Difference between revisions of "Os04g0580700"
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==Annotated Information== | ==Annotated Information== | ||
===Function=== | ===Function=== | ||
| − | + | MADS17 is a member of rice AGL6-like gene. MADS17, caused no morphological abnormalities in the wild-type background, but it enhanced the phenotype in the mfo1 background, so MADS17 has a minor but redundant function with that of MFO1. MADS17 plays minor but redundant roles with MFO1 in floral development and that its minor functions may not be observed unless the function of MFO1 is severely impaired. To further confirm the role of MADS17, introduced the MFO1i+OM17i double-RNAi cassette into mfo1-2. In these mfo1-2–based double-RNAi plants, although the MFO1expression levels were comparable to those in the MFO1i mfo1-2 plants, the MADS17 expression levels were significantly lower than those in MFO1i mfo1-2 plants. | |
===Expression=== | ===Expression=== | ||
Revision as of 15:27, 8 June 2014
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Contents
Annotated Information
Function
MADS17 is a member of rice AGL6-like gene. MADS17, caused no morphological abnormalities in the wild-type background, but it enhanced the phenotype in the mfo1 background, so MADS17 has a minor but redundant function with that of MFO1. MADS17 plays minor but redundant roles with MFO1 in floral development and that its minor functions may not be observed unless the function of MFO1 is severely impaired. To further confirm the role of MADS17, introduced the MFO1i+OM17i double-RNAi cassette into mfo1-2. In these mfo1-2–based double-RNAi plants, although the MFO1expression levels were comparable to those in the MFO1i mfo1-2 plants, the MADS17 expression levels were significantly lower than those in MFO1i mfo1-2 plants.
Expression
Please input expression information here.
Evolution
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You can also add sub-section(s) at will.
Labs working on this gene
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References
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Structured Information
| Gene Name |
Os04g0580700 |
|---|---|
| Description |
MADS box transcription factor MADS17 |
| Version |
NM_001060184.1 GI:115460097 GeneID:4336762 |
| Length |
5870 bp |
| Definition |
Oryza sativa Japonica Group Os04g0580700, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 4:29706752..29712621 |
| Sequence Coding Region |
29706874..29707070,29709019..29709103,29709507..29709568,29709654..29709753,29710457..29710498 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008397:29706752..29712621 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008397:29706752..29712621 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggatcgatcagagatggggaggggaagggttgagctgaagcgcatcgagaacaagatcaaccggcaggtcaccttctccaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgcggaggtggcgctcatcatcttctccagccgtggcaagctgtacgaattcggtagcgccggaataaacaagacattggaaaagtacaatagttgctgttacaacgctcaaggttcaaatagtgctcttgctggtggtgaacatcagagctggtaccaagagatgtcaaggctcaagactaagcttgaatgtctccaacgctctcagaggcacatgcttggtgaagatcttggaccattgagcataaaggaactgcagcagctggagaagcaacttgagtactcactgtcacaggctcgacaacgaaagacacaaatcatgatggagcaggtcgacgatcttcgccggaaggaacgccagcttggagagctcaataagcaactgaaaaacaagctagaagctgaagccgatagcagcaactgcagatcagccatccaggattcctgggtccatggcaccgtcgtcagtggcggcagagtgctgaatgctcaaccaccaccagatattgactgtgagcctactctgcaaattgggtactatcaatttgtccgtcctgaggcggccaatccaagaagcaatggaggaggaggggatcagaacaacaactttgtgatgggatggcccctctga</cdnaseq> |
