Difference between revisions of "Os06g0712700"
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==References== | ==References== | ||
| − | + | 1. Haifeng Li;Wanqi Liang;Yun Hua;Lu Zhu;Changsong Yin;Jie Xu;Ludovico Dreni;Martin M. Kater;Dabing Zhang | |
Rice MADS6 Interacts with the Floral Homeotic Genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in Specifying Floral Organ Identities and Meristem Fate | Rice MADS6 Interacts with the Floral Homeotic Genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in Specifying Floral Organ Identities and Meristem Fate | ||
The Plant Cell, 2011, 23(7): 2536-2552 | The Plant Cell, 2011, 23(7): 2536-2552 | ||
Revision as of 08:06, 9 June 2014
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Contents
Annotated Information
Function
SPW1, namely OsMADS16, the seven exons and six introns, intron length respectively, 101, 204, 173, 448, 2168, 124 bp. In the mutant spw1-1, the first intron of the last 3 G mutation at nucleotide A; mutant spw1-2, the fifth intron 1 G mutation at nucleotide A (Nagasawa et al ., 2003). OsMADS16 product contains 225 amino acids, containing MADS box (Xiao et al., 2003). SPW1 ABC model of floral organ development belongs in the class B genes homologous with AP3/DEF, from floral organs to determine the function of rice paddles and stamens attributes (Nagasawa et al, 2003;. Xiao et al, 2003.). SPW1 existence of mutual antagonism with the DL, and stamens and carpels attributes common control (Nagasawa et al., 2003).
Expression
MADS6 on gene function and class B or class C gene MADS3 SUPERWOMAN1/MADS16 redundancy, identified three and floral meristem. MADS6 genes by interacting with class D MADS13 to determine carpel / ovule development, and together YABBY DROOPING LEAF genes control palea and floral meristem. Expression analysis showed mads6-1 mutant, in the early stage of flower development, six B-, C-, E-class gene transcript levels decreased, indicating that the key MADS6 early flower development regulator. Furthermore, MADS6 gene MADS8 with Class C motif directly modulating combined phenotype mads6-1 mads58 double mutant phenotype mads6-1 is similar. SPW1, control and development of rice floral organs, mutations of this gene cause abnormal rice floral organs.
Evolution
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Labs working on this gene
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References
1. Haifeng Li;Wanqi Liang;Yun Hua;Lu Zhu;Changsong Yin;Jie Xu;Ludovico Dreni;Martin M. Kater;Dabing Zhang
Rice MADS6 Interacts with the Floral Homeotic Genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in Specifying Floral Organ Identities and Meristem Fate The Plant Cell, 2011, 23(7): 2536-2552
<ref name="ref2"> 2. Han Xiao;Yun Wang;Daofeng Liu;Wemming Wang;Xiaobing Li;Xianfeng Zhao;Jichen Xu;Wenxue Zhai;Lihuang Zhu
Functional analysis of the rice AP3 homologue OsMADS16 by RNA interference Plant Molecular Biology, 2003, 52(5): 957-966
Structured Information
| Gene Name |
Os06g0712700 |
|---|---|
| Description |
MADS-box protein SPW1 |
| Version |
NM_001065095.1 GI:115469921 GeneID:4342047 |
| Length |
4370 bp |
| Definition |
Oryza sativa Japonica Group Os06g0712700, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 6:31050629..31054998 |
| Sequence Coding Region |
31050947..31051117,31051241..31051285,31053404..31053445,31053894..31053991,31054161..31054224 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008399:31050629..31054998 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008399:31050629..31054998 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggggaggggcaagatcgagatcaagcggatcgagaacgcgaccaacaggcaggtgacctactcgaagcgccgcacggggatcatgaagaaggccagggagctcaccgtgctctgcgacgcccaggtcgccatcatcatgttctcctccaccggcaagtaccacgagttctgcagcccttccaccgacatcaaggggatctttgaccgctaccagcaagccatcggcaccagcctttggatcgagcagtatgagaatatgcagcgcacgctgagccatctcaaggacatcaaccgcaacctgcgcaccgagatcaggcaaaggatgggagaagatctggacgggctggagttcgacgagctgcgcggtcttgagcaaaatgtcgatgccgccctcaaggaggttcgccacaggaagtatcatgtgatcaccacacagactgaaacctacaagaaaaaggtgaagcactcctacgaggcgtacgagactctgcagcaggagctggggttgcgcgaggagccggcgttcgggttcgtggacaacaccggcggcgggtgggacggcggcgccggcgccggcgcggcggcggacatgttcgccttccgcgtggtgcccagccagcccaacctgcacggcatggcctacggcggcaaccacgacctgcgcctcggttga</cdnaseq> |
| Protein Sequence |
<aaseq>MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVA IIMFSSTGKYHEFCSPSTDIKGIFDRYQQAIGTSLWIEQYENMQRTLSHLKDINRNLR TEIRQRMGEDLDGLEFDELRGLEQNVDAALKEVRHRKYHVITTQTETYKKKVKHSYEA YETLQQELGLREEPAFGFVDNTGGGWDGGAGAGAAADMFAFRVVPSQPNLHGMAYGGN HDLRLG</aaseq> |
| Gene Sequence |
<dnaseqindica>3882..4052#3714..3758#1554..1595#1008..1105#775..838#504..570#215..402#gagttgggaatccgttgctgtcgtacgtctcgtctatggcgtgctgtatgtcctctccttctttcttcctttccaaataagcactcctcttcttcctcctcctcctcctccgcctcctcttctcattcccaactcatcgatccatcagtagctagctagctagctagctagctgcattgtccggcgagagagatagctgctgcagggggcggccatggggaggggcaagatcgagatcaagcggatcgagaacgcgaccaacaggcaggtgacctactcgaagcgccgcacggggatcatgaagaaggccagggagctcaccgtgctctgcgacgcccaggtcgccatcatcatgttctcctccaccggcaagtaccacgagttctgcagcccttccaccgagtctgtatctccatctccacttcgactctatgatcttctccatcctgattatactatatatataactgcatcatatcgatcttaattgcatcctgctgcagcatcaaggggatctttgaccgctaccagcaagccatcggcaccagcctttggatcgagcagtatgaggttgatttgtttaatttcttcctttcttcccctccgctagctgcaaccaagctgctcacttcgattctctccttatgatttgttttctcatcttttgctcgattcgtcttctcaattttcactccagtttctttcctttaattctatgtcccaactctcttctgctcgttaattggtttggtttggtttgttttcatccatcagaatatgcagcgcacgctgagccatctcaaggacatcaaccgcaacctgcgcaccgagatcaggccagcacaaatttcacccctttaattactttcctctcttctccttaattaatccctcttagtatatagttactgggggattttagcttgaacaagagatccaaatttacaacgtttttcaagatatgtactgctggatctgaatataaacaaccatacgtgtgtgcaggcaaaggatgggagaagatctggacgggctggagttcgacgagctgcgcggtcttgagcaaaatgtcgatgccgccctcaaggaggttcgccacaggaaggcatgcacgcacgcacgccctaattaaactacgaaccctaatttgctcaatactaaaacgtcgