Os06g0712700

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Annotated Information

Function

SPW1, namely OsMADS16, the seven exons and six introns, intron length respectively, 101, 204, 173, 448, 2168, 124 bp. In the mutant spw1-1, the first intron of the last 3 G mutation at nucleotide A; mutant spw1-2, the fifth intron 1 G mutation at nucleotide A (Nagasawa et al ., 2003). OsMADS16 product contains 225 amino acids, containing MADS box (Xiao et al., 2003). SPW1 ABC model of floral organ development belongs in the class B genes homologous with AP3/DEF, from floral organs to determine the function of rice paddles and stamens attributes (Nagasawa et al, 2003;. Xiao et al, 2003.). SPW1 existence of mutual antagonism with the DL, and stamens and carpels attributes common control (Nagasawa et al., 2003).

Expression

MADS6 on gene function and class B or class C gene MADS3 SUPERWOMAN1/MADS16 redundancy, identified three and floral meristem. MADS6 genes by interacting with class D MADS13 to determine carpel / ovule development, and together YABBY DROOPING LEAF genes control palea and floral meristem. Expression analysis showed mads6-1 mutant, in the early stage of flower development, six B-, C-, E-class gene transcript levels decreased, indicating that the key MADS6 early flower development regulator. Furthermore, MADS6 gene MADS8 with Class C motif directly modulating combined phenotype mads6-1 mads58 double mutant phenotype mads6-1 is similar. SPW1, control and development of rice floral organs, mutations of this gene cause abnormal rice floral organs.

Evolution

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Labs working on this gene

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References

1. Haifeng Li;Wanqi Liang;Yun Hua;Lu Zhu;Changsong Yin;Jie Xu;Ludovico Dreni;Martin M. Kater;Dabing Zhang

 Rice MADS6 Interacts with the Floral Homeotic Genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in Specifying Floral Organ Identities and Meristem Fate
 The Plant Cell, 2011, 23(7): 2536-2552

