Difference between revisions of "Os02g0738900"
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==Annotated Information== | ==Annotated Information== | ||
| − | + | Rice bc3 is one of the classical rice brittle culm mutants (Tanaka 1967), and has been used as a phenotype marker in rice genetic maps for breeding (Iwata and Omura 1977). | |
===Expression=== | ===Expression=== | ||
Revision as of 12:11, 3 June 2014
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Contents
Annotated Information
Rice bc3 is one of the classical rice brittle culm mutants (Tanaka 1967), and has been used as a phenotype marker in rice genetic maps for breeding (Iwata and Omura 1977).
Expression
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Evolution
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Labs working on this gene
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References
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Structured Information
| Gene Name |
Os02g0738900 |
|---|---|
| Description |
Similar to Dynamin 2B (EC 3.6.5.5) (Dynamin-related protein 2B) (Dynamin-like protein 3) |
| Version |
NM_001054599.1 GI:115448568 GeneID:4330669 |
| Length |
9497 bp |
| Definition |
Oryza sativa Japonica Group Os02g0738900, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 2:31748536..31758032 |
| Sequence Coding Region |
31748895..31749121,31750320..31750492,31751055..31751122,31751228..31751341,31751649..31751806 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008395:31748536..31758032 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008395:31748536..31758032 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgtcgtcgtcggccatggaggccatggacgagctcgtccagctcgccgagtccatgcgccaggccgcctccctcctggccgacgacgacccctccgacgaggccagcccgcgccgcccctccaccttcctcaacgccgtcgcgctcggcaacgtcggcgccggcaagtcggccgtgctcaacagcctcatcggccaccccgtgctgccgacgggtgagaacggggcgacgcgggcgccgatagtggtcgacctgcagagggatccggggctgagcagcaaatccatcgtcctgcagatcgacagcaagtcgcagcaggtgtcggcaagtgctctccgccattcgctgcaggacaggctgagcaagggggcgtccggtggatcagggaaaggccgaaacgatgagatttacctcaagctgcggacaagtacagctcctccaataaaattggtcgatttgcctggcatagaccaacgagttatggatgattcaactatcagtgaatatgctggacataatgatgcaatattgattgttgtgataccagcaatgcaagctgctgatgttgcatcatctcgagctctcagactagcgaaggatattgatccagatggaaccagaacaataggtgttttaagtaaaattgatcaagcatctgcagatgcaaaaactgtatcttgtgttcaggctatcttgtctaacaagggtgcaccacgagcagcagctgaaattgagtgggttgctctaatagggcaatctgtctcaattgcatcggcccaagctggatcagttggttctgagaactcactggaaactgcctggcaggctgaagcggagacactcaaatccatcctaactggagctcctcgaagtaagctagggagaattgctctcgtggataccattgctaagcagatacgtaaaaggatgaaaattcggctacctaaccttttgtccgggcttcaggggaagtctcagatagtgcaaaatgaacttgcaaggttgggagaacagatggtatcaagcgctgaaggaaccagggctgttgctttggagctttgccgtgaattcgaagacaagtttcttgcccatgttacttctggtgaggggtctggttggaaaattgttgcaagctttgaggggaagtttccagataggatcaaacagcttcctttggacaggcattttgatattaacaatgtcaaaaggattgtcctggaagccgatggttatcaaccatatttgatatctccagagaaaggtttaaaatccttaataaaaggagtacttgaaatggcaaaggagccatcacggctgtgtgttgaagaggtacaccgtgtattattggacatagtaaatgcttctgcaaatgctacaccaggacttggaagatatcctccattcaaacgcgaggtcgttgaaattgcaaccaatgcattggatgtcttcaaaagtgatgcaaaaaagatggtagttgcacttgttgatatggagcgtgcctttgtcccaccacaacacttcatccgtttagtacaaagaagaatggaaaggcaacgtcgtgaggatgaggtgaaaaacaggtcatctaagaaagcccaagatgcagaacagtccaacaagggctcaggcacaggatctgagcaatctggtggtgccttgaaatcgttgaaagaaaaattcagtcagcaagacaaagataaagatgcaaaagagggaccaaatttgcaggttgctgggcctggtggtgaaataactgcaggctaccttttgaagaaaagtgcaaaaaataatgaatggagcaaaagatggtttgtcctaaatgagaagagtggaaagcttgggtacaccaagaaacaagaggagagacattttcgaggtgttattgtcctggaggaatgtaatctggaagagatagaagaggaagagctttccaagagtttgaaggattcaaagaaggccaatggggcagagaaaggcccaagtcttgtatttaagattactaacagagttgcctacaaaactgtgctgaaatctcatagtgctgttatactgaaggccgagactattgctgacaaggttgaatggatgaagaagataagaggtgtcattcaaagcaaagggggttctgtgaagggtttaaatactcctgagggtggttccatgaggcaaagccattctgatgggtcccttgatacgatggcccggaagcctgctgatcctgaagaagaacttcggtggatgtctcaagaagttcgtggttatgtagaggctgttttgaacagtttggcagcaaatgttccaaaggcaatcgtactttgccaagtggagaaagcaaaggaagatatgctaaatcagctctacagcaaaataagtgctcaaaccaatgcaaagattgaagaacttctccaagaggaccacaatgctaaacgtagacgggagaagtaccaaaaacaatcatctctattgtcaaagcttactcgtcagcttagtatccatgacaatagagcttctgttgcatcgtataccaatgatagttctggagctgagagtagcccacggacctctggccagtcaggtgaggactggaggtctgcgttcgattctgcatcaaatggctctgttgatcgatccagttcacacaatgaaacaaggtcaagaagtgctgacagccgtggcaaacgctatgaaaatggggacgtgaatggtggtaactctggcagccgacgcacaccaaaccgtttgccaccagcacctccagggcaaaaatattaa</cdnaseq> |
| Protein Sequence |
<aaseq>MSSSAMEAMDELVQLAESMRQAASLLADDDPSDEASPRRPSTFL NAVALGNVGAGKSAVLNSLIGHPVLPTGENGATRAPIVVDLQRDPGLSSKSIVLQIDS KSQQVSASALRHSLQDRLSKGASGGSGKGRNDEIYLKLRTSTAPPIKLVDLPGIDQRV MDDSTISEYAGHNDAILIVVIPAMQAADVASSRALRLAKDIDPDGTRTIGVLSKIDQA SADAKTVSCVQAILSNKGAPRAAAEIEWVALIGQSVSIASAQAGSVGSENSLETAWQA EAETLKSILTGAPRSKLGRIALVDTIAKQIRKRMKIRLPNLLSGLQGKSQIVQNELAR LGEQMVSSAEGTRAVALELCREFEDKFLAHVTSGEGSGWKIVASFEGKFPDRIKQLPL DRHFDINNVKRIVLEADGYQPYLISPEKGLKSLIKGVLEMAKEPSRLCVEEVHRVLLD IVNASANATPGLGRYPPFKREVVEIATNALDVFKSDAKKMVVALVDMERAFVPPQHFI RLVQRRMERQRREDEVKNRSSKKAQDAEQSNKGSGTGSEQSGGALKSLKEKFSQQDKD KDAKEGPNLQVAGPGGEITAGYLLKKSAKNNEWSKRWFVLNEKSGKLGYTKKQEERHF RGVIVLEECNLEEIEEEELSKSLKDSKKANGAEKGPSLVFKITNRVAYKTVLKSHSAV ILKAETIADKVEWMKKIRGVIQSKGGSVKGLNTPEGGSMRQSHSDGSLDTMARKPADP EEELRWMSQEVRGYVEAVLNSLAANVPKAIVLCQVEKAKEDMLNQLYSKISAQTNAKI EELLQEDHNAKRRREKYQKQSSLLSKLTRQLSIHDNRASVASYTNDSSGAESSPRTSG QSGEDWRSAFDSASNGSVDRSSSHNETRSRSADSRGKRYENGDVNGGNSGSRRTPNRL PPAPPGQKY</aaseq> |
