggacgccatggccggggaacaacacgagggaccacccggggatgatccaggtgtacctgggcagccagggcgcgctcgacgtcgagggcagcgagctgccgcggctggtgtacgtgtcccgcgagaagcggcccggctacaaccaccacaagaaggccggcgccatgaactccctcgttcgcgtctccgccgtgcttaccaacgcccccttcatcctcaacctcgactgcgaccactacgtcaacaacagcaaggccgtccgcgaggccatgtgcttcctcatggacaagcagctcggcaagaagctgtgctacgtccagttcccccagcgcttcgacggcatcgaccgccacgatcgctacgccaaccgcaacaccgtcttcttcgacatcaacatgaaggggctggacgggatacaggggccggtgtacgtggggacggggacggtgttcaacaggcaggcgctgtacggatacgacccgccgcggccggagaagaggccgaagatgacgtgcgactgctggccgtcgtggtgctgctgctgctgctgcttcggcggggggaagcgcggcaagtcgcacaagaacaagaagggcggcggcggcggcgagggcggcggcctcgacgagccgcgccgcgggctgctcgggttctacaagaagaggagcaagaaggacaagctcggcggcggcgcggcgtcgctcgccggagggaagaaagggtaccggaagcaccagcgcgggttcgagctggaggagatcgaggagggcctcgaggggtacgacgagctggagcgctcgtcgctcatgtcgcagaagagcttcgagaagcggttcggccagtcgccggtgttcatcgcctccaccctcgtcgaggacggcggcctcccccagggcgccgccgccgaccccgccgccctcatcaaggaggccatccacgtcatcagctgcggctacgaggagaagaccgagtggggcaaggagattgggtggatctacgggtcggtgacggaggacatcttaacggggttcaagatgcattgccgtgggtggaagtcggtgtactgcacgccggcgagggcggcattcaaggggtcggcgcccatcaacctgtcggatcgtctgcaccaggtgctccggtgggcgctcggctccgtcgagatcttcatgagccgccattgcccgctctggtacgcctatggcggccgcctcaagtggctcgagcgcttcgcctacaccaacaccatcgtctaccccttcacctccattcccctcctcgcctactgcaccatccccgccgtctgcctcctcaccggcaagttcatcatccccacgcttaacaatttggcgagcatatggttcatagcgcttttcctgtcgatcatcgcgacgggggtgctggagctgcggtggagcggggtgagcatcgaggactggtggaggaacgagcagttctgggtgatcggcggcgtgtcggcgcacctgttcgccgtgttccagggcctcctcaaggtgctcggcggcgtggacaccaacttcacggtgacgtccaaggccgccgccgacgagaccgacgcgttcggcgagctctacctgttcaagtggacgacgctgctggtgccgccgacgacgctgatcatcatcaacatggtggggatcgtcgccggcgtgtcggacgccgtgaacaacgggtacgggtcgtggggcccgctgttcgggaagctcttcttctccttctgggtcatcctccacctctaccccttcctcaaggggctcatggggaggcagaaccggacgcccaccattgtcgtgctctggtccatcctcctcgcctccatcttctccctcgtctgggtcaggatcgaccccttcatccccaagcccaagggccccgtcctcaagccatgcggggtctcgtgctga</cdnaseq> |
| Protein Sequence |
<aaseq>MDTASVTGGEHKGKEKTCRVCGEEVAAREDGKPFVACAECGFPV CKPCYEYERSEGTQCCPQCNTRYKRHKGCPRVEGDEDDGGDMDDFEEEFQIKSPTKQK PPHEPVNFDVYSENGEQPAQKWRPGGPALSSFTGSVAGKDLEQEREMEGGMEWKDRID KWKTKQEKRGKLNRDDSDDDDDKNDDEYMLLAEARQPLWRKVPIPSSKINPYRIVIVL RLVVLCFFLKFRITTPAMDAVPLWLASVICELWFALSWILDQLPKWSPVTRETYLDRL ALRYERDGEPCRLAPIDFFVSTVDPLKEPPIITANTVLSILAVDYPVDRVSCYVSDDG ASMLLFDTLSETAEFARRWVPFCKKFTIEPRAPEFYFSQKIDYLKDKVQPTFVKERRA MKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSQGALD VEGSELPRLVYVSREKRPGYNHHKKAGAMNSLVRVSAVLTNAPFILNLDCDHYVNNSK AVREAMCFLMDKQLGKKLCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPV YVGTGTVFNRQALYGYDPPRPEKRPKMTCDCWPSWCCCCCCFGGGKRGKSHKNKKGGG