Difference between revisions of "Os03g0718600"
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| − | + | In CMSWA lines, WA352 accumulates preferentially in the anther tapetum, thereby inhibiting COX11 function in peroxide metabolism and triggering premature tapetal programmed cell death and consequent pollen abortion. | |
==Annotated Information== | ==Annotated Information== | ||
Revision as of 16:29, 7 June 2014
In CMSWA lines, WA352 accumulates preferentially in the anther tapetum, thereby inhibiting COX11 function in peroxide metabolism and triggering premature tapetal programmed cell death and consequent pollen abortion.
Contents
Annotated Information
Function
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Expression
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Evolution
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You can also add sub-section(s) at will.
Labs working on this gene
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References
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Structured Information
| Gene Name |
Os03g0718600 |
|---|---|
| Description |
Cytochrome c oxidase assembly protein CtaG/Cox11 family protein |
| Version |
NM_001057624.2 GI:297601593 GeneID:4333922 |
| Length |
2954 bp |
| Definition |
Oryza sativa Japonica Group Os03g0718600, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 3:29862461..29865414 |
| Sequence Coding Region |
29862661..29862762,29862860..29862940,29863453..29863557 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008396:29862461..29865414 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008396:29862461..29865414 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>gtgaaggttaaacctggtgaaagtgctcttgcattttatactgctgaaaatcgtagttcagctccaataactggtgtatccacatataacgtagctcctatgaaggctgcaatatatttcaataagatacaatgtttttgctttgaggagcaaacacttcttccaggggagcagattgacatgccggtgttcttctacatcgatcctgagtttgagacagaccccaaaatggaaggggtgaacaatattgtcctttcttacacattctttaaggtgaacgacagttaa</cdnaseq> |
| Protein Sequence |
<aaseq>VKVKPGESALAFYTAENRSSAPITGVSTYNVAPMKAAIYFNKIQ CFCFEEQTLLPGEQIDMPVFFYIDPEFETDPKMEGVNNIVLSYTFFKVNDS</aaseq> |
| Gene Sequence |
<dnaseqindica>2653..2754#2475..2555#1858..1962#gtagcgtcgaacaccgtacagcgaatcgcggcggcggaatcacacatcgccgcctctcgcacgcgccgccgcgatgccgccgccgccgccgccttcgttggccaggctccaccaacgcctctccctctcgctcctccggggacgctccccccccgcggcggccgacgccttcctccgccgcgggctcgcctcgtccgcctcctcctcctcttccgccgccgccgccgcggcggtggcggcggcggcggcaggccgggagaagagctcgaggaggacgctagcgtacctgctaggcgtggccgcggcgatggtcggcgcctcctacgccgccgtcccgctctaccgccgcttctgccaggccaccggctatggcggcaccgtccagcgccgcgaggtctggtcttcatttccctaacttgcctctatctttcttgttctcaatcgtaatatgctgaaattaacactgtgctgggacatcgattaagctgtgcttgattttgtggatagcgtctggttccattattggcaggttttagttttacaatctgctgcttggcactgtgatatgctgaaattgatgcgattcatcagctatgtggcctttgtcatgtggagaccgccgttccagttcttatagatgccatggacacgaacgtgttgttgtattgccatgtgtaaattatgagtctagaagattgtaatctattgatagatggcacttcctctcgccgcctctcgcctctcgcactctgcattctattaacaactatgaatatctgtgctggaatttgttaaaatgcccatcaaagggtgatcttacaaatgtgttgggagtggcatgaaatagtttttgattcatttttggtgcttgtatggataactggtctaagtagacattgctgaagcagggttattgttggactctatgaattctgtcaaaaaatagtaataaattttctgggtagtgaatcattcattattcattactggtgcattgaaaaagttctgataaatttggcatctttgtaactacctgattcaagtgagtttgaacctggagtattattccttaacaatgtttggctctctacagagtgtggaggagaagatctcacgacatgctcgagacggaacaacaacttcaaggtgactcttcctatgcccagggtccagttttttcactacttgtcgtttccagttccgaaaggcagtgccatggtggtttttaaaatatactttctatctcttgatagagccttgttgcaatgtgagctcaaactaggcctgtgttgccgatctgttgcctgttgtgtaaattttcctttactgttctcttacatgatcagatggctttttgccaatgtttatggttcagaagtaccttcatttcaaatagtgggatgacatgaaaccacatgtgatgatagatttagatgaagtttaacttggaatagccatacagccttgccagcaattgcatgtgtacagcaaatttgctgtaatcatgggctaatattttggaaaaccattatcttcatgtttatatgattgcaactaattacaagagtttcgggataaatttttaaatgaatttgttgtttcttgtttatccaaataatctcgtgtgctaaaatttagctgtgattcagttttttgatgacactttattttctttgctgttgagactaatgcaattaattttatttgcagagagataattgtccaatttaatgctgacgttgctgatggaatgccgtggaaattcattccaacacagagagaagtaaatgctttgcttaagaaacaatttatagccctttccgcagcatgtttatcctctacctattccatttgtaggtgaaggttaaacctggtgaaagtgctcttgcattttatactgctgaaaatcgtagttcagctccaataactggtgtatccacatataacgtagctcctatgaaggtatgtaattcagcacaacttttacacccttaaactgctgccatgtcctggaaagaaagatttgtgagagatgcagaagtgtctctggattcacaaagctactgtaggcctttaactcttaatcctttgttaattttgttagcctaaattagtggaaatatgttggatgtaatcctttaacttttaatcctatattcttttttgttaaatatgttaagttaaatagccccaactctcaagcatgatttctaggaagaaaatttttgaaaccattagccatgattagacttcctcaactgataagagtttgaaaactgtgatcagaaaattgtagaaaacataacctctgctgtgatattcttagtcaaggagtgactcaggtgacttcacaatatcatcctatttatgttgctaactcaaattatgctgaggtgtacagctagggcatttaagctaacaggaggcagactcctaatgttttgagtttacaactcttttctttcatcctgtaggctgcaatatatttcaataagatacaatgtttttgctttgaggagcaaacacttcttccaggggagcagattgacatgccggtaaattcaacttgcattcgatgaaatgcatggctagttagttatctggtgtttgtctacacttattccaactttgtatgtgaacttttttcttcaggtgttcttctacatcgatcctgagtttgagacagaccccaaaatggaaggggtgaacaatattgtcctttcttacacattctttaaggtgaacgacagttaattgtatcggtaccgtaaagtaagtggtaacattagttctatttaaacaccttgccaacgagtaacacaaaaattcctttcatgtaacacaagttagggttttgtttagtgtgtattaattgacatgtgtttcttggaaattttgcaaataaatatgtaagaattgttcacagaacaatcgaaatggtgcatcttgatttg</dnaseqindica> |
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