| Gene Sequence |
<dnaseqindica>8912..9138#7541..7713#6911..6978#6692..6805#6227..6384#6011..6149#5758..5814#5525..5601#5203..5341#4997..5075#4491..4618#4313..4396#3474..3593#3290..3391#3048..3195#1916..2261#1697..1814#1295..1356#718..822#496..616#346..396#83..238#caaccacatcacatcacaccagacgccaccacgccccccgagatctctcccacccccgaccagcctcgagatcccagcgcccatgtcgtcgtcggccatggaggccatggacgagctcgtccagctcgccgagtccatgcgccaggccgcctccctcctggccgacgacgacccctccgacgaggccagcccgcgccgcccctccaccttcctcaacgccgtcgcgctcggcaacgtcgtaagtgttttgcttccaccggagccgccgccgccgccgcccgcggcagctccccctctctcctccgcccgatctgactcgatccggcttgttgttgttccgtgcagggcgccggcaagtcggccgtgctcaacagcctcatcggccaccccgtgctggtgagtgtgcttcgggtttagctcgcttctctctcttctgcttttgtggcattcggtttttgtgaagctttgggtggtggttgctgtgtggtgatgcagccgacgggtgagaacggggcgacgcgggcgccgatagtggtcgacctgcagagggatccggggctgagcagcaaatccatcgtcctgcagatcgacagcaagtcgcagcaggtgtcggcaagtgagtgagatcttcccttggctagctggatctggcaatgggcgccggctggttggtgtgctgagtttggtggccctttctggtggcgttgtggcgtgcaggtgctctccgccattcgctgcaggacaggctgagcaagggggcgtccggtggatcagggaaaggccgaaacgatgagatttacctcaagctgcggacaagtacaggtttgttgctgggcttcacttttactcttacattgcacaatgttggtaagccagatgtatagtgagcatgtgccatgtgctgagtcgtgctaatgtttgcgccactgcccatactgcccctgtaattgtcggacattgatgccttgtgtattttatgtgttatagaaagctgaaatggtaagacaataagtggttgtagaaaaacggtatcaagagtgtcttctgatacagttgttagaatgtgctctcaggtttttgcaacactacaacgattgagtaccatacttagaataagcacaattttggatattgtactgctacatgtacaataatttcttctgtttgcttccctttgtttatattggtaatttttagatgatggaaatggtttacatctctggccttggccgttaggctcacaagtttatattggtaatgaattctcacttcagcatcttttgtttttttccagctcctccaataaaattggtcgatttgcctggcatagaccaacgagttatggatgattcaactgtgagtatttgcagtttcttgctcaattacacaacgatgattgaaccgcatgtagaataatccagactcctcataattaacatatgaatgtgtttatgaattggataaacttattatctaatcaatgtattggtggaaaatattccctttagaaaaggttggaagcatcatagtaatgacattgtgcatgcactttgactgagaagcattgaatgccctccatggatatattagttgcttgcacttattacataaaagagcacgaatatcttaagtatctgaaccatgtttgttgcatcttctcacaagtgttggatattgacttttctccacatttcagatcagtgaatatgctggacataatgatgcaatattgattgttgtgataccagcaatgcaagctgctgatgttgcatcatctcgagctctcagactagcgaaggatattgatccagatggtctgttataaaattcttataatcctgcccaataggcaattcataccattctctccgtagcaagtagaaactgatgtttatccttgttcatcttgttgtaggaaccagaacaataggtgttttaagtaaaattgatcaagcatctgcagatgcaaaaactgtatcttgtgttcaggctatcttgtctaacaagggtgcaccacgagcagcagctgaaattgagtgggttgctctaatagggcaatctgtctcaattgcatcggcccaagctggatcagttggttctgagaactcactggaaactgcctggcaggctgaagcggagacactcaaatccatcctaactggagctcctcgaagtaagctagggagaattgctctcgtggataccattgctaagcagatacgtaaaaggatgaaaattcggctacctaaccttttgtccgggtaagtgcattgcccttttttattatttttattttcctaaataattgaactttattttatttttaaagtaaactaagcacaaccccaacttttaagaaaactgaaacttagatggtcttggaatttggatgtcaaaacatctttcacatggaatttggatgtcaaaacatctttcacatttcatttcactaagatttcccttctacagtatcgttgtagttaaaagtaaacaatatgcatgtagcacaaattgtccaggttctatgtcgcaatcatatttcatgtatctagatatcccctccgcagtaccattattggagcttgtaccttctcttgtgtttatgcacctgtggaatcaagttgtttttttgtcagcacttccaagctccaatttcctatttgacctagcttggtacatttagatgatgtcaaacatggttatctactcatttcttctgaacttctgtgcatttggccaatctttttgcatctgcaactacatacttacaacacacatgcgtccatgacaagagaaatgccaagtataaaagatgtgtgaacagtttctacttggctacaaaatgtcaagcttaaactaccttttaaactccaaatttaaatttatgtagttcatgaacttttccgcggcataaatgacccttatttgatctatcaatgtaatgttatcatcacacaatggatcatggacactctggccttctgtaaaataagttgattttaatttcttgttaaattgctgatatatgtaccttgctacaattgcaggcttcaggggaagtctcagatagtgcaaaatgaacttgcaaggttgggagaacagatggtatcaagcgctgaaggaaccagggctgttgctttggagctttgccgtgaattcgaagacaagtttcttgcccatgttacttctggtgaggttagtgataagctcaagtatggtctttatatataccttaattagtatgtgccaaatgaaatacctgattacaaggctgttattcaatcaaaaggggtctggttggaaaattgttgcaagctttgaggggaagtttccagataggatcaaacagcttcctttggacaggcattttgatattaacaatgtcaaaagggtaaattcaaaagcccttctagaattaattttagagtgggcacactttgcttatgatgattactgttatctttatattctagattgtcctggaagccgatggttatcaaccatatttgatatctccagagaaaggtttaaaatccttaataaaaggagtacttgaaatggcaaaggagccatcacggctgtgtgttgaagaggtatgtcttttttgatcccctatatgtataatttactaactcacttaaaaaggtaaaatatgaatagttgagatgcaatttcatttttaccctttggatgaatgtcagaagtggattttggtggctatatttatcctgctaattttaaactttgtaacttccaatgaagtttatgatgcattaattaatcattttgttactgtgcatgggtaggcacttgccagcatagttattaagaccagatcgatgattgaacatctgatgggctcggttcagtggtttactggtctaaccggttagatcgccgctttgatccggtttaaatagacatatgctgcactataatcacaacagctgtcatagcccaacggtggagtatttttggtgttgtagcttggtcacgggttcgaatcccagtcttcacccttttttccctcaatttttgtgttactcgcatgcatggctgacgagtccactccacttgacaggcccacgtgggcagtcaccggtttatagccgacccaaaagatagagaaccgttcagtttgatcaggtgtttaccggtccgattgcgcactggtcttttaatcgaaccaggccgctaagagtgttggttccggtttattccgggtgaaccgccggtccggtctgcttctaataactatgcttgccagtgtagtgtcaatatgtaaactaaatacattttgtcaatatactaggtacaccgtgtattattggacatagtaaatgcttctgcaaatgctacaccaggacttggaagatatcctccattcaaacgcgaggtaccactttgttctatttcaccaacttacaatgcattctacttccctttcacctgcttcctgagcacaacatcccatcatctcttttctgaaggtcgttgaaattgcaaccaatgcattggatgtcttcaaaagtgatgcaaaaaagatggtagttgcacttgttgatatggagcgtgcctttgtcccaccacaacacttcatccgtttagtacaaagaaggtatgtcaggctcttaattgaataactttacagttggtttggtttcaatctgctctaatgtaacttcagtaaataatttccaccacaaaagctgatagggaagaataacattgacttgtagtcttatagaaatagcatcaactgcctaaatccaaatggaaaaaaggccggcatattttctgtacagagtgatgtgcccacgaagtataccacttcattacaacttctttgttagagaaatatagtttcatcccttagttgaagtggataatgtttccatactagtgtctgtctatgagctgaaagacctttacgatgttttcatgatttataatagcattgttcaatccttatatttggtttgatatgacattgcagaatggaaaggcaacgtcgtgaggatgaggtgaaaaacaggtcatctaagaaagcccaagatgcagaacagtccaacaaggtatgatttctgcctcttgcaccttgcacaaatgtgcttactgaaaggtcatgctaaaagtaatgactgcaagattcctttttcttgcgtttgtttggccctgaacattggttgccttctgtattagggctcaggcacaggatctgagcaatctggtggtgccttgaaatcgttgaaagaaaaattcagtcagcaagacaaagataaagatgcaaaagagggaccaaatttgcaggttgctgggcctggtggtgaaataactgcaggtataatgatgcgctgatgcaccataggttatcattcctgtagtttttttttatttactctggctcttcacagctagtgtaatctttcatttgtagttacaagtaactgcagatggttttggttaattctgtatcctggtttggcttttttgcatataagatgatttcttcttttctactcaggctaccttttgaagaaaagtgcaaaaaataatgaatggagcaaaagatggtttgtcctaaatgagaagagtggaaaggttaatatatctcgtacactgatgtactggtgttccccatatttgatttttctgaataataacttatgataatcttgtcatttgctgccgattttcaaatgtcctttatttagttaagaatttggtgtcatttactgttttttttttcatgtccagcttgggtacaccaagaaacaagaggagagacattttcgaggtgttattgtcctggaggtgtgcacttaactttttatacttctgtgttcatgctcaacagtgatctacgatactttagtttacaccttagacttgtaattttacagtccttgtggttccagttcacattcgatgattcaaactaaaaaagttgtgtgcacaactatgagagatgagatatgaacttaataacacaatttgctgcgtgagtcaggaatgtaatctggaagagatagaagaggaagagctttccaagagtttgaaggattcaaagaaggccaatggggcagagaaaggcccaagtcttgtatttaagattactaacagagttgcctacaaaactgtgctgaaatgttagtgtctctaaacgttatatgctgaggttttaaatgctaattatgttgcttaaagtgtgaatttcatgttgcagctcatagtgctgttatactgaaggccgagactattgctgacaaggttgaatggatgaagaagataagaggtgtcattcaaagcaaagggggttctgtgaagggtttaaatactcctgagggtggttccatgaggcaaagccattctgatgggtcccttgtatgttccttatttgacattttttatgctattgtcattgtaaagcttttaacatctacaattctgagttattgcctaagctatttttaccctctcttcagtggatgcttgtggcaagttttctactttaccagtgaccatgtttatcatttgaatttctctaagaaattaaagccacttgttttgtgcaactatcttaactgaacactcatatcaacctgttccactttcccacggccatgattattttttgaatgtgtcaaacacaaattttgaattgcctgtgacacaattactctcccttaaggatacgatggcccggaagcctgctgatcctgaagaagaacttcggtggatgtctcaagaagttcgtggttatgtagaggctgttttgaacagtttggcagcaaatgttccaaaggtttacatttgaacctcacaattgtttcaacagtcatactattttttaaactcaatttaacatggtcatagttgcaattgttattattgtctttttcatgatcaggcaatcgtactttgccaagtggagaaagcaaaggaagatatgctaaatcagctctacagcaaaataaggtttgatgcgtattctttctttgtatttgtgcattgcataaggtttcgcttctttctttttctccactaaatggacatacccctagatggaactgcattgaccttaagtatagatattgtctttttttttttccttttcaactcagttttctcttgttaacacgccactgttaacacttggatcagttgttaacaagtgaaaactgccaacacaaagactttggtgagcacctgcagatatttcactaaatggatatacccttagttttcctttttcaacttaaaggacttactgcaatgtctgcaggcgctactgaacattgttcgcataactcatattttatttattatttttatttctattcatgacattccttcacatggcatatcacaagtagatacatgacatatggtgcactaaatggtagaaattccattaagtaaagcacacctgaaaaaataaaactgttacacgctccacatacatgttaagtgtttatttcatagtcattctgttccttttgtaacttgctgctaatcttgttacaactctcatcattagtgctcaaaccaatgcaaagattgaagaacttctccaagaggaccacaatgctaaacgtagacgggagaagtaccaaaaacaatcatctctattgtcaaagcttactcgtcagcttagtatccatgacaatagagcttctgttgcatcgtataccaatgatagttctggagctggtaagttggctacatttcaaatacttagttgatagtagcaaatgcaatagttttgtgtgcttgcaaatttgtccatttcttttgtaggtgtgttttcttttcttctgaactttaattggttgttttcccatcataatattgagttttcctagtctattttctgcaagccaatggaatttactacgatggccatgtttgaaaccttgttgaattacaactcatctgatcatgaccataattgttctgccacatgaacaagcacttcaggacagcacgagtacatatgatggttcaactttagcagaatttgtgtgatgacaacttagcatgaaaattaagataactaaaacttagcaagtttgctttgctgcctcttcatctagggaagtattaagtagaacaccaccaatttagtgcaatcactgaaaccatcaccaaacaaattgtgtacaaatttgctcaaaatcatatgcaagggaagtgatactatattatacaacctaaatttcgatatctcaatatcataatcaatttcgtttggaagatcaaaatttgaaatttagagatagtatgctaagggtattagcacgcatcttcatgttttgcatgatcatgactgtcagcttcaaaacttcagatctcattagttcacaaacaagcctgaatactgcaatatgataggttctcatactaggtgagggttttatctaactattctgttgccattaaggttgggtcgatgatgacattgcatgcatcattttgccaaaacataagagggtaatgctggcctaggttcatgggtaacaacatcatcttggtaatctggtttatattcatggcccatgtttgccagctattcttgtcatagtttgggcattgcaattattggaaattttaatggcacaagtctgcaaccatgatttgtaaattttaacagaaatgacgataactgaacaagataaatgacctagctgatatctagctaataacaactgagcaagacagaacacttgctgttcacatttaaattttcctgcatattctagaagtgtctactatctgtgactctgtatatggattgagactgcgtagatataatggtgaatgattttgtattttcgttcatatttctttggctacctggtaggaaatatcaagcacttaatcctgactaaacaaaacaaatcatttgcagagagtagcccacggacctctggccagtcaggtgaggactggaggtctgcgttcgattctgcatcaaatggctctgttgatcgatccagttcacacaatgaaacaaggtcaagaagtgctgacagccgtggcaaacgctatgaaaatggggacgtgaatggtggtaactctggcagccgacgcacaccaaaccgtttgccaccagcacctccagggcaaaaatattaagcatgttgatcatcatccgccaacatcatattttcatgctaggtatgaagtacaacggaattgatgcatcgagaaccatttgattcagggggatggcatgcatgggctcgaagaatagagctgacgagagatttgcatgaatggtgtgtatccagaggatctcagttgttcatagaaatatactcctatagtttatctacagttgtttcacgatcattttggcatattgatctgtctgaggctcgctcagcctgtgggtgtgggattttgttaccacagatcggttgatcttggtcttgtactctgctgttgtaattcttccatcaacttggcaatgtattatttcttccattcttttt</dnaseqindica> 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