Difference between revisions of "Os09g0452200"
Henikanxue (talk | contribs) (→Function) |
Henikanxue (talk | contribs) (→Function) |
||
| Line 5: | Line 5: | ||
===Function=== | ===Function=== | ||
<p> | <p> | ||
| + | This gene's sign is LYP4 which function is encoding peptidoglycan(PGN) and chitin oligosaccharide elicitor-binding protein. | ||
LYP4 and LYP6 are dual function receptors sensing both bacterial PGN and fungal chitin in rice innate | LYP4 and LYP6 are dual function receptors sensing both bacterial PGN and fungal chitin in rice innate | ||
| − | immunity. | + | immunity. in vitro ligand binding assays demonstrated that these proteins could not only bind to PGN but also to chitin. Silencing of either LYPgene significantly compromised PGN- and chitin-induced defense responses in rice, leading to increased susceptibility to both bacterial and fungal pathogens. </p> |
| − | </ | + | <br/> |
| + | '''Rice LYP4 and LYP6 Are LysM-Containing Proteins Localized at the Plasma Membrane''' | ||
<br/> | <br/> | ||
| − | |||
| − | |||
| − | |||
===Expression=== | ===Expression=== | ||
Revision as of 15:47, 6 June 2014
This gene is named as LYP4.
Contents
Annotated Information
Function
This gene's sign is LYP4 which function is encoding peptidoglycan(PGN) and chitin oligosaccharide elicitor-binding protein. LYP4 and LYP6 are dual function receptors sensing both bacterial PGN and fungal chitin in rice innate immunity. in vitro ligand binding assays demonstrated that these proteins could not only bind to PGN but also to chitin. Silencing of either LYPgene significantly compromised PGN- and chitin-induced defense responses in rice, leading to increased susceptibility to both bacterial and fungal pathogens.
Rice LYP4 and LYP6 Are LysM-Containing Proteins Localized at the Plasma Membrane
Expression
Please input expression information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this gene
State Key Laboratory of Biocontrol,Key Laboratory of Gene Engineering of the Ministry of Education, Guangdong Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-sen University
References
Bing Liu;Jian-Feng Li;Ying Ao;Jinwang Qu;Zhangqun Li;Jianbin Su;Yang Zhang;Jun Liu;Dongru Feng;Kangbiao Qi;Yanming He;Jinfa Wang;Hong-Bin Wang. Lysin Motif–Containing Proteins LYP4 and LYP6 Play Dual Roles in Peptidoglycan and Chitin Perception in Rice Innate Immunity. The Plant Cell, 2012, 24(8): 3406-3419. fullText
Structured Information
| Gene Name |
Os09g0452200 |
|---|---|
| Description |
Similar to LysM-domain GPI-anchored protein 1 precursor. Splice isoform 2 |
| Version |
NM_001069870.1 GI:115479482 GeneID:4347230 |
| Length |
3597 bp |
| Definition |
Oryza sativa Japonica Group Os09g0452200, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 9:17612255..17615851 |
| Sequence Coding Region |
17612437..17613100,17614647..17614764,17614895..17615059,17615173..17615204,17615292..17615518 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008402:17612255..17615851 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008402:17612255..17615851 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgccaccacccttgctcctcctcctcctcctcgccgccgccgccgccgccgtcgcgcccgcgcggtccaagtcgacgctggagtcctgctcctcttccaccgcctgcccagcgctgctctcctacacgctctacgccgacctcaagctcgccgagctggccgcgctcttctccgccgacccgctcgccatcctcgccgccaactccatcgacttcgccgtcccggaccccgccgaccgcatcctccccgcggggctcccgctccgcgtgcccgtcccctgcgcctgctccgacggcatccgcagggtcaccaccgtgcgctacgttgcgcgcccgggcgacacgctcgcctccgtcgcctcctccgtctacggcggcctcaccaccccggactggatcagcgactccaacggcatcctcggcgccaagcccgacgccgccgtcgacgccgggacgactctgttcgtgccgctgcactgcgcctgcttcggcggcgtcgacaacggcctccccgcggtgtacctcacgtacgtcgccgggaagggggacaccgtcgccgcagtcgcgcagaggtaccggaccacggccaccgacctcatgagcgtcaacgacatggccacccccgagctcgccgccggtgacatcatcgtcgtcccgctgccagcgtgcacatcatcattcccggcgttcacggcggactacggcctggcggtggcgaacgggacctacgcagttactgccaaccggtgtgtccagtgcagctgtggcccaggcaacttggacctgttctgcgtgccggcgccgctcgccgactcgacgtgctccagcatgcagtgcgccaacagcagcatgatgctcggcaacttcactctcctcatgaccagctccggctgcagcgtcacgtcctgcagctacggcggattcgtgaacggcacaattctcaccacgttaaccacagcactcaagcctcaatgcccaggtccgcatcagtatcctccgctgattccgccgccgacgtcgtccttcttcgagacgtacctcggcccttcgccgacgccgatggcatccgaaggaggcgtcatggccggcatggcgccgacgagcaccccggcggcgagctccggccctcctccggccggccggcacgtcgtcggcgacgttcttggggcgttcgctctctgcctcgtcggcaacctgctgtggtaa</cdnaseq> |
| Protein Sequence |
<aaseq>MPPPLLLLLLLAAAAAAVAPARSKSTLESCSSSTACPALLSYTL YADLKLAELAALFSADPLAILAANSIDFAVPDPADRILPAGLPLRVPVPCACSDGIRR VTTVRYVARPGDTLASVASSVYGGLTTPDWISDSNGILGAKPDAAVDAGTTLFVPLHC ACFGGVDNGLPAVYLTYVAGKGDTVAAVAQRYRTTATDLMSVNDMATPELAAGDIIVV PLPACTSSFPAFTADYGLAVANGTYAVTANRCVQCSCGPGNLDLFCVPAPLADSTCSS MQCANSSMMLGNFTLLMTSSGCSVTSCSYGGFVNGTILTTLTTALKPQCPGPHQYPPL IPPPTSSFFETYLGPSPTPMASEGGVMAGMAPTSTPAASSGPPPAGRHVVGDVLGAFA LCLVGNLLW</aaseq> |
| Gene Sequence |
<dnaseqindica>183..846#2393..2510#2641..2805#2919..2950#3038..3264#atgtgatcccaggtctgcagttctgcacagccgaacacaagatccaaaaccccccgcacgctttccaaagcaaagcactctctcgacatcgccccactccaggtcaacagtctccactctcactggctcgcagtcgcacacactcccacgcctccgcgctcccgaccaccgtcgccatcatcatgccaccacccttgctcctcctcctcctcctcgccgccgccgccgccgccgtcgcgcccgcgcggtccaagtcgacgctggagtcctgctcctcttccaccgcctgcccagcgctgctctcctacacgctctacgccgacctcaagctcgccgagctggccgcgctcttctccgccgacccgctcgccatcctcgccgccaactccatcgacttcgccgtcccggaccccgccgaccgcatcctccccgcggggctcccgctccgcgtgcccgtcccctgcgcctgctccgacggcatccgcagggtcaccaccgtgcgctacgttgcgcgcccgggcgacacgctcgcctccgtcgcctcctccgtctacggcggcctcaccaccccggactggatcagcgactccaacggcatcctcggcgccaagcccgacgccgccgtcgacgccgggacgactctgttcgtgccgctgcactgcgcctgcttcggcggcgtcgacaacggcctccccgcggtgtacctcacgtacgtcgccgggaagggggacaccgtcgccgcagtcgcgcagaggtaccggaccacggccaccgacctcatgagcgtcaacgacatggccacccccgagctcgccgccggtgacatcatcgtcgtcccgctgccaggtgagcccttttctagcttcaattcatagcttcttcttggatctggtagtttttggttttgttgctttgtgctaccgagatgtattgcgtggttcgttggtaattagatccatggccatgggtggttaaccgacaaatttggttggtaattttactccatactcagtaagaagtagcagtaggagtactatactgacagtaatgtgattagtctagtgtgtccttggtaatttagtgcaatgcagtaaccgcactggccacaagccttgctactgcgagcatgagatttactccgaattctggatacgggcatgtgcagatttgtagtactagaatgcgtctaatccgatcctaagttgctatattttgggacggagggagtatctagctttgatatcagaaaggccatgtttagttcctatgcaaaaactttttatcctgtcatatcgaatatttagacatatacatggagaattaaatatagataaaaaaactaattacacagattgcgtgtaattgtgagatgaatcttttaagcctaattgcgctatgatttgataatgtggtgctacagtaaatatgtgctaatgatgaattaattaggcttaataaatttgtctcgcagtttacaggcggaatctataatttatttttttattagattacgtttaatactttaagtctatgtccatatatccgatgtaacacgccaaaacttttcatcctgtaactaaacagggccaaaatgcttcaagattcgtgaggtgaaacatgagtgccagcaatgcagcgcatcactgcttgtctgctcaaattgtttactagtgccagttcggatgctctgtttgtgtatctgcacgtactggcgctctcagctttaaaataaaagggtccatgcatgaaactttacctttccactgctccttttgatcatttgctgtcaattaagctgacacccaagaaaaggagatgaaaaaaaaggtgtagcatgcagcacgattgcacgacataaatttgacaattaagaatgttcaacacaaacttagagagactttaatttcactattgtgagaaagaaagtgttgtgtcgttttctctgttgtgaatagctgaaaggtcttctagagttcttaagtgcgatccatgtgtgatgcattgaaaaaattaacgattttcatttgtgcacatagattcagcactgaaaagctgtgctgttttcctgtttcctaaaaggaggttggtaaacaaactaaacactctgctctgagtttctagaccgaattgtagttccgataatttctgaagggaagtggccaaaagtttcaatcccctccatacccagatgttctgtcagatcacggacaaacaggattctatcataattaatcagtggccactacaatagccagtacctagctacagttagtacatgattggtccatttcgtcctcgtcgtcactgttatccctataccgttttctgcttcatttatctcacatgcaattaatcatgacggagtaccattttttttctctcgaacatgcagcgtgcacatcatcattcccggcgttcacggcggactacggcctggcggtggcgaacgggacctacgcagttactgccaaccggtgtgtccagtgcagctgtggcccaggcaacttggagtaggcaccgatcgatttcaccctcccatcttcaatctgctccagatcttacgcgaaccgagagatttctctcctgtttctgacgctgccgttgcccgttgctttgcttgcttttgctctgctgttgcagcctgttctgcgtgccggcgccgctcgccgactcgacgtgctccagcatgcagtgcgccaacagcagcatgatgctcggcaacttcactctcctcatgaccagctccggctgcagcgtcacgtcctgcagctacggcggattcgtgaacggcacaattctcaccacgtaattgatcagcttttttttttttgtgtgtgtgtgtgtcccaaatccatctcgcattttgctattcagaaaccgttgtctcaccgtagcgatacattttgtgcatctttcaggttaaccacagcactcaagcctcaatgcccaggtataaaattcgtgctcaattatgtctcagttcaccatttctgccttgaaaaaccgagactttatgcagctcttgcttttcgtgcaggtccgcatcagtatcctccgctgattccgccgccgacgtcgtccttcttcgagacgtacctcggcccttcgccgacgccgatggcatccgaaggaggcgtcatggccggcatggcgccgacgagcaccccggcggcgagctccggccctcctccggccggccggcacgtcgtcggcgacgttcttggggcgttcgctctctgcctcgtcggcaacctgctgtggtaacagagcggctctcgccgttgatgctacataattttgtacagaagctgtggccggctgtgtttttgtcgggcagcgtcgggttgtgcccaatttttgttgcgttcattcgatttgtctgccactcactcctgtggaatggcaaacacaattacagaagcgcagatctctccagcgcggctgtaatggtcctgaattcctgatgctattgagaatgtgagtaccgagtagtgtgctttttatcgacgctttttactgtaccttctactactgatatgctttttagggcacccacaatggttatttataaactctctacaggagattcatatcagc</dnaseqindica> |
| External Link(s) |
