Difference between revisions of "Os10g0536100"
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1.CHOONG-HWAN RYU1 ,Department of Life Science and Functional Genomic Center, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea | 1.CHOONG-HWAN RYU1 ,Department of Life Science and Functional Genomic Center, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea | ||
2.SOON JU PARK2&CHANG-DEOK HAN, Division of Applied Life Science (BK21 Program), Plant Molecular Biology and Biotechnology Research Center (PMBBRC), Gyeongsang National University, Jinju 660-701, Korea | 2.SOON JU PARK2&CHANG-DEOK HAN, Division of Applied Life Science (BK21 Program), Plant Molecular Biology and Biotechnology Research Center (PMBBRC), Gyeongsang National University, Jinju 660-701, Korea | ||
Revision as of 14:50, 6 June 2014
Please input one-sentence summary here.
Contents
Annotated Information
Function
OsMADS50 and OsMADS56 , which is highly homologous to Arabidopsis SOC1, are affected by the circadian clock. Under long days, OsMADS50 serves as a flowering activator by controlling various floral regulators such as OsMADS1, OsMADS14, OsMADS15, OsMADS18 and Hd3a. But OsMADS50 and OsMADS56 function antagonistically in regulating LD-dependent flowering by controlling expression of OsLFL1 and Ehd1. MATERIALS. So OsMADS56 is an LD-specific floral repressor.OsMADS50 and OsMADS56 form a complex that regulates downstream target genes in order to regulate the Rice's flowering time.
Expression
(1)Real-time RT-PCR analyses indicates that OsMADS56 transcript levels were low at the seedling stage
but gradually increased to a maximum at 4 weeks after
germination as the observation made by CHOONG-HWAN RYU1 etc. (fig.3b)
(2)OsMADS56 and OsMADS50 control the Rice's flowering time through regulating their communal downstream genes OsLFL1-Ehd1 .The expression patterns of Ehd1, Hd3a RFT1 and OsLFL1 reveal it.(fig3c-f)
(3)The mRNA levels of OsMADS50 and OsMADS56 along with other flowering regulators
such as Ehd1, Hd1 reveals that OsMADS50 and OsMADS56 also have daily rhythms.(fig9) The transcript levels of
them is similar to that of Ehd1.
(4)OsMADS56 is located on chromosome 10, and consists of eight exons that encode a typical MIKC-type MADS-box protein.
Evolution
Please input evolution information here.
interference
In those Ehd1-RNAi plants, mRNA levels of both OsMADS56 and OsMADS50 were unchanged,indicating that OsMADS50 and OsMADS56 are upstream of Ehd1.Transcript levels of OsMADS56 were not altered in OsID1-RNAi plants , indicating that OsMADS56 is not hypostatic to OsID1. The level of Hd1 transcript was not affected in osmads50mutant and 56OX transgenic plants. T-DNA insertional knockdown plants for Hd1 reveals that mRNA levels of these two MADS genes in the mutants were unaltered under both SD and LD conditions,thus the LD-flowering pathway mediated by these two MADS genes is independent of Hd1. You can also add sub-section(s) at will.
Labs working on this gene
1.CHOONG-HWAN RYU1 ,Department of Life Science and Functional Genomic Center, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea 2.SOON JU PARK2&CHANG-DEOK HAN, Division of Applied Life Science (BK21 Program), Plant Molecular Biology and Biotechnology Research Center (PMBBRC), Gyeongsang National University, Jinju 660-701, Korea 3.Nam J,Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University University Park, PA 16802, USA 4.Lee S, National Research Laboratory of Plant Functional Genomics, Division of Molecular and Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang 790-784, Korea 5.Kaufmann, Melzer & Theissen , Friedrich-Schiller-Universität Jena, Lehrstuhl für Genetik, Philosophenweg 12, D-07743 Jena, Germany. 6.Takada S. & Goto K,Research Institute for Biological Sciences, Okayama 716-1241, Japan
References
1. Choong-Hwan Ryu;Shinyoung Lee;Lae-Hyeon Cho;Song Lim Kim;Yang-Seok Lee;Sang Chul Choi;Hee Joong Jeong;Jakyung Yi;Soon Ju Park;Chang-Deok Han;Gynheung An OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice Plant, Cell & Environment, 2009, 32(10): 1412-1427 2. Jongmin Nam;Kerstin Kaufmann;Günter Theißen;Masatoshi Nei A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes Nucleic Acids Research, 2005, 33(2): e12 3.Peng L.T., Shi Z.Y., Li L., Shen G.Z. & Zhang J.L. (2007) Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter. Biochemical & Biophysical Research Communications 360, 251–256. 4.Arora R., Agarwal P., Ray S., Singh A.K., Singh V.P., Tyagi A.K. & Kappor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8, 242.
