Difference between revisions of "Os06g0229800"
(→Annotated Information) |
(→Evolution) |
||
| Line 8: | Line 8: | ||
===Evolution=== | ===Evolution=== | ||
| − | + | According to comparison of genomic DNA sequences among nine rice varieties, S-type varieties: Double Branch early, Minghui 63 and Zhaiyeqing,have G at the 264 site.While in C-type varieties(Ningxia early japonica, Chunjiang 06, No. 6 Nipponbare Yang Rice (indica)),have a C at the 264 site. So, the replace of G264 to C264 cause the amino acid change from Glu to Asp of SSS Ⅱ enzyme protein, which may be the genetic basis leading to pasting temperature change. Study the phylogenesis of five different plants including goats grass, wheat, barley, maize and rice, it shows that rice SSS Ⅱ and SSS Ⅱ a and b of maize is nearer relatively in evolutionary kinship, while is distantly related with goat grass species. | |
| − | |||
| − | |||
==Labs working on this gene== | ==Labs working on this gene== | ||
Revision as of 06:53, 7 June 2014
Please input one-sentence summary here.
Contents
Annotated Information
Function
ALK gene encodes a soluble starch synthase Ⅱ, controlling the temperature of rice pasting .The encoding amino acid product of ALK gene may cause a change in starch synthase activity, thus affecting the synthesis of amylopectin branch chain of medium length, so that the crystal layer structure changes, resulting in the final performance of pasting temperature change.
Expression
ALK gene is a single copy gene, and it has a specific expression in the seed of rice,RT-PCR results showed that expression of the gene product is not detected in the blade tissues.
Evolution
According to comparison of genomic DNA sequences among nine rice varieties, S-type varieties: Double Branch early, Minghui 63 and Zhaiyeqing,have G at the 264 site.While in C-type varieties(Ningxia early japonica, Chunjiang 06, No. 6 Nipponbare Yang Rice (indica)),have a C at the 264 site. So, the replace of G264 to C264 cause the amino acid change from Glu to Asp of SSS Ⅱ enzyme protein, which may be the genetic basis leading to pasting temperature change. Study the phylogenesis of five different plants including goats grass, wheat, barley, maize and rice, it shows that rice SSS Ⅱ and SSS Ⅱ a and b of maize is nearer relatively in evolutionary kinship, while is distantly related with goat grass species.
Labs working on this gene
Please input related labs here.
References
Please input cited references here.
Structured Information
| Gene Name |
Os06g0229800 |
|---|---|
| Description |
Similar to Starch synthase IIA |
| Version |
NM_001063751.1 GI:115467233 GeneID:4340567 |
| Length |
4946 bp |
| Definition |
Oryza sativa Japonica Group Os06g0229800, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 6:6747359..6752304 |
| Sequence Coding Region |
6747562..6747891,6748021..6748689,6748789..6748857,6749547..6749624,6749707..6749817 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008399:6747359..6752304 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008399:6747359..6752304 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgtcgtcggccgtcgtcgcgtcatccaccacgttcctcgtcgcgctcgcctcttcggcgtcacggggagggcccaggagggggagggtggtgggcgtggccgcgccgccggccctgctttacgacggccgcgccggaaggctagccctacgggcgccgcctccgccccggcctcggcctcggcgtcgggatgcgggcgtggtgcgccgcgcggatgatggggagaacgaggcggcggtggagcgggcgggtgaggacgacgacgaggaggaggagttctcttcgggcgcgtggcagccgccccgctcgcgtcgcggcggcgtcggcaaggtcttgaagcggaggggcaccgtcccgcccgtcggccggtacggctccggcggtgatgcggcgagagtgcgcggggcggccgcgccggcgccggcgccgacacaggacgccgcctcaagtaagaacggagcgcttctcagcggccgcgacgacgacacacctgcctcacggaacggatcggtcgttaccggcgccgacaagcctgccgccgccacgccgccggtgaccataacgaagctcccagcgccggactcccccgtgatccttccatccgtagacaagccgcagccggagttcgtcatcccagacgcgacggcgccggcgccgccaccgcccggttcaaatcccaggtcgtccgctcctctccccaagcctgacaattcggaatttgcagaggataagagcgcaaaagttgttgagagtgctccgaagccaaaggcgactagatcttcccctattcctgcggtagaagaggagacgtgggatttcaagaaatattttgatctgaacgaaccggacgccgcggaggatggcgatgacgatgatgactgggctgattcagatgcgtcagattctgagatcgaccaggatgacgattcgggccctttggctggggagaatgtcatgaacgtgatcgtggtggctgctgaatgttctccctggtgcaaaacaggtgggcttggagatgttgcaggtgctttacccaaagctttggcgaggagaggacatcgtgttatggttgtggtaccaaggtacggtgattacgcggaagcccaggatgtaggaatcaggaaatactacaaggctgctggacaggatctggaagtgaaatatttccatgcatttatcgatggagttgattttgtgttcattgacgctcctctcttccgtcaccgtcaggatgacatctatggggggaacagacaggaaatcatgaagcgcatgattctgttttgtaaggctgctgttgaggttccttggcacgttccatgcggtggtgtgccctatggggatggcaacttggtgttccttgcaaacgattggcacactgcactcctgcctgtttatctgaaggcatattacagagacaatggcatgatgcagtacactcgctctgtccttgtgatacataatatcgcttaccagggccgtggcccagtagatgaattcccctacatggaattgccggagcactacctggatcacttcaagctgtacgaccccgtcggcggcgagcacgccaacatcttcggcgcgggcctgaagatggcggaccgggtggtgaccgtgagccccggctacctctgggagctgaagacgacggagggcggctggggcctccacgacatcatacgggagaacgactggaagatgaacggcatcgtgaacggcatcgactaccgggagtggaacccggaggtggacgtgcacctgcagtccgacggctacgccaactacaccgtggcctcgctggactccagcaagccgcggtgcaaggcggcgctgcagcgcgagctggggctggaggtgcgcgacgacgtgccgctgatcgggttcatcgggcggctcgacgggcagaaaggtgtggacatcatcggcgacgcgatgccgtggatcgccgggcaggacgtgcagctggtgctgctgggctccggccgccgcgacctggaggtgatgctgcagcggttcgaggcgcagcacaacagcaaggtgcgcgggtgggtggggttctcggtgaagatggcgcaccggatcacggcgggcgccgacgtgctggtcatgccgtcgcggttcgagccgtgcggcctcaaccagctctacgccatggcgtacggcaccgtccccgtcgtgcacgccgtcggcgggctgagggacaccatgtcggcgttcgacccgttcgaggacaccggcctcgggtggacgttcgaccgcgccgagccgcacaagctcatcgaggcgctcggccactgcctcgagacgtaccgcaagtacaaggagagctggagggggctccaggtgcgcggcatgtcgcaggacctcagctgggaccacgccgccgagctctacgaggaggtccttgtcaaggccaagtaccaatggtga</cdnaseq> |
| Protein Sequence |
<aaseq>MSSAVVASSTTFLVALASSASRGGPRRGRVVGVAAPPALLYDGR AGRLALRAPPPPRPRPRRRDAGVVRRADDGENEAAVERAGEDDDEEEEFSSGAWQPPR SRRGGVGKVLKRRGTVPPVGRYGSGGDAARVRGAAAPAPAPTQDAASSKNGALLSGRD DDTPASRNGSVVTGADKPAAATPPVTITKLPAPDSPVILPSVDKPQPEFVIPDATAPA PPPPGSNPRSSAPLPKPDNSEFAEDKSAKVVESAPKPKATRSSPIPAVEEETWDFKKY FDLNEPDAAEDGDDDDDWADSDASDSEIDQDDDSGPLAGENVMNVIVVAAECSPWCKT GGLGDVAGALPKALARRGHRVMVVVPRYGDYAEAQDVGIRKYYKAAGQDLEVKYFHAF IDGVDFVFIDAPLFRHRQDDIYGGNRQEIMKRMILFCKAAVEVPWHVPCGGVPYGDGN LVFLANDWHTALLPVYLKAYYRDNGMMQYTRSVLVIHNIAYQGRGPVDEFPYMELPEH YLDHFKLYDPVGGEHANIFGAGLKMADRVVTVSPGYLWELKTTEGGWGLHDIIRENDW KMNGIVNGIDYREWNPEVDVHLQSDGYANYTVASLDSSKPRCKAALQRELGLEVRDDV PLIGFIGRLDGQKGVDIIGDAMPWIAGQDVQLVLLGSGRRDLEVMLQRFEAQHNSKVR GWVGFSVKMAHRITAGADVLVMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTMSAF DPFEDTGLGWTFDRAEPHKLIEALGHCLETYRKYKESWRGLQVRGMSQDLSWDHAAEL YEEVLVKAKYQW</aaseq> |
| Gene Sequence |
<dnaseqindica>204..533#663..1331#1431..1499#2189..2266#2349..2459#2565..2609#3026..3199#3667..4623#gcgcacgctttacaggtggctcccccgccgtctcccccgcgtgccctcctcgccgtcgtcgctcgctgcccatttcatcccccgcacggcacgcgcgggacgaaagcaaagcacgcgcacacactcaaacccgcgcctcctccgctctcgtccgtcgcttcggttcggttccggctcgatcggggaggttcctcggggcgaccatgtcgtcggccgtcgtcgcgtcatccaccacgttcctcgtcgcgctcgcctcttcggcgtcacggggagggcccaggagggggagggtggtgggcgtggccgcgccgccggccctgctttacgacggccgcgccggaaggctagccctacgggcgccgcctccgccccggcctcggcctcggcgtcgggatgcgggcgtggtgcgccgcgcggatgatggggagaacgaggcggcggtggagcgggcgggtgaggacgacgacgaggaggaggagttctcttcgggcgcgtggcagccgccccgctcgcgtcgcggcggcgtcggcaaggtgggttggtggtgtcgatcggggcgccgagatcgtcgtgctcgagaggtgttctctgctttgattcgctttgatgttttcatttgaaaccgacgcgtgtgcttgcgcgtgcgcgcgctgtgtttgcaggtcttgaagcggaggggcaccgtcccgcccgtcggccggtacggctccggcggtgatgcggcgagagtgcgcggggcggccgcgccggcgccggcgccgacacaggacgccgcctcaagtaagaacggagcgcttctcagcggccgcgacgacgacacacctgcctcacggaacggatcggtcgttaccggcgccgacaagcctgccgccgccacgccgccggtgaccataacgaagctcccagcgccggactcccccgtgatccttccatccgtagacaagccgcagccggagttcgtcatcccagacgcgacggcgccggcgccgccaccgcccggttcaaatcccaggtcgtccgctcctctccccaagcctgacaattcggaatttgcagaggataagagcgcaaaagttgttgagagtgctccgaagccaaaggcgactagatcttcccctattcctgcggtagaagaggagacgtgggatttcaagaaatattttgatctgaacgaaccggacgccgcggaggatggcgatgacgatgatgactgggctgattcagatgcgtcagattctgagatcgaccaggatgacgattcgggccctttggctggggagaatgtcatgaacgtgatcgtggtggctgctgaatgttctccctggtgcaaaacaggcatgtacacgatatatacttcttttttctcttttttgttcttctgatcttgtaaatttgcttcagttactgatatgaacaagtgttgcatttgcacaggtgggcttggagatgttgcaggtgctttacccaaagctttggcgaggagaggacatcgtgttatggtattactccttttttctctccttcatggttggatgtttcttccattcttacagatttgatcatttaattaacgtatattttcagatatataaatttggatcaaatgtaaagcagattagttctcttatgttcttttgtttacataatcatgatggcaaattaaaaaggctactccagctgttagattcaaaatacaaaagtaatattgataaatttgcaaatctgtacttgaaagctaaattgcttactattgttacagaaatgttcatttctaacatgctgttgaaaatatatacactatggcgtagccgcttagatcatcacgtggccatggaaactagtgccaaaagtagttctcttagttacactagttacatacctgtacatgataacggatcaggcccatacaattagggatagattaggagcccgttaacgaactaggcccttataattagggagggacggtagttacttttcgcatatggacatgctgcacgtgttgggaggaggggatggaaggaagacgacttcgcttttaagatagtagagaaatgtagcaattttttttagcaattttagttatggtaataatataaaccacaacgtattcagagatcggaaacggggactctcggtgacttcctgatataaactgataactggcaaatgcatctttcaatcttaggttgtggtaccaaggtacggtgattacgcggaagcccaggatgtaggaatcaggaaatactacaaggctgctggacaggtgtgtgtcaacaatgcaatccaagaagactggcataggagacgcaaattccttagtaattggtttttattttggcctgcaggatctggaagtgaaatatttccatgcatttatcgatggagttgattttgtgttcattgacgctcctctcttccgtcaccgtcaggatgacatctatggggggaacagacaggtgaagcttctatctgtttggtattacattgcattagtaaaacttaagttgcatctcctaggcgtactgatttgaaaatgcttacccattcccattttcattcaggaaatcatgaagcgcatgattctgttttgtaaggctgctgttgaggtattttctccaactccattatcaatcattaatttggttttaggaatgagatgtatttgtttggtttgaggattggtcaaaagcacaaatcattttttctgttgataaatagaagaagtgtattaacttttggactgaagcacacaataagtaggagaaatgaggtcgcagtagatgatttgaatttgatccctcaaacaaacagcccgtaaatgtttctgcaagatttcacagagattcatattcttttttattttaaatatattacacattatcgccaaatacacggatgaactccttcgatacctctagcagcatttcaacctgctaccgttcgtaatatgcaatgctcttgccaatgttgtcatatgttcccctacaaagggctatattttctgtttctgtacaatcggcaggttccttggcacgttccatgcggtggtgtgccctatggggatggcaacttggtgttccttgcaaacgattggcacactgcactcctgcctgtttatctgaaggcatattacagagacaatggcatgatgcagtacactcgctctgtccttgtgatacataatatcgcttaccaggttttgtttttctctcctccctaatgaatcatctttattctatttgtatgcatctcctgctgtttgttagagaaattagttgagtgcacaaattgtgggtcatggtaattattgagcagggacacgataaactcttcttcagtctattactacttttagttcagcaatttctccgtttcatattataatttataagtcgttttttttctaatcaaacatctttacgtttgattaactttatcgaaaaatttaacagcatctataacatcaaattagtttaattaaatataatgtttaatgtaatttgattatatgtttgttttgtattggaaatgttattgtatttttctataaactaattaaatttaaaactgtttaacttaaaaaaatatcaaaacaatttacaatatgaaacgggccggggagtactttttttgtgtgctaaatggttcgtgtaatgtttgtagggccgtggcccagtagatgaattcccctacatggaattgccggagcactacctggatcacttcaagctgtacgaccccgtcggcggcgagcacgccaacatcttcggcgcgggcctgaagatggcggaccgggtggtgaccgtgagccccggctacctctgggagctgaagacgacggagggcggctggggcctccacgacatcatacgggagaacgactggaagatgaacggcatcgtgaacggcatcgactaccgggagtggaacccggaggtggacgtgcacctgcagtccgacggctacgccaactacaccgtggcctcgctggactccagcaagccgcggtgcaaggcggcgctgcagcgcgagctggggctggaggtgcgcgacgacgtgccgctgatcgggttcatcgggcggctcgacgggcagaaaggtgtggacatcatcggcgacgcgatgccgtggatcgccgggcaggacgtgcagctggtgctgctgggctccggccgccgcgacctggaggtgatgctgcagcggttcgaggcgcagcacaacagcaaggtgcgcgggtgggtggggttctcggtgaagatggcgcaccggatcacggcgggcgccgacgtgctggtcatgccgtcgcggttcgagccgtgcggcctcaaccagctctacgccatggcgtacggcaccgtccccgtcgtgcacgccgtcggcgggctgagggacaccatgtcggcgttcgacccgttcgaggacaccggcctcgggtggacgttcgaccgcgccgagccgcacaagctcatcgaggcgctcggccactgcctcgagacgtaccgcaagtacaaggagagctggagggggctccaggtgcgcggcatgtcgcaggacctcagctgggaccacgccgccgagctctacgaggaggtccttgtcaaggccaagtaccaatggtgaagagaccatgtccgcccgcggtctccgcctgcgcgttcggcagctatagctatagcctccctgaagaagcttggcgctgctgtggaggtgcgactcggtggcggtgtggcgccggcgccggcgcttgcaggggaggtgtttgtgctgaccgagctgtgcgttgaggtgcgcaaattagcttccggtttgtgtgttcatggcgaggcatggtggagttgagggagtattaagctttgtttcagatgcatcatgcatgcgtaataggatgttgtatttaataatgtgtttgttatgtccattgatgcgatgttacttcttcatta</dnaseqindica> |
| External Link(s) |
