Difference between revisions of "User:Jieomlong"

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===Evolution===
 
===Evolution===
 
Please input evolution information here.
 
Please input evolution information here.
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F-box proteins comprise one of the large protein families in plants. There are more than 692 and 779 F-box genes in the A. thaliana and rice genomes, respectively (Xu et al., 2009).Previous studies demonstrated that F-box proteins are involved in the regulation of several biological processes, including circadian clock, self-incompatibility, photomorphogenesis, floral meristem, phytohormonal signalling, and responses to abiotic stresses (Sullivan et al., 2003; Moon et al., 2004; Ni et al.,2004; Smalle and Vierstra, 2004; Dreher and Callis, 2007). For instance, the F-box protein TIR1/AFB can bind to the transcriptional repressor protein Aux/IAA, thus promoting their proteasomal degradation and activating auxin-induced transcription (Dharmasiri et al., 2005; Tan et al., 2007). The involvement of
 
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F-box proteins in response to both biotic and abiotic stresses has also been reported.
 
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You can also add sub-section(s) at will.
 
  
 
==Labs working on this gene==
 
==Labs working on this gene==

Revision as of 11:32, 3 June 2014

Please input one-sentence summary here. F-box proteins play diverse roles in regulating numerous physiological processes in plants. This study isolated a gene (OsFbx352) from rice encoding an F-box domain protein and characterized its role in seed germination. Expression of OsFbx352 was upregulated by abscisic acid (ABA).

Annotated Information

Function

Please input function information here. 1.OsFbx352 encodes a F-box domain protein and is suppressed by glucose. 2.Generation of transgenic rice plants with altered. 3.Germination of transgenic seeds displayed different sensitivity to ABA expression of OsFbx352.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA000063

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA000063, complete gene.

LocusTag

P0483G10.23

Ensembl Transcript ID

BGIOSGA000063-TA

Ensembl Protein ID

BGIOSGA000063-PA

Length

2809

Source

Oryza sativa Indica Group 

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:46486990..46489798

Sequence Coding Region

46489660..46489798,46489009..46489108,46488808..46488928,46488319..46488431,46488095..46488216
,46487646..46487805,46486990..46487110

Genome Context

<gbrowseImage1> name=IndicaChromosome01:46486990..46489798 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:46486990..46489798 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGATGTGAGCAGGAGGAAGAAGTGGGTGGCGTGGGTGGCGGCGGTCACCATCTTCGTCGTGCTCATGCTCGTCACCCCGGCCATCCCGCAGAACGAGGAGTACCACGACTTCGCCGACCAGCGCCGCCTCTTCCTCGGGATCCCCAATACGCTGAATGTGATTTCAAACATCCCCTTCTTTTTTGTGGGTGTCGTTGGGCTCGTCTTGTGCCATTACAAAAACTACTTCAGGCTAAACTCGCAAGGGGAGCTCTGGAGTTGGACACTGTTCTTTGCTGGTGTGACTGCTGTTGCTTTTGGTTCATCCTATTATCATCTCAAACCGAATGATGCCACACTAGTTTGGGACAGATTGCCGATGACAATTGCTTTCACATCTGTCATGGCCATTTTCATTATTGAGAGGGTTGATGATAGGGCAGGAACAAAGTCCCTAGCACCTCTTGTTATTGCTGGTGCACTAAGCATCATGTTCTTTGACGATCTTCGCCCATATGCAGTAATTCAGTTTGTTCCATGCATTGCAATACCTGTGATGGCTATTGTAATTCCACCAATGTATACACATTCGAGCTATTGGCTGTGGGCAGCAGGATTTTACCTCCTTGCTAAGGTAGAAGAGGCCGCAGATAAACCTATATATAAATGGACCCATCAAATTGTTAGCGGTCATACTCTTAAGCATCTAGCTGCTGCAATGGTGCCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAGGGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGACTCGATTCAACAAGGACAGGAATACAGTCGACTACAACTATATTGCAGTTTCCACTACACCTGAACCATAG</cdnaseq>

Protein Sequence

<aaseq>MDVSRRKKWVAWVAAVTIFVVLMLVTPAIPQNEEYHDFADQRRLFLGIPNTLNVISNIPFFFVGVVGLVLCHYKNYFRLNSQGELWSWTLFFAGVTAVAFGSSYYHLKPNDATLVWDRLPMTIAFTSVMAIFIIERVDDRAGTKSLAPLVIAGALSIMFFDDLRPYAVIQFVPCIAIPVMAIVIPPMYTHSSYWLWAAGFYLLAKVEEAADKPIYKWTHQIVSGHTLKHLAAAMVPVFLALMLAKRTVEPERVSLFQRWKVKLVAVRETRFNKDRNTVDYNYIAVSTTPEP</aaseq>