Structured Information
| Gene Name |
Os10g0536100 |
|---|---|
| Description |
Transcription factor MADS56 |
| Version |
NM_001071703.1 GI:115483149 GeneID:4349237 |
| Length |
10441 bp |
| Definition |
Oryza sativa Japonica Group Os10g0536100, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 10:21318476..21328916 |
| Sequence Coding Region |
21318861..21319045,21325700..21325778,21327505..21327566,21327666..21327765,21327903..21327944 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008403:21318476..21328916 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008403:21318476..21328916 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccagcctacagaaaaccatcgaccgctataaagcatacacaaaggatcatgtcaacaataagacaattcaacaagatatccagcaagtcaaagatgatactttaggcttggccaagaaacttgaagctcttgatgagtccagacggaaaatattgggagaaaatttagaaggattctctattgaagaactgcgtggtctagaaatgaaacttgagaagagcctccacaagataagactaaagaagaccgagcttctggagcagcagatagccaagctgaaagagaaggagcggactttgcttaaagacaacgaaaatttacgcggaaagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttga</cdnaseq> |
| Protein Sequence |
<aaseq>MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVA LIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLE ALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL LKDNENLRGKHRNLEAAALVANHMTTTTAPAAWPRDVPMTSSTAGAMDVETDLYIGLP GTERSSNRSETG</aaseq> |
| Gene Sequence |
<dnaseqindica>386..570#7225..7303#9030..9091#9191..9290#9428..9469#9585..9626#9939..10042#10052..10130#cgccctcgtctcgtctcgtctctccactcccccacctcccatccgctactgctagtactactactacccggcctctcgccttctcgcgcggccgcgatttccgttcgcaaatccgcacccacggcggcgcgaggtcgccgtcgtcgtcgagccatttcgggtgagagggggggtctccggtttttctcagatctgtccacttttgtccagttttgatctggtgatttaatatactatttttcacttctggtggtttgcggcgacgcgtgtgcaggggggtagtttataagggcttgcgcgaggagggggaggagtagcgggtagcggcggctcgagtcgagtcgtcgtcgtcgtcggcggcggcggtcgagagagatcgggatcgatggtgcgggggaggacggagctgaagcggattgagaacccgacgagccggcaggtgaccttctccaagcgccggaatggcctcctcaagaaggcgttcgagctctccgtcctctgcgacgccgaggtcgccctcatcgtcttctccccccgcggccgcctctacgagttcgccagcgcccccaggtataccttcttctcgttctcggcaagttctcgccggaaattattctctcgctcgtttcgccctcgtcgtgctgctgcatcaaatgcaaatgcgatttcattctctctctctctctctgtggtaatcgggtgatttttgtggtttggggggtttgaggattcggctgttgggattgcttgttcgtcagagtttgaattcctgcccttaattccgtcgaacaaaaatgggttctctgttcggatttggcacctgcggatttggccaccgctgctgcgacgacgaagacgacggcgacggcgaccgccggccacacacactactagtagcctactagttcgtcttgcttctcacttgctattattgttattattggaagctgtgaactcctgtagaagttgaccccttctctccccctaaatatctgtacggccctggagaccggatggatatgcccacacctcagcactctctcacagtcaccaccagttgcctgtagtatctcttcttcattcatcttcttcttcctctcacatgttaacaactgttccatggagcatgtccacgagctctggattgattctctggcgcgtctctgtgcatcttccttccccattcgtcgattcttgttctcgatccgcgggaaaattgacgattaaaggaggctcctgacctctgaataaaatcaaggacaaaaacgtacaagaaggcagaggtaataaacccaagatagccaatatacaaagaaaaaccaaagtaaatggcagccaatgggaggaaggaggccggccggcgtgcgtggccagtaattgcggggtaggaagaaggctgcgagcctgcgagcgtgcgagactacaaatggagaaacaagctaatgtgacatccggtcagtgagatgagagatcattgggcgcctacctgcaccctctctctctctctctcgatccacaccactgcactgctcccctctcgatcgtacactggctgatgagctagccaagttgatttctctcgcaaaacgtaccacggattggtcgcatcagctccgttcgtcgagggtatggtgtgggggtatctttccatcatacacagtatgacgttggccacagtacatagcatgcgatatggctgtttctgaatattttttcagttttcagcaggtccgaatttgttaggtggaaccgtgatttatatatttctcccctcttccttgtggatatagtactcgtattgtgtatcttactcctagttctcttgcacccactccagctggagagtggagagagtggagagtacgtaccttatctggcgcacactgtactataatccttatattttggtgatcaggtgcaccgtttattatagattaatcatcatctcttagacatggcttgttgcaccttaatatccatctctttatcaggcttatatgtctacggcagtgaaaaagcgttgccagttaattcattgtcgtgcatgtagtttccaaaccatagtctagggaacactcaatgttgttccatgatattaagtgatgttaagtactccataacttaattagtactccatgccaatactcgacaacataatatttccatcacacttcatatatatgtatgctctccctctttctcaattaggaagatctatctagaaaattcttgagtttgcaagctatgatatgcaacgaactttcttctaatgtaagtgcaaaactatggattgtcattcattacttacgttacttcttaataaacattatcaagaagctagattgtagagcatgtaaagctgagtggaaaaggagttttggtaagcatgtgattgacatgtcttataggtcgtcgattgatctgcccaaacaacagtacaaatgaagttaattctactgtgaatagcatgtgataactcgcaatccgtagaatgctttggctttaaaacaataattttaagagtgtgagcaatgcttatgttacttcatcagattatcgtgtgccttaattcttatctgttgatcatatttagtactcctcctacccataaatatatgaacacttgaagcatttaaaatttatccacaaatatgatgattattcctagagtactactgatccctcttcccaaaataagtgaccaatttggatgtaaaatttgtttcaagataagtgatcacattacagtgctacttgtctattaatcacctcttgttcaaacttcttatcttacctcaactaccctcccacttctaaacatccctcatttaggtcatttgcctttcctcattatttggctcatatataagtgataaagtagcttattcatttattttagaacagatcgatggagtacttattacaacaatcacccgtcattcaaatttctttctaacttacactcaaccaccgtcccacctccatctctctatcttctcctccaactctctctcttttaatgaggggcaccaaaatattttcttctcaactttaatctctactaaacaatttggcatgtgtatatttgttaatggagggagtattttctaagttctaagtacttgatatatatcgtttaaccagaaatctatacctatgtgaaaaaaatacattgtccatagatcgatctttcatgagtatattactgaatcatgccaaatttggccaatgttacatattaattatgatcttaaagtttgttctgaaattactttgccttgaatcttccaagcaagtatatatatacgtgtaggcaccacacttctcatggtcaaatttagatatttatcaacctaattagtcagtccatatatagagagttaatgcaactagctagttgctttgtctaatgtgagatcttttgtacgtgaactgtaaacattatatatacaacctccatcctatattacttgtcgctttgagtttttatttgtaatgtttgatcattcgtcttattcaaaaattttttacaattgttatttattttatttgtgatttgctttattatcaaaagtattttaaatatgacttatcttttttatatttgcactaatttttcaaataaaacaaagggtcaaacgttgtaacgaaaaagtcaaagcgacatctattatgagacggaggtagtatgatcggtgtgctgtctttagtcctgtttaagatacttaatttctctgaaatacaattgctcataattacagtgttgttgtcagttttgtcttcttttccaaatactttatttgaaatatggataaatcaaacttaccttttaccctaataaactacactatacatactaatcttaataacatttatgcataacatttatggtttttgttcattcttttcaaatccgttccattctgggcagaatggggcaatgcaagtactgtcacaaagaacaaagaacagatggtgcagccggatatgcatatatatataccagctgaatttttggccgtttcaggaaaacttcaatttaaaatcaatgttggtactatcaaattaatagctgcaaagtctccactaggtctagcaagaaagtagcagctcaatggtagtaataacttcatatgtttatcgaacagatattagctttctttaaaagtccattaccaaacaaggcttatctaggggcatagtacccccatagacccatatgtaggagtaacaaagagaaaatgattaattacaaatattttaatgggcttgtttggcagggctccaactctaagtactagctaaattctgttctacctctctagttcattttataaaagcactctagcattctcctctctctttgtaggtggagctgaaaccgtttggttgggctctagctcaaggagaggtggagttggagctttgccgtatgggcccaatgtatataaaaaatatctataatttggttatagagtatttgtatttcaatgggaaaaaggtatatgtgttaatagtattatactcttctcataaaaatgagtgtgaaactaacttttgtaataatccttactattagttagctgagctcgaactattctttagtgtacaggcaacacgccccaattctacaagtgctgcaaccaaagctttcaatactggttttgccggaaatacccgtaccgcttgctggttgttacttcttccgtttcataatgtaagtcattctaacattgcccacattcatacaaatgttaatgaatctagacataaacatatgactagattcattaacatctatatgaatgtgggcaatgctagaatgacttacgttatgaaatggagggagtattagacaaatgttcaaatctaaaattttgaactcactgtggttcag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ccattaattatcttgagaaaatgtgcaattgatctctgcagcatcgcaaccttgaggctgcggcgctggtggctaaccacatgacgacgacgacggcgccggcggcgtggccgcgggacgtgcctatgacgagcagcacagccggcgccgccgacgccatggacgtggagactgatctgtacattggattgcccggcactgagcgctcctccaaccggtcggagacaggttgaagaaggccagccacagcaacagctgctatatagcatgcagtagcagcaacgacgccagtgacatcctgttcatctcacaagaataaccagagctctacgcatgcgcacatgaaacccaggcatgcagttctcggtgggtaaattattatctcgcattattagctatatgcgtgtccttgtctttttctttaggcaatggaataaaatttccggtaagtacaaacacaaacggaaacaaagaattaacaaagctgtagcagaccagatcggcaaattgaaatgccaggtaatccagtatatatttcgcttcc</dnaseqindica> 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| External Link(s) |