GGEGGGLDEPRRGLLGFYKKRSKKDKLGGGAASLAGGKKGYRKHQRGFELEEIEEGLE GYDELERSSLMSQKSFEKRFGQSPVFIASTLVEDGGLPQGAAADPAALIKEAIHVISC GYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCTPARAAFKGSAPINLSDRL HQVLRWALGSVEIFMSRHCPLWYAYGGRLKWLERFAYTNTIVYPFTSIPLLAYCTIPA VCLLTGKFIIPTLNNLASIWFIALFLSIIATGVLELRWSGVSIEDWWRNEQFWVIGGV SAHLFAVFQGLLKVLGGVDTNFTVTSKAAADETDAFGELYLFKWTTLLVPPTTLIIIN MVGIVAGVSDAVNNGYGSWGPLFGKLFFSFWVILHLYPFLKGLMGRQNRTPTIVVLWS ILLASIFSLVWVRIDPFIPKPKGPVLKPCGVSC</aaseq> |
| Gene Sequence |
<dnaseqindica>33..246#348..475#591..660#748..904#1005..1617#2048..2524#2602..3195#3275..3625#3724..4311#gcccaccaacgtcgcttccccggcacctcaccatggacaccgcctccgtcaccggtggcgagcacaaggggaaggagaagacgtgccgggtgtgcggcgaggaggtggcggcgagggaggacgggaagccgttcgtggcgtgcgccgagtgcggcttcccggtgtgcaagccctgctacgagtacgagcgcagcgagggcacccagtgctgcccccagtgcaacacccgctacaagcgccacaaaggtaacatcatgtgttgtgtccatgtgatcaatcgcaatttagttcacaagatcgagcttgacaagaatgtctgtctgtctgtctcgatcgatcggtcgcagggtgcccacgggtggaaggcgacgaggacgacggcggcgacatggacgacttcgaggaggagttccagatcaagagccccaccaagcagaaacccccccacgagcccgtcaacttcgacgtctactcggtgagagctcaactcgactcgatcgatccatcgccattgatttctcactgcaattgctctgcaatcaagtgcttgtaaactgatgcgaaacctgtatacaacctttgtcttgcaggagaacggcgagcagccggcacagaagtggcgccctggaggcccggcgctctcttccttcaccggaagcggtcggtactcaaatcccgcaagaaattgcgtttcttggtgtaacaattcatctgaagatgtgtgtgtggattgctgtgaaattgcagtggctgggaaggatctggagcaggagagggagatggagggtggcatggagtggaaggacaggatcgacaagtggaagacgaagcaggagaagcggggcaagctcaaccgcgacgacagcgacgacgacgacgacaagaacgacgacgagtacatgctgtaagcttagctctccaaagatctatctatcgatcgacctcagatttttcaaatcttgtgaactttggcatgatcgtgatgatcgaatttctgcatgcaggctcgcggaggcgaggcagccgctgtggaggaaggtgccgatcccgtcgagcaagatcaacccgtaccggatcgtgatcgtgctccggctggtggtgctctgcttcttcctcaagttccggatcacgacgccggcgatggacgcggtgccgctgtggctggcctcggtgatctgcgagctgtggttcgcgctgtcgtggatcctcgaccagctgcccaagtggtcgccggtgacgagggagacgtacctggaccggctggccctccggtacgagcgcgacggcgagccgtgccgcctggccccgatcgatttcttcgtcagcacggtggacccgctcaaggagccgcccatcatcaccgccaacaccgtgctgtccatcctcgccgtcgactaccccgtcgaccgcgtctcctgctacgtctccgacgacggcgcgtccatgctgctcttcgacacgctctccgagaccgccgagttcgcccgccggtgggtccccttctgcaagaagttcaccatcgagccccgcgcccccgagttctacttctcccagaagatcgactacctcaaggacaaggtccagcccaccttcgtcaaagaacgccgcgccatgaaggtaaaccttctccactccatctgcgggttgagtgtcgtggatataccggattcaagggtttaatatattgttttaggcatttgtgttggggggaccgatatagccggttatttcgatccaaaattattttattttattttgaaaaaaaatgattaaaatttgaataaatattatcaaattcacaaaaatttgaaaaacatttaaaagtttcgtccgaaataatatcatatcaggttgtccaatagaactgaaatgtcaaaaattatgttatgtaattttgaaccctcattcaattggagcatctcgtgatcagtctgtttttggagatgtaggctatggctaaacttcgttaccgatatatcccttctcgatgttgtcatccagtttagatcgtctataagttttttaacacctactcttgatgtgacagagagagtatgaggagttcaaggtgaggataaacgcgctggtggcgaaggcgcagaagaagccggaggaagggtgggtgatgcaggacgggacgccatggccggggaacaacacgagggaccacccggggatgatccaggtgtacctgggcagccagggcgcgctcgacgtcgagggcagcgagctgccgcggctggtgtacgtgtcccgcgagaagcggcccggctacaaccaccacaagaaggccggcgccatgaactccctcgttcgcgtctccgccgtgcttaccaacgcccccttcatcctcaacctcgactgcgaccactacgtcaacaacagcaaggccgtccgcgaggccatgtgcttcctcatggacaagcagctcggcaagaagctgtgctacgtccagttcccccagcgcttcgacggcatcgaccgccacgatcgctacgccaaccgcaacaccgtcttcttcgacgtgagcactgccttcttctccggcgtgcgtgcgtcgcgccgtgacgtgagctaacgatggtgtcgtttgatgtgcagatcaacatgaaggggctggacgggatacaggggccggtgtacgtggggacggggacggtgttcaacaggcaggcgctgtacggatacgacccgccgcggccggagaagaggccgaagatgacgtgcgactgctggccgtcgtggtgctgctgctgctgctgcttcggcggggggaagcgcggcaagtcgcacaagaacaagaagggcggcggcggcggcgagggcggcggcctcgacgagccgcgccgcgggctgctcgggttctacaagaagaggagcaagaaggacaagctcggcggcggcgcggcgtcgctcgccggagggaagaaagggtaccggaagcaccagcgcgggttcgagctggaggagatcgaggagggcctcgaggggtacgacgagctggagcgctcgtcgctcatgtcgcagaagagcttcgagaagcggttcggccagtcgccggtgttcatcgcctccaccctcgtcgaggacggcggcctcccccagggcgccgccgccgaccccgccgccctcatcaaggaggccatccacgtcatcagctgcggctacgaggagaagaccgagtggggcaaggaggtaatccatcaaaaaatctccaccattttcaagctcgaggaagatgatcgaagctaaccaaaaatcaaaattcttgcagattgggtggatctacgggtcggtgacggaggacatcttaacggggttcaagatgcattgccgtgggtggaagtcggtgtactgcacgccggcgagggcggcattcaaggggtcggcgcccatcaacctgtcggatcgtctgcaccaggtgctccggtgggcgctcggctccgtcgagatcttcatgagccgccattgcccgctctggtacgcctatggcggccgcctcaagtggctcgagcgcttcgcctacaccaacaccatcgtctaccccttcacctccattcccctcctcgcctactgcaccatccccgccgtctgcctcctcaccggcaagttcatcatccccacggtaaagaaccaaccaagaacatcaaaatttccgctaaaatttcaagctccaaatgatcttgcactgaccgatcgatcgcgatcttggtgtacgtgtagcttaacaatttggcgagcatatggttcatagcgcttttcctgtcgatcatcgcgacgggggtgctggagctgcggtggagcggggtgagcatcgaggactggtggaggaacgagcagttctgggtgatcggcggcgtgtcggcgcacctgttcgccgtgttccagggcctcctcaaggtgctcggcggcgtggacaccaacttcacggtgacgtccaaggccgccgccgacgagaccgacgcgttcggcgagctctacctgttcaagtggacgacgctgctggtgccgccgacgacgctgatcatcatcaacatggtggggatcgtcgccggcgtgtcggacgccgtgaacaacgggtacgggtcgtggggcccgctgttcgggaagctcttcttctccttctgggtcatcctccacctctaccccttcctcaaggggctcatggggaggcagaaccggacgcccaccattgtcgtgctctggtccatcctcctcgcctccatcttctccctcgtctgggtcaggatcgaccccttcatccccaagcccaagggccccgtcctcaagccatgcggggtctcgtgctgagctgctgctgctacttctctgtgtctctgcattttgcaagagggatgaccggatggatgattcttgttgtatggagtattttgacttgttcatgtacaagtttttgtgagtgggataaaagtgttttgggggtaaaatttgtaagaactgaggtggagattatactcgaatttaagaacaattgtttttgaattttctttt</dnaseqindica> |
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