Gene Sequence

<dnaseqindica>1..139#691..790#871..991#1368..1480#1583..1704#1994..2153#2689..2809#ATGGATGTGAGCAGGAGGAAGAAGTGGGTGGCGTGGGTGGCGGCGGTCACCATCTTCGTCGTGCTCATGCTCGTCACCCCGGCCATCCCGCAGAACGAGGAGTACCACGACTTCGCCGACCAGCGCCGCCTCTTCCTCGGTATGCCACAAACCAACCCTCCCTCCCCGCCGCAAACCTAGGGCGGACCTTCCCTTGCGGCCGCCATAGCTCGCCGTCCGCGGTATTGAGCTCCCGTCTCTCCGAGCTATTGAGCTCTCGGGGTAGCCTCCACCCGGCGCCGGCAAGACGATCCGCGAGCAGGAGAGCAGCGATTGTGCCAGTGCTTGTCCCTGACGGCGCAATGGCCAACGTTGAGTGACGAGTTGACTCGAAATCGCGAATTCGAGGTCGCTTGCATCGCCTAAATCGATCCCCTTTGTATTCACTACAAAAATTGATTGCCCTTTGTTTGCGCTGGGTTCAGCAAGATTAGCTTGTTAGGAAGGATTTTGCAGGCTATACCAGTTTCCTGTTTATTTCACGAACCCAAAATAAACATGAATATAGTATAATTGAGGGGGAATTTGAGGCGCAAACGAATAGAGTTTAAATTTTGCTTATATGTTCAATAAGAGGGTTGCAATGCTTGTAATCACTACTTGATGCACTAAGTTTGCAAAATCATGTGGATTTTTTTTTTTGTTTTGCAGGGATCCCCAATACGCTGAATGTGATTTCAAACATCCCCTTCTTTTTTGTGGGTGTCGTTGGGCTCGTCTTGTGCCATTACAAAAACTACTTCAGGCTAAAGTTAGACCATTACTGGTTCATCTTCTAATTCTAGTTAAGATTTTGATGCACTCTGTTGTTAACCTTCCCCTTCCTGGCAGCTCGCAAGGGGAGCTCTGGAGTTGGACACTGTTCTTTGCTGGTGTGACTGCTGTTGCTTTTGGTTCATCCTATTATCATCTCAAACCGAATGATGCCACACTAGTTTGGGACAGATTGCCGGTGAGTTGTTTCTAGACTTACATTGCCTTGCTCTAGGATTTGTACACACCCCATTATGTTGAAGCTGTCTCAGAATGTCAATGCATACATTTTTTTTGGTGGGATAGAATTCAACTCAGATCCTTGTGTAGTATAATCTGAATATGCTATGGCCCTGTTTAGATAGTGTTGTTCTGTTGGGTGTGATCTGCTTGAATCAAAACAGGGTAACTAATCCACTTGGATCTTTTGCCTGATACGCTCTAGTATATTTGGCTTGTTTTCTTCAGAATTGCCTGTCAGAGACATAAAGCATGTCATCAGTTCATAATTTTCACCCTTGCTTTTATCAATATTTAATATGTTAAAGGATGGCATATTTGCTTGTTCTATGTAGATGACAATTGCTTTCACATCTGTCATGGCCATTTTCATTATTGAGAGGGTTGATGATAGGGCAGGAACAAAGTCCCTAGCACCTCTTGTTATTGCTGGTGCACTAAGCATCATGTATTGGAGGCAAGCTTCTCCAATTGTTTAACCATCCTTCCTCAGAAATATTTTCTGTACTTCTTTCACACCTTCCATTTTGCTGCCTTAACTCTTATGTAGGTTCTTTGACGATCTTCGCCCATATGCAGTAATTCAGTTTGTTCCATGCATTGCAATACCTGTGATGGCTATTGTAATTCCACCAATGTATACACATTCGAGCTATTGGCTGTGGGCAGCAGGTTAGTGTTATTCTTGATCAATAGTATTTGATCTATGTACCTTCATTAGCATTTAGGTTGAAAAATGTGGTATTTGTGGTTCACCTATATATTATGAATCATTCAATTGATCATTTCTCTGCACCTAATAACTGTTGATGATACTTAAATGGTTTTCATTTTAATCTATTTCTACATATCATAAATTGATTCGCAGTGACCAAGTTAATTGATTGGTTTTCTGGAAATTCATACACAATCAGCACCTCACCATATTTTTCTGTTTTCTGATTTCTCAAAACAATTCCAGGATTTTACCTCCTTGCTAAGGTAGAAGAGGCCGCAGATAAACCTATATATAAATGGACCCATCAAATTGTTAGCGGTCATACTCTTAAGCATCTAGCTGCTGCAATGGTGCCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAGGTATGCTTTATATACTGGCGTTTTAAGAACCACGTCTTTACTTCGATAAGTGCATCATTGGGTTCAACTCTTGAACTGTTCTTCTATTTAAGCTGTTGAATGGACCTTGGTCAGAATTCAGAAGATATACTTGCGTTGGCATTGTTACTTTGTCTTAAGGAATTATTCCATCATAAATTATTGAGCTATCTGTTCTATTAATTTTGCAAATGCAATCACTATTTGTTTTTGGGAAAAGAATGAAGTTTGTTTTCCTTCGGTTAGAATAAATTCATAAATGCCGTTGTAACTTTTGAATTAGTGTGTTGTTTGTTTCGCCAGTAATTCCATGGTGGTTCTCCCATAGTCCCATATCTTTGCTTCTTAGGATGAGCATATTTCAAATAATTTTATCCCCTCCATTGCAAACGATATCTGTTGTCTGTTGATTGATTTGTCAGCCTTTTTTTTAGCTCTGTTAATATCATGATTAAATTTATGAAGTCTTGCATAACTCTACCCCGTGTCTCATGATATTTTTTTTTCTGGAATGCAGGGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGACTCGATTCAACAAGGACAGGAATACAGTCGACTACAACTATATTGCAGTTTCCACTACACCTGAACCATAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA000063

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