Structured Information

Gene Name	Os06g0712700
Description	MADS-box protein SPW1
Version	NM_001065095.1 GI:115469921 GeneID:4342047
Length	4370 bp
Definition	Oryza sativa Japonica Group Os06g0712700, complete gene.
Source	Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome	Chromosome 6
Location	Chromosome 6:31050629..31054998
Sequence Coding Region	31050947..31051117,31051241..31051285,31053404..31053445,31053894..31053991,31054161..31054224 ,31054429..31054495,31054597..31054784
Expression	GEO Profiles:Os06g0712700
Genome Context	<gbrowseImage1> name=NC_008399:31050629..31054998 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>
Gene Structure	<gbrowseImage2> name=NC_008399:31050629..31054998 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>
Coding Sequence	<cdnaseq>atggggaggggcaagatcgagatcaagcggatcgagaacgcgaccaacaggcaggtgacctactcgaagcgccgcacggggatcatgaagaaggccagggagctcaccgtgctctgcgacgcccaggtcgccatcatcatgttctcctccaccggcaagtaccacgagttctgcagcccttccaccgacatcaaggggatctttgaccgctaccagcaagccatcggcaccagcctttggatcgagcagtatgagaatatgcagcgcacgctgagccatctcaaggacatcaaccgcaacctgcgcaccgagatcaggcaaaggatgggagaagatctggacgggctggagttcgacgagctgcgcggtcttgagcaaaatgtcgatgccgccctcaaggaggttcgccacaggaagtatcatgtgatcaccacacagactgaaacctacaagaaaaaggtgaagcactcctacgaggcgtacgagactctgcagcaggagctggggttgcgcgaggagccggcgttcgggttcgtggacaacaccggcggcgggtgggacggcggcgccggcgccggcgcggcggcggacatgttcgccttccgcgtggtgcccagccagcccaacctgcacggcatggcctacggcggcaaccacgacctgcgcctcggttga</cdnaseq>
Protein Sequence	<aaseq>MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVA IIMFSSTGKYHEFCSPSTDIKGIFDRYQQAIGTSLWIEQYENMQRTLSHLKDINRNLR TEIRQRMGEDLDGLEFDELRGLEQNVDAALKEVRHRKYHVITTQTETYKKKVKHSYEA YETLQQELGLREEPAFGFVDNTGGGWDGGAGAGAAADMFAFRVVPSQPNLHGMAYGGN HDLRLG</aaseq>
Gene Sequence	<dnaseqindica>3882..4052#3714..3758#1554..1595#1008..1105#775..838#504..570#215..402#gagttgggaatccgttgctgtcgtacgtctcgtctatggcgtgctgtatgtcctctccttctttcttcctttccaaataagcactcctcttcttcctcctcctcctcctccgcctcctcttctcattcccaactcatcgatccatcagtagctagctagctagctagctagctgcattgtccggcgagagagatagctgctgcagggggcggccatggggaggggcaagatcgagatcaagcggatcgagaacgcgaccaacaggcaggtgacctactcgaagcgccgcacggggatcatgaagaaggccagggagctcaccgtgctctgcgacgcccaggtcgccatcatcatgttctcctccaccggcaagtaccacgagttctgcagcccttccaccgagtctgtatctccatctccacttcgactctatgatcttctccatcctgattatactatatatataactgcatcatatcgatcttaattgcatcctgctgcagcatcaaggggatctttgaccgctaccagcaagccatcggcaccagcctttggatcgagcagtatgaggttgatttgtttaatttcttcctttcttcccctccgctagctgcaaccaagctgctcacttcgattctctccttatgatttgttttctcatcttttgctcgattcgtcttctcaattttcactccagtttctttcctttaattctatgtcccaactctcttctgctcgttaattggtttggtttggtttgttttcatccatcagaatatgcagcgcacgctgagccatctcaaggacatcaaccgcaacctgcgcaccgagatcaggccagcacaaatttcacccctttaattactttcctctcttctccttaattaatccctcttagtatatagttactgggggattttagcttgaacaagagatccaaatttacaacgtttttcaagatatgtactgctggatctgaatataaacaaccatacgtgtgtgcaggcaaaggatgggagaagatctggacgggctggagttcgacgagctgcgcggtcttgagcaaaatgtcgatgccgccctcaaggaggttcgccacaggaaggcatgcacgcacgcacgccctaattaaactacgaaccctaatttgctcaatactaaaacgtcgttcaattccttaattcaagggtggtagatccttgtattttgtgcacactagatctacggttcatgatcagatccgtgcatatttcatgcttctcgctacagatctacgagtttcttgaacccttcttggcttcttgcatgtgtggaaattatattgatggtttttaatttggcctcggttgcttgctcgtattaaacaagataattttaaggtttatgctttatagaaacataatttatgtgtactattgttttatcttacaactagtaggatgtatgctcattgatctattggactgtaacatattaaactttctgcttcatgtatcctagccttttaatttgtttcagttttctcatgattaattcggttttaatttctgcagtatcatgtgatcaccacacagactgaaacctacaagaaaaaggtcaggaataagccatgcccattttctcagtatttgtttctggttaaatttatatatatatatatatatatatatatatatatatatatatatatatatatatataccaccaattttattccttcctcttgaaactgttggctataggtgtacatctactgtggattttattccttcccttggaagctgttgactatgtgtgcatctcttgtggatatataggccggatttaatcaatccattatcttaaaaaaaatactgccaatattatgcctaataatgcagcaatattagtatatatatgtatgttcttctggtgcagtaataagggtatatctagatatctgcacaagcctatataagtgtatatttatcttccccaattccttactttaattgcttcacttttgtggccaccatcactgcttaaatttgcttagtttggccaataagttcgcacttgcagtgtcgtctatgttcacatgtctttctgaagagctatatgctatccctttgattgtacgttgttcacatttttcctgacgatattaagttcctccgggtaaaatatacattgatcccgtgaactaaattgcactcacccaataacctgcattttgccttattgcgtgctaatttagccatatacatagccatggatctcccagtttctgtacttgaacagtcgaagctagctaagctagcccttgaatcgatcaaaagccaaaataaaagatctgacaagcaccatgacgcctctcaaccgaaacatgcatgctaatgtacagtgtgcattaccatgcgtgtctgtgcatttccatactatctacacatcaatatatttgatcgaggctacctgatctacacatctagtctaagctatacacatagccatcagtagatgtacatcgatgttaattggagcatgcattgtcatgtgcattcctatacattacatgatgaacaacgcacgcaatataatgcgatctgcgatgcagttttctctgtcttttttgcaagctagaactcatgacaaacagcaaaggacagtagtatgaattgggcatgtatctgcatatatatgcgtatatgtatctcctgttaagcaaacaactaagccaggatcggtagctatataaactagctgtacctagagacgatgaagcatgcatgcttattttggtcccccggctatttaggagagtagcatgtcaaacacggatttttatgagagattgcatcgcggcgtgataccttttggtagataagggacggcattgaggctttatgatttgcaagaatttggaaaccaaaccattacggccgctggcttactgaatctttagtggggtgtactactaattaattactcagcttgaacaaccgagcaaaagcgaatacttttgactttacattcaatcgactttaatagggagtactctttgttcattgttttgtagttttacctgcggttagctggtcagaattaaacatatatatatatatatatatatatatatatatatatatatatatatatatgtagctgaataagtaattcattgcatcgaggggattgttaaccattcatgcatatctaactgtgttgtcggctgaggtgaaaattaaccagttcaagcatgcatgttggcatatagtataagctagcacatcacaaattcacaatcaccttcaagtgtttaatttcgctgcattagctactcctttggtcttgttacgtgagagagctgacagagagtagtgtataaactctgaacaaagaactgcactttgatatggagctagctagaagatgactttgaatctgtatatatatctttgtcattgtgatatgggagaggataacttgcttaaattttatgtgagtgactgttcatagaaataaacttgacgattgtttcttgtgtgctatagcatgctgtccgaagatgcaaacatgtatatatacacattgcagtgacactctacttttacttgcacacatatgctggaccctgtgtctatacatgcatgcacatgatataatttgtctgtctatagctaatagagattggtttctacattaattgatccggtgtgtgcatgcatataatgcaggtgaagcactcctacgaggcgtacgagactctgcagcaggagctggtaacctatcaagcatttttttttcagttatagccagaaaattatttgttaattagtttctccaatgcaggctagctaatttgattgaactctactgttggatgaatgtttgaattaattcaggggttgcgcgaggagccggcgttcgggttcgtggacaacaccggcggcgggtgggacggcggcgccggcgccggcgcggcggcggacatgttcgccttccgcgtggtgcccagccagcccaacctgcacggcatggcctacggcggcaaccacgacctgcgcctcggttgatatatcatcgccgccgccgccgccgccgccggcggcctgctcgtcgccggccggccggccgccggacaccgtatcatcgctcgatctagataacaagccgacgaataaattgcagtgctcgtgttacttacctgcatgcgcatgcattattatcgatcaacgcaagaacttcatttcatttaccaaaccacttgatgtgtgctatgatccagcggttaaaccgtgtgttgtctcttgacattttgtaccagttactgatgatgttgtattatgtatgcgtggtgtgcaactgtgcttggataatttcacacttatttg</dnaseqindica>
External Link(s)	NCBI Gene:Os06g0712700, RefSeq:Os06g0712700