| Protein Sequence |
<aaseq>MDRSEMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLC DAEVALIIFSSRGKLYEFGSAGINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSR LKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLR RKERQLGELNKQLKNKLEAEADSSNCRSAIQDSWVHGTVVSGGRVLNAQPPPDIDCEP TLQIGYYQFVRPEAANPRSNGGGGDQNNNFVMGWPL</aaseq> |
| Gene Sequence |
<dnaseqindica>123..319#2268..2352#2756..2817#2903..3002#3706..3747#5108..5149#5309..5448#5536..5632#tagatcatatctcatcccatcatcggtcatattctcctcagcttcatgttgctnagctataggcgaatggttgacaagagtactagttagcttaataatatagctttgcaaaagttgaggnaatggatcgatcagagatggggaggggaagggttgagctgaagcgcatcgagaacaagatcaaccggcaggtcaccttctccaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgcggaggtggcgctcatcatcttctccagccgtggcaagctgtacgaattcggtagcgccgggtaagcgtgtgcatgatccgttcagtaccctaatcgtatgtgattcttgcagatctggtgattaatttctctcttccctttggtttgttttgtttccttccatgggatgcgtattctcgtttgcttcctcagcttaaatccgaaattgtttcttagattttttgttaccaagtatatatatgtgctcgctggtttattttgctatatggttttttgtttctcgctagcgtgcatgtgttttcatacatcttttaggcttaggtaatcttgccggatgtatgcctagctcttgctacttgcatacttgggtaatcttttcataatgaaaatcctccagccctaactcaataaagcacataatatctcttcttcttcttcttcttcagaacctaaagagcattgatttctttcattcgtgcgtgtgcccggcgtgcgcatgtcaggagcagctaggtatatgaggctctgaggcgcaagttttctgattgcaagagtgacttgaaggggaaagtgatggggtctgctgtttccatttagatgccgcaccaagaactttgtttaaatcttttttttcagaattattgcctaatttgatatccatatatttcattcctgcaagtatataacatcttctcttgccatctctcaggtaaattatattacatatgaaccatgcatatgcctctcttttcttttgatgcatttgtgttttcctgaaaggttcgtgttcccgtttaaataaagctttcagatttttttcctgataggtacatgagtttttttttcatttatttgattaaaccctcaaacattatcatcactttagctgcatatatatgaattcgatctttcaaatctcttatgtgtatacgctcttttgcaagattttgtgattctggtattattatttttttcttgttgcattgcctcttgctaatacatgaaggtaaccgagaggggcttatgcacattttgagttgaatgttagtaattgctatatgtattgacgggaaaatcataaatatatatagacgaaaaataactgtgttgattgaaatgcatggatcgaattgaacaccgtttagttgtggaaattcttttatttcttctccggtgatcagtgtgtagggcttctctccagggaccatcagagcaggcgggccatgaaaaaaattttgaataaagtaaatacattacgaaagagttttgtgttattgtgaccggcaactcttgttgctgaacttgctgcttgaacctggtatgcacatgaatatggtggtttttctttttttcatcatagtttattttgcaacatttactttggagtcgccaagaacacacatataaagctttacttagaaatattctttttatttgctaataagtgattcggataagcatatgaataagcgaaacaatgaggctttgtgtccgaattagagcatcattaaacaatttctgaaaacaatttcttcagtagcgatgatcgaaagggattcgttgaactctaacaattattaaaattgttcttgaccacaaattcacctggccatatgattatcattacctattttctgcaattaaatttatgtattttcattctgttatattagtctcctgctgtttaaaattacatatcattctaccttgtcctaatttatgtcaaacatttctatccttgacagtcaatttctagaaatttgtataagttaacaacatgcgaattatatattacaaaagtatttctcatgatgaatctaaaaacataaatcttatgatattaaactatatgaaattttaaattttgatggcaaaacgtacaaatgtttaacttagaacaaaactagaatgcaagtaatttcaaatgcagggcgaagagtagattttattgcattcggctttatgtatgtgagtaagtaacatatcctaaacctatttttgtttgcagaataaacaagacattggaaaagtacaatagttgctgttacaacgctcaaggttcaaatagtgctcttgctggtggtgaacatcaggtattcatagaatagttgtcaaacacacttcggtaaccatattatgtagaatcctttaaagttcaaatatacatatctagacctctttgccagtaatattgtctcaaattcttgagatgcaaggaggatcaatgaagagatatatagtacttaaatattgctgattttaatttgaagattgcaatcaaattctaatatatgtactagttcagtgaataagatattagtacttacattttctaaacctaatgataatatcgcttttttccttgatgcaataaaaattaaacattcagattcatataaaataaaattcaagggtaaataagaacaaaaataaatgcttactattttggattttatcaattattggttttagttttttttcccatttgacccatagagctggtaccaagagatgtcaaggctcaagactaagcttgaatgtctccaacgctctcagaggtactgcactgcatcagctgtttcaggaacacttgaaatgcttcaccacttgaatgtttgggtgttatatttgcatatacaacaggcacatgcttggtgaagatcttggaccattgagcataaaggaactgcagcagctggagaagcaacttgagtactcactgtcacaggctcgacaacgaaaggttatatcaccacacaataaaataagtgtagttccttcaattaccttgttaattaacatacaataatatctgctattatctagtacaatactgtatgcattattctatatatacaacctatatcttgacaaataaaagggatatatactgcaaatatatccatctgatgaattgtaagaaattaaccacttaaggccgtaaatggtgctaaaaaagacaacgcagccgtaatatatataagcaacaaatattgcatgagtgtacgtacttgatcaacaaattttacggcgatctctgctggtagtaggatcaatatctggacctttcatctttacctatccaatatatatttatattactaacttaaccattggtagtagaatattttgtctataggtagtaaaattcataaatcaactgtatataatttctactgataataaaataatatcaataaatatcacaattaataaaagtacttgattgagcaccaagtttatttctataataaaaagacaccataagttttctataattgcttttgcttccttccaacttcggggggacatggtttatatgctcctatgccctgaaatactaaatatgtcagaagaagaagacaacaaagtacagggcttaacttgcatgctcgtccatataaaagttatctaaattttagttgagttctttgtatttatttcagacacaaatcatgatggagcaggtcgacgatcttcgccggaaggtattggaatatctgtcaaatgttgtcgcttttctataaatctgtaacatcgtaattaatcatatgatcaagattactaaaccatatatttgtatgatatgatagcttatcagatctagataattaatcctgaaggttgtggacgtattgctttataattcaatacttgttgcttcagatatggggaatttcaagtgcaccacagagttcgaggacatcaaacattatgctgccattttttcagaatctttcctaaatatttatatatgctttggttattactagggtattccgtgaggaactatatattctctcctttagatgagaatgtatttgttcctgattttactcaatcgtaaaaaaaaaaaggtttatacctaggaaaataaatgtaacaccttataatacagatgcccatctgagtcgctgcgtccgtacctacatttcatacggctttaatgtttatgcgttaatttttcaagttgcaatatggccaccaactattaattaaaaagggatttattttgtcaattatcagaacgaattattgaatcttatcaagaatgaattaattacataccaatattatctatcatgtcacaaaatcattatgatcacaaggagctgtttgcaagacttttagggttaattctttttttcttgctatggctaggggtgatagctgattaaggtccatggatttttttacatccgtatctagcatttgtatatttttagatccagtcttcaaattttatagactaaaaacttgggccaattagcaccctagctgtggctcatatgttgctgcatatactctctttatatatatatatgtgtttgatggtatttacttttaaacataaccattcatattattgaaagaaccgtgcaaatatatagaaatataagtcatgtctaaagtacaaacaaaatggaatagaaggatgaatggtcaaatttatgttaaaaagtcaatggcattagacaaaaaagaaataaagggagtatacatctacctatctagctggaactccaagttctattgtctggaaattggaataggctagctcttgctgacctgtttaactggctttggtggggtgctggtgttccatatgtaatggggatgacattacaccaaaatcgctcagcctttctgcttaatttgcttagtaggagtagtgtagtactcctgaacttgaaccctgtagcatgtcgtttctgataatagaagcgggacagagtgttatgtttttctatcgaaaaaataaaatatagttaatcacatctaataatcctgcctcaaaagtgctagttgtatattccctagttgactgattatctgggctgcctgcaggaacgccagcttggagagctcaataagcaactgaaaaacaaggtcctacttatcgtttccacaattaatttctgcctttcaatttggtggattgggaatactgtacaaccacttctctgttttctagtgttaattagtgtatcttcgaattttgtcatgtcatttcgccatgtagtactaacacatcgccacaccattcagctagaagctgaagccgatagcagcaactgcagatcagccatccaggattcctgggtccatggcaccgtcgtcagtggcggcagagtgctgaatgctcaaccaccaccagatattgactgtgagcctactctgcaaattgggtaagtttggaagatgaatcaaaactaaaacctgatcaatctgatcttccgaaccaacgtgtttgaaaatatgcatgcacgctacaggtactatcaatttgtccgtcctgaggcggccaatccaagaagcaatggaggaggaggggatcagaacaacaactttgtgatgggatggcccctctgaagtccaagcttgctaataaaaacgctggcgtgctataatatatagttcggcaaatgttgaaacacatgtgttctcagtatgtatatttctcccctatccggtggtactcttagcacgtacctatgagtgtatgtttgtacgttatctatactctatgctaggcaaccctatactattatggtaagacgtctatcttttcaatctatctatacgtaccatactaattggcaaattttgt</dnaseqindica> 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