Difference between revisions of "Os07g0596300"
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===Expression=== | ===Expression=== | ||
| − | FH5/RMD encodes a formin-like protein consisting of an | + | FH5/RMD encodes a formin-like protein consisting of an N-terminal phosphatase tensin (PTEN)-like domain, an FH1 domain, and an FH2 domain. |
| − | N-terminal phosphatase tensin (PTEN)-like domain, an FH1 domain, and an FH2 domain. | + | FH5/RMD is ubiquitously expressed in rice tissues, and its protein localization to the chloroplast surface is mediated by the PTEN domain. |
===Mutation=== | ===Mutation=== | ||
Revision as of 14:11, 6 June 2014
Please input one-sentence summary here.
Contents
Annotated Information
Function
formin homology 5 (FH5), a type II formin mutated in rice morphology determinant (rmd), plays a crucial role in determining rice (Oryza sativa) morphology.
Expression
FH5/RMD encodes a formin-like protein consisting of an N-terminal phosphatase tensin (PTEN)-like domain, an FH1 domain, and an FH2 domain. FH5/RMD is ubiquitously expressed in rice tissues, and its protein localization to the chloroplast surface is mediated by the PTEN domain.
Mutation
The rmd mutants display a bending growth pattern in seedlings, are stunted as adult plants, and have aberrant inflorescence (panicle) and seed shape. Cytological analysis showed that rmd mutants have severe cell elongation defects and abnormal microtubule and microfilament arrays.
Labs working on this gene
Please input related labs here.
References
Please input cited references here.
Structured Information
| Gene Name |
Os07g0596300 |
|---|---|
| Description |
Actin-binding FH2 domain containing protein |
| Version |
NM_001066706.1 GI:115473144 GeneID:4343793 |
| Length |
6892 bp |
| Definition |
Oryza sativa Japonica Group Os07g0596300, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 7:24926636..24933527 |
| Sequence Coding Region |
24927271..24927363,24927449..24927588,24927919..24927985,24928076..24928144,24928599..24928715 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008400:24926636..24933527 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008400:24926636..24933527 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgtcttttggagcacaaacacgaacttttgtccctcctcctccaccccctcctccacctcctaggtcaggtgttggtgggaatactccacctgcacctcctcccccgcctctaaggtcaactgttcctgctatttctccacctccgccaccacctcctccaccactgaaaccaagttctggtgctccatgcccacccccacctccaccgccaccgccacctccccctccctcagccccatcctctcgagcattttcaagtgctcctccaccgccaccaccaccgcccttgttacgatccgttccacctcctcctccaccaccgccaatctcacactctaatgctccaccaccacctccacttccagctgcacgctttaatgctccgccaccgcccccaccacctccaacaacacattttaatgcccctcctccaccgccaccaccgcctatcacacgttcaggagcaccaccttccccacctccaccccctagccctccacctccaccaccacctccaggtgcacgtccaggtcctccacctcctccaccacctccaggtgctcgcccaggtcctccaccacctccaccccctccaggtggtcgtccaagtgctccacctcttcctcctccaggtggccgtgcaagtgctccacctcctccaccccctccaagcacacgtcttggagctccacctcccccgccaccacctggagctggtgggcgagcacctccaccaccgcctgcccctgggggaaggctcggtggtcctcccccacctccacctcctggtggacgtgcaccacctcctcctagaggaccaggagcaccaccacctccaggaggcaatcctagtagtttaataggtagagggcgtggggtggtacgtgcttcaggatcaggttttggggctgcagctgcacgtaaatcaactttaaagccattacattggatcaaggtgactagagctttgcaaggaagtctatgggaagaattacagcgaaatgatgactcacagagtgtttcggagtttgatttgtcagagctggaaagcctttttccagcagctgttccaaaaccgaatgacagctctaaatctgattcacgtagaaaatcgcttggttcaaagccagaaaaagttcacctaattgagttgaggagggcaaacaacacagagatcatgctgacaaaagtgaagatgccactgccagatttggtgagtgcggctttggcactggaccaatctaccttggatgttgatcaagtggagaatctcataaagttctgtcctacaaaagaagaaatggaacttctcaagaattacactggagataaggaaaatctgggtaaatgcgaacagttcttcctagaattgatgaaagtgccacgaatggagtcaaaactgcgggtgttctccttcaagatccagtttggttcgcaagtcgcagatcttcgaaaaagtttgaacaccatagactcttcatgtgatgagattcgaagttctctcaagttaaaagaaatcatgaagaaaattctcctccttgggaatacattgaaccagggtactgctagaggtgctgcagttggcttccggttggacagtcttctaaaactaacagatacccgagcaacaaataataaaatgacacttatgcactacctctgcaaggtacttgctgcaaaatcatcacagcttctggacttctacatggatcttgttagtttagaagctacatcaaagatacaactaaaaatgctggcagaagaaatgcaagcggttagtaaagggctggaaaaggttcagctcgagtataatgcttcagaaagtgatggtccagtatcagagatttttcgtgagaaactgaaagaattcactgacaatgctggagctgatgtgcaatctttgtcttcattattttctgaagtgggaaaaaaggctgatgcactgattaaatatttcggcgaagatcctgtacgctgcccttttgagcaagttatctccaccctcttaacatttgtaacaatgtttcggaaagcacatgaagagaaccgcaagcaagctgagctcgataagaaaagggctgaaaaagaggcagaagcagaaaagtctaaagcacagttggctagtaaaaatgactctaaaccatcaaatccaagccggcaagtgaaacaaacgccagatactaaaacaagagctgcaagcagacgaggaaaagatgtaggttga</cdnaseq> |
| Protein Sequence |
<aaseq>MSFGAQTRTFVPPPPPPPPPPRSGVGGNTPPAPPPPPLRSTVPA ISPPPPPPPPPLKPSSGAPCPPPPPPPPPPPPPSAPSSRAFSSAPPPPPPPPLLRSVP PPPPPPPISHSNAPPPPPLPAARFNAPPPPPPPPTTHFNAPPPPPPPPITRSGAPPSP PPPPSPPPPPPPPGARPGPPPPPPPPGARPGPPPPPPPPGGRPSAPPLPPPGGRASAP PPPPPPSTRLGAPPPPPPPGAGGRAPPPPPAPGGRLGGPPPPPPPGGRAPPPPRGPGA PPPPGGNPSSLIGRGRGVVRASGSGFGAAAARKSTLKPLHWIKVTRALQGSLWEELQR NDDSQSVSEFDLSELESLFPAAVPKPNDSSKSDSRRKSLGSKPEKVHLIELRRANNTE IMLTKVKMPLPDLVSAALALDQSTLDVDQVENLIKFCPTKEEMELLKNYTGDKENLGK CEQFFLELMKVPRMESKLRVFSFKIQFGSQVADLRKSLNTIDSSCDEIRSSLKLKEIM KKILLLGNTLNQGTARGAAVGFRLDSLLKLTDTRATNNKMTLMHYLCKVLAAKSSQLL DFYMDLVSLEATSKIQLKMLAEEMQAVSKGLEKVQLEYNASESDGPVSEIFREKLKEF TDNAGADVQSLSSLFSEVGKKADALIKYFGEDPVRCPFEQVISTLLTFVTMFRKAHEE NRKQAELDKKRAEKEAEAEKSKAQLASKNDSKPSNPSRQVKQTPDTKTRAASRRGKDV G</aaseq> |
| Gene Sequence |
<dnaseqindica>6165..6257#5940..6079#5543..5609#5384..5452#4813..4929#4642..4713#4153..4247#3336..3417#3101..3232#1986..2027#1815..1913#1664..1735#1324..1450#42..1060#gcttgtcaagcattcctcctcctccccctccacctccacttatgtcttttggagcacaaacacgaacttttgtccctcctcctccaccccctcctccacctcctaggtcaggtgttggtgggaatactccacctgcacctcctcccccgcctctaaggtcaactgttcctgctatttctccacctccgccaccacctcctccaccactgaaaccaagttctggtgctccatgcccacccccacctccaccgccaccgccacctccccctccctcagccccatcctctcgagcattttcaagtgctcctccaccgccaccaccaccgcccttgttacgatccgttccacctcctcctccaccaccgccaatctcacactctaatgctccaccaccacctccacttccagctgcacgctttaatgctccgccaccgcccccaccacctccaacaacacattttaatgcccctcctccaccgccaccaccgcctatcacacgttcaggagcaccaccttccccacctccaccccctagccctccacctccaccaccacctccaggtgcacgtccaggtcctccacctcctccaccacctccaggtgctcgcccaggtcctccaccacctccaccccctccaggtggtcgtccaagtgctccacctcttcctcctccaggtggccgtgcaagtgctccacctcctccaccccctccaagcacacgtcttggagctccacctcccccgccaccacctggagctggtgggcgagcacctccaccaccgcctgcccctgggggaaggctcggtggtcctcccccacctccacctcctggtggacgtgcaccacctcctcctagaggaccaggagcaccaccacctccaggaggcaatcctagtagtttaataggtagagggcgtggggtggtacgtgcttcaggatcaggttttggggctgcagctgcacgtaaatcaactttaaagccattacattggatcaaggtgactagagctttgcaaggaagtctatgggaagaattacagcgaaatgatgactcacagaggtatatccttttgattaaaattcttcctccatttgaccatgcttattgatatatgcacataaatttcaatgatgtgattggctgattgctgtaaggcttcatccaggatttgtaaataatttggtgtcatgattgtagcattgaattttctacaattcagttgctaataatctcgtacaatctactccacaaagactggctcaatatttgtgatgcttttttactaggttttgccttaatgtttgtcaatttcttttctgcagtgtttcggagtttgatttgtcagagctggaaagcctttttccagcagctgttccaaaaccgaatgacagctctaaatctgattcacgtagaaaatcgcttggttcaaagccagaaaaagttcacctagtaagtacatgctaattttaatttcctttctaatttgtatcagtgatcaaggtcagaaagacactagatttgttggacatttaagttatgacaaatgtgttacatgatctcattatcatatcacaaaactatgcaaacagtctcaagaacctgtatttattagactttgtaaatgaccatgttacaatagtcttaacacttttatgtgattagattgagttgaggagggcaaacaacacagagatcatgctgacaaaagtgaagatgccactgccagatttggtggtaattatcttataaaacaagcaaagataatggtaacatgattgattttttatatcttaatggcttaaattttctctagagtgcggctttggcactggaccaatctaccttggatgttgatcaagtggagaatctcataaagttctgtcctacaaaagaagaaatggaacttctcaaggtaatacaatgtttggccttgttgtgatctcatctgaaaactatgttggcttactgtctcgtttttttccagaattacactggagataaggaaaatctgggtaaatgcgaacaggtaatggttatttgccatctagtcatctagtggaattagaatatttgcccattgttactggaattagaatatttgcccattgtgctttattatatattagtcctgtcagcacacataaaaacacattttttgggtcttaattggagattttggcaattttagaatgaaacacaatggtcagagtttaaatgtacataaaacagtcttctggttcctctgcttgataactaatatccctgtttttaacatcaactcaaaacagggtggatactgtgtagaagaggccgtatgatatggctcgataataaactggcaatttggcataggagaaaaatggcactatagctagagaaaagctgaacacagcagatatagatggcatagtgagcagaggctaaatttttgttaagagtgtaggaaatagggtggggggaaactttgtttagctcttacttctaaaatgaatgggcatggtttaaggataactggcacgagagtataaaggtgcacaatagaagaatggaacatctacagagatagatggaaggagcagaggctaaattcatgaacgaatctcctacctcttaaatagataagcctaagaaatagtgctttggataagacgacaactaaataacttctactctctccgtttcatattataagtcgctttgacttttttcctagtcaaacttctttaggtttgatcaagtttatagaaaaatttagcaacatctctaacaccaaattagtttcattaaatgtaacattgaatatattttgataatattttttttgtgttgaagatgttgctatatttttctataaacttagtcaaactaaagtcaaatcgacttataatatgaaacggagggagtaccaatcaaccaattagttatttgtttattttcgttgcttggccttgcaagtatttgatggcctggtcagtccacattcactaaagacattaccttttacattttgagtttttaaagcaaaatggtctcaggtgttatacgtttatgccagcttggtagatccgtatgcattaaacaattattttcctgctgcagttcttcctagaattgatgaaagtgccacgaatggagtcaaaactgcgggtgttctccttcaagatccagtttggttcgcaagtcgcagatcttcgaaaaagtttgaacaccatagactcttcatgtgatgaggttcatttataatcgggattagttttttagcaatcaatattgcttcttatgtaatttatactaagtcgaattcctgttttctaaaaaatatctgcatcatcagattcgaagttctctcaagttaaaagaaatcatgaagaaaattctcctccttgggaatacattgaaccagggtactgctagaggtacaacaactgcattttctctgttacactcaatttagttggtcacattatctttagttattcgttggcatatgaaatgcagctgcatttatgtctaccagctctgcaattttactggcttcttgctaggcagaaatgaagagattgacattgaagttttcctgcaacatgtttaatctctaaaataggaatctttcccacaagttcttttttctttttcttttgttgtttgtttgtggtgtatttttaaaatcattgtgaggaagtgggggcatgtgtgttgagtcttgtaaatattctctccttaatgcaatgatatgcagttctcctgcatatttgagaaaaaaaaataggcacggtgtttttgttggaacaaaaagattgtgcatcctaggaagaatgaataatcaatttaggctgataattcctccctttcttttggagtataggcaacatcctagtttctgaaaaacccatagtaatgcgaccgatgtttctaatttaaatcaattatcaccaccacaaatacaggagtatgtagggctactgatggcttttctcgttcttctagagttcataatgataggttacacatttggtaacattcaaattgtttgttagttcagttgtttctttacactggggcatccttttgattttctttagttaattggttatatattagactattagtactgttcttggatagtttcacatttgttggtttgcttacaggtgctgcagttggcttccggttggacagtcttctaaaactaacagatacccgagcaacaaataataaaatgacacttatgcactacctctgcaaggtacgccttaaacaattcctgttccgctaggttgtcgaaagtgaacatggtagcttttcaccaatagtttacctgcttaactgtaaatcaagtttggactgcatcaaataattttattcaaatcaggaccctgaagtcaatttatttgatggtggaaactgtgagttcatgatttgcatgtcatgttgtaagcaaatatatatacaatgatgcacttccacttaatttattctgtaacaaggttatattactatattctacgatgacttatagtttgagtatctggccataacttctttatagtcctggttaagttcacatttgcttgagttgaaatgattttacatcagtatctatcttgcgtacaccctaacaaaagaaaatgtaatatcaggtacttgctgcaaaatcatcacagcttctggacttctacatggatcttgttagtttagaagctacatcaaaggtttgagttttcttttactattctatcaatcttgtagcatatataatttatttactttcgatatgtatatgctgttctaatcggtgttttcctgaacagatacaactaaaaatgctggcagaagaaatgcaagcggttagtaaagggctggaaaaggttcagctcgagtataatgcttcagaaagtgatggtccagtatcagagatttttcgtgaggtcaaggatctaccccattttgacttatttctgacgtatttaaatattaagttggttccttttagtggattacactacctgctatgtggactaaaattagtaatttcttccccagaaattctacaaaaacgttatccaggcttgttaacagttttttcatgtgcttgttttatgattgtcatctggatgtgcttctcagacagcattacatcaattttactgggacatgcccaaatgagaatctaatatacaatagtaaaagagcctctattggtgatacacctgttactcaagacagatgtacacgtctgatatatatacatgggttactgataaacccgttgtttcaatcaatctgacatgtgaacctgatttaaaagttactttctatttgtgtaaagctgaagagtaaaaatcccgttagttctaaatcggtattgtttgcactgttcagaaactgaaagaattcactgacaatgctggagctgatgtgcaatctttgtcttcattattttctgaagtggtatgtttttgttttcttatatgaagaggaatgcatgctattaacccacattccttctggccttgattatttgttgcattattttgtcagggaaaaaaggctgatgcactgattaaatatttcggcgaagatcctgtacgctgcccttttgagcaaggtaagaatttttatgatcaatgtgacttatttctaaggttgtgcattcagcattttctttttccgagtacctgtcaaggatcaagatactgtcagtcgtgtgagcaccccccactataagcacaaacacattatcatgaaaatcattcttatttaaaatatttcaacccataaatatgtaataccttgcaaagaaacaatttaggataaatcattttctgtagtttgcagctgattgagcatatcttatttctgcattttttatcatcaacatatgtgtttgcttgttttggtatgttgcttaactcttatgttgatcatgatgttgcagttatctccaccctcttaacatttgtaacaatgtttcggaaagcacatgaagagaaccgcaagcaagctgagctcgataagaaaagggctgaaaaagaggcagaagcagaaaagtctaaagcacagttggctagtaaaaatgtattgatccttgacctgtatctttggcaacttcagccaacctcttatatccatcgtatttataaaattcaaaatctgctcacaggactctaaaccatcaaatccaagccggcaagtgaaacaaacgccagatactaaaacaagagctgcaagcagacgaggaaaagatgtaggttgatctccacgaccaactctgttgttgcgcttatgatctgcatgctgggcgaatgcatgacctgctcgatgcacggggagggcaagaaaagttgtgtaaatgatgcagccatcaatggaaacagcatggctgcaccatagcaactgtacatgacgccctttacggtaatgccacatgtgtctgttgcttaacaatacattgataaatgaatcgtataattttctgacaagtttttttttttcttattgcagttcgcactagcgatggccggtttttttctcttcggccagcagggccgcccagtggcaacttctgactgctgtaaagaactaacactaacagcaaagctaacatcattcgttttttcctttgttttttatgttacttgtccattctttctaaccccagtggccaagtgcagccaatgcttcaggagtagagcctcgtagtatcgtagtaggtaggtagaaattgtacaaataggaacagggaaagggtagggaaaccatgtggggcggagaaattgtagctgggatctatacgagatgtaaacatgcgtgtgcttcacgaatatttttttttgtagtgaatgtaccaaggttttcataattagtgaatgcagcagcttttccatgatc</dnaseqindica> 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