Difference between revisions of "Os02g0100200"
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==Annotated Information== | ==Annotated Information== | ||
===Function=== | ===Function=== | ||
| − | + | Steroid receptors of the nuclear receptor family are all transcription factors. Depending upon the type of receptor, they are either located in the cytosol and move to the cell nucleus upon activation, or remain in the nucleus waiting for the steroid hormone to enter and activate them. This uptake into the nucleus is facilitated by nuclear localization signal (NLS) found in the hinge region of the receptor. This region of the receptor is covered up by heat shock proteins (HSPs) which bind the receptor until the hormone is present. Upon binding by the hormone the receptor undergoes a conformational change releasing the HSP, and the receptor together with the bound hormone enter the nucleus to act upon transcription. | |
===Expression=== | ===Expression=== | ||
Revision as of 06:19, 8 June 2014
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Contents
Annotated Information
Function
Steroid receptors of the nuclear receptor family are all transcription factors. Depending upon the type of receptor, they are either located in the cytosol and move to the cell nucleus upon activation, or remain in the nucleus waiting for the steroid hormone to enter and activate them. This uptake into the nucleus is facilitated by nuclear localization signal (NLS) found in the hinge region of the receptor. This region of the receptor is covered up by heat shock proteins (HSPs) which bind the receptor until the hormone is present. Upon binding by the hormone the receptor undergoes a conformational change releasing the HSP, and the receptor together with the bound hormone enter the nucleus to act upon transcription.
Expression
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Evolution
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Labs working on this gene
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References
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Structured Information
| Gene Name |
Os02g0100200 |
|---|---|
| Description |
Steroid nuclear receptor, ligand-binding domain containing protein |
| Version |
NM_001052115.1 GI:115443600 GeneID:4327972 |
| Length |
4599 bp |
| Definition |
Oryza sativa Japonica Group Os02g0100200, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 2:9298..13896 |
| Sequence Coding Region |
9542..9762,11085..11196,11328..12749,12830..13624 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008395:9298..13896 source=RiceChromosome02 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008395:9298..13896 source=RiceChromosome02 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgaggaagcgcactgcatctgatcgcattcgggtcccctccagcaaccccgcgccatcgccgtcgccgccgccgccgccgccgccgccggaggaacctgccgtgcccatgccgcatgttggggcccgccgctccacgcgcgtcttcgtgcccaagacgcccaggccgcctcagccttctgatcctgccagggtcctccgctccggcaagcgcctcgccttctccgaatcccccgccgacgcccactggttccagtgcaagcccaacaactgcttccacgtccatgaccaccaacgccaacttcacgacgaccccaagccaccgccgccgcctctgccgcgcacaaggtccttcgggatcgtctacagcaggaagcgccgccgccgcctccccgaacccaaggaggacaccaggtttgccattgtcttcactaggaagagacccaaggtcgccccttttcagcaccacgccccgaacgaccttgccaccatcccatgctcctcttccagggagtttgcctccaggactggcttctttgattcccatttcttgaccctggtggattgtattcccactaataaagctgacgctgccatgcttattgtccttgtggattcatcttgctctgggagctctcagcacttcttgcgcctcctcctctctgtgctgcgctggatgcgtagctgccgacggggcaaggtccgaaaccttgcctcctttctctcgtccgatgctgtcgccactgcgcttgcattgcggggattgcattttgtccagcttcaatgccggagagactgtgcattgtcacagagggctttggtgcaatgtggctggtgtgagcttcgtggtgccaaggattctgaaccattgttgtctgtcaatttcttggcagtcccttcttacttccagattttgcacttgttaatagcactcgagtcaatgtatcttccagctgtgattcgtacgagaatgcatttggttggtggagctgaagaaatttatcctcgcaccctattggaggaggattctgaatctctgagcactggggatactgatcctgctgttgacctgtgtagcaacaaactttgcagtgtggctcaagattatgtgccccttgaagagattgcaggagtggtggtccatggtctgaggctaaagaagcatcaaaggaagagaagctctatgcggcatcccctcagtcgacagcgtcttgctgcaagatttcccgacaaggtagttgcaacaaaccagaccgatgtggctagacagacagaagcggatgcgccaccctcagttagtccggagcttccactggagcctgtcaaacctaaagcagcactggaaatctctcttgatttgcttgaaaacatggatgacagtgatgtttcaactcctataggatcaaatgggaagcaaaagaggtcttctttgaaaagtcccattgagcgcatgaatgaaaggttggctttggctgaggttagacagaatatagattctgttcactgcagagcaaaccttttaattattcaacctgataggtgctggagggaagaaggcgctgaagttatgctggaaccatcggaatcaaatgagtggtgtatagctgtgaagatacatggtgtcaatagaatatctctgaagccttcggagcagaggttttatgttgttaaccggttcacccatgcctatattttggcagttgatgatggattgaagattgagttctctgataaatgggactggcttttgtttaaggagttgcaaattgagggtcgggagcgcaattcccagggaaagatgataccaattcctggtgtaaatgaggtttctgatgacatgggagtgattggaacatatcctttttcacgccctgtgccagactatatcagaatggcggatgatgaggttgggcgagctctctcaagggactctgtatatgatctggattctgaggatgaacagtggctcacccagttgaatcattcagattctgacagaaaaagcgcacatcttaatcatatttcttatgaagattttgaaaagatgattaccacgtttgaaaaggatgctttcaacaaccctgaaggaactagtgatttggatcagattctttccagataccctactttggaaaaggaccataatgtccttgctgtgcatgaatattggataaacaagagatataagaaaggtgtaccactgctaaggatattgcagggtgcaacactaagacgaggacaactgtcacaaagatctattaagaaaaaaagatctttcaagagacaaagaagccaagctggccgtggaaagcctgacatatgcttgcaagatgctaatggtgctgaagaggaggctttgcggagagttgtggaagccgaacgtgctgcaacacaggcaggagaaacagctgttcgtctgcgcagtagagctcagcgtctcatggcaaaggctgagctggtggcatacaaatctattatggccctcaggattgctgaggctgctaggatatctgactcgtcacgggatcttgttttgacgaccctcgactag</cdnaseq> |
| Protein Sequence |
<aaseq>MRKRTASDRIRVPSSNPAPSPSPPPPPPPPEEPAVPMPHVGARR STRVFVPKTPRPPQPSDPARVLRSGKRLAFSESPADAHWFQCKPNNCFHVHDHQRQLH DDPKPPPPPLPRTRSFGIVYSRKRRRRLPEPKEDTRFAIVFTRKRPKVAPFQHHAPND LATIPCSSSREFASRTGFFDSHFLTLVDCIPTNKADAAMLIVLVDSSCSGSSQHFLRL LLSVLRWMRSCRRGKVRNLASFLSSDAVATALALRGLHFVQLQCRRDCALSQRALVQC GWCELRGAKDSEPLLSVNFLAVPSYFQILHLLIALESMYLPAVIRTRMHLVGGAEEIY PRTLLEEDSESLSTGDTDPAVDLCSNKLCSVAQDYVPLEEIAGVVVHGLRLKKHQRKR SSMRHPLSRQRLAARFPDKVVATNQTDVARQTEADAPPSVSPELPLEPVKPKAALEIS LDLLENMDDSDVSTPIGSNGKQKRSSLKSPIERMNERLALAEVRQNIDSVHCRANLLI IQPDRCWREEGAEVMLEPSESNEWCIAVKIHGVNRISLKPSEQRFYVVNRFTHAYILA VDDGLKIEFSDKWDWLLFKELQIEGRERNSQGKMIPIPGVNEVSDDMGVIGTYPFSRP VPDYIRMADDEVGRALSRDSVYDLDSEDEQWLTQLNHSDSDRKSAHLNHISYEDFEKM ITTFEKDAFNNPEGTSDLDQILSRYPTLEKDHNVLAVHEYWINKRYKKGVPLLRILQG ATLRRGQLSQRSIKKKRSFKRQRSQAGRGKPDICLQDANGAEEEALRRVVEAERAATQ AGETAVRLRSRAQRLMAKAELVAYKSIMALRIAEAARISDSSRDLVLTTLD</aaseq> |
| Gene Sequence |
<dnaseqindica>4135..4355#2701..2812#1148..2569#273..1067#acccgcaaccccaacggaggaggaagggaagaagggaggaaaccctaaaattcctcttctccttctgctctcgattcgattcgatctcgtcgccacgcccccgcccccgcccccgccccgccccgcaagccgccgatctgttgcgcctcgtcaagaccccccagcccaagatctgattcgtttcgattccgagctgagcagcagcaggagcaggaggaggaggaggagctcatcgatttggtggttgctgatgggcggcgcatccatgttggatgaggaagcgcactgcatctgatcgcattcgggtcccctccagcaaccccgcgccatcgccgtcgccgccgccgccgccgccgccgccggaggaacctgccgtgcccatgccgcatgttggggcccgccgctccacgcgcgtcttcgtgcccaagacgcccaggccgcctcagccttctgatcctgccagggtcctccgctccggcaagcgcctcgccttctccgaatcccccgccgacgcccactggttccagtgcaagcccaacaactgcttccacgtccatgaccaccaacgccaacttcacgacgaccccaagccaccgccgccgcctctgccgcgcacaaggtccttcgggatcgtctacagcaggaagcgccgccgccgcctccccgaacccaaggaggacaccaggtttgccattgtcttcactaggaagagacccaaggtcgccccttttcagcaccacgccccgaacgaccttgccaccatcccatgctcctcttccagggagtttgcctccaggactggcttctttgattcccatttcttgaccctggtggattgtattcccactaataaagctgacgctgccatgcttattgtccttgtggattcatcttgctctgggagctctcagcacttcttgcgcctcctcctctctgtgctgcgctggatgcgtagctgccgacggggcaaggtccgaaaccttgcctcctttctctcgtccgatgctgtcgccactgcgcttgcattgcggggattgcattttgtccagcttcaatgccggagagacgtaagccttctacagacttaaaaagtgtgccagttttagttccttgtacacctggttaatgtgtatgccttttcttgcagtgtgcattgtcacagagggctttggtgcaatgtggctggtgtgagcttcgtggtgccaaggattctgaaccattgttgtctgtcaatttcttggcagtcccttcttacttccagattttgcacttgttaatagcactcgagtcaatgtatcttccagctgtgattcgtacgagaatgcatttggttggtggagctgaagaaatttatcctcgcaccctattggaggaggattctgaatctctgagcactggggatactgatcctgctgttgacctgtgtagcaacaaactttgcagtgtggctcaagattatgtgccccttgaagagattgcaggagtggtggtccatggtctgaggctaaagaagcatcaaaggaagagaagctctatgcggcatcccctcagtcgacagcgtcttgctgcaagatttcccgacaaggtagttgcaacaaaccagaccgatgtggctagacagacagaagcggatgcgccaccctcagttagtccggagcttccactggagcctgtcaaacctaaagcagcactggaaatctctcttgatttgcttgaaaacatggatgacagtgatgtttcaactcctataggatcaaatgggaagcaaaagaggtcttctttgaaaagtcccattgagcgcatgaatgaaaggttggctttggctgaggttagacagaatatagattctgttcactgcagagcaaaccttttaattattcaacctgataggtgctggagggaagaaggcgctgaagttatgctggaaccatcggaatcaaatgagtggtgtatagctgtgaagatacatggtgtcaatagaatatctctgaagccttcggagcagaggttttatgttgttaaccggttcacccatgcctatattttggcagttgatgatggattgaagattgagttctctgataaatgggactggcttttgtttaaggagttgcaaattgagggtcgggagcgcaattcccagggaaagatgataccaattcctggtgtaaatgaggtttctgatgacatgggagtgattggaacatatcctttttcacgccctgtgccagactatatcagaatggcggatgatgaggttgggcgagctctctcaagggactctgtatatgatctggattctgaggatgaacagtggctcacccagttgaatcattcagattctgacagaaaaagcgcacatcttaatcatatttcttatgaagattttgaaaagatgattaccacgtttgaaaaggatgctttcaacaaccctgaaggaactagtgatttggatcagattctttccagataccctactttggaaaaggaccataatgtccttgctgtgcatgaatattggataaacaagagatataagaaaggtgtaccactgctaaggatattgcaggtattttttgactttatcccttccccaaatattaatacaaagctggaaccttcacaaagattaccctctattgtctgcatatcctgaacttctggttatattttctaaatgttaaccttcttgatcattagggtgcaacactaagacgaggacaactgtcacaaagatctattaagaaaaaaagatctttcaagagacaaagaagccaagctggccgtggaaagcctgacatatgcttgcaaggtactgatgttttctccttgatgtctatcttactagagaattgggaccgccattggcgtggcccttcacttagttgaagcaagaaagcatcataaaagatacaagaagcttctttatccatttgtccgaagagtgacctcaattgatttcggaagccatgtgaatctttttttctttcacataagaaaccacatccttctatgcctgaaatatcaagcactcctaatattatatctaatcctacattttagcatctgtaaggttacagtgttagtttccctgcctctggtgtattaccaattttccatatcaaggtgcacaaagttgctaagtagatggccatggtattttagctacattcgatccagttggaaatagttgggtgtaaacatgtgtatatataattactttgataagaatggttacagaaaaatgcatgcataatttgtagtaatcggcaaactaacaaatctattggaaatgataacttctcactccatcccaaaatttatccagaagttgctatattttggggaggaggtggtaataaatttctacttgccacccttagtagatactacacagttaataaaatagcactaattgtggcatatataaatatgaaccttggatataacgtagaatacttgttgtgtaatgttatgtaaggaactctactaaaatatgaagcatgttatatgttctatcatatttttggtgaatgaaccactagtaattttgggcctatgtattcacaaacgaaacaactctcctatgaggcctaacaatagaatgcttgctccttgtgaggagagagtcctcggtgaattactttgggacaggttacagttagctattcagccagtgtctcaaacccttaataaatgctaatgtttagggcaaatagcacttatcatcaaaactatgattcagatgagatccatcatcgcagcttgtcgccaagaccaccttgttcacttgtagctttttcatccttttccaataatagttgcagatttattcttcaccttgtccctctcatctgctaggtgattcaactcctgtagcagcagatctgtgcaatcctagttcacaaacaatacaaactgcaaaacaatccagatcatgcttgatgaaagcatgctccctgtaattatgaagaaactaattactagtaacatttatgaccattgttccactggtacatgcatgcaagtttgtgtaccataacgtagcgtttttttatcccgatgttgcagactaagttcctactgaggggaaataatcttgtgttgtcttttactcgacatgttgatggacagatgctaatggtgctgaagaggaggctttgcggagagttgtggaagccgaacgtgctgcaacacaggcaggagaaacagctgttcgtctgcgcagtagagctcagcgtctcatggcaaaggctgagctggtggcatacaaatctattatggccctcaggattgctgaggctgctaggatatctgactcgtcacgggatcttgttttgacgaccctcgactagtgaagaatgtgagtgagatgttcattgatttgtgtgaagagcatagtagccaatagtttgttttcctcttttttgccgcatcatttcaatgctacgtggtatttggctttcgggtaagctgtgggctgtgggtctcttttttcctccccacctgttttaactttgtgaagccaatctttgtagcggatgcttgaactcaactgtaatctcttgtgtacatgatagtggttagttagattgtgtg</dnaseqindica> |
| External Link(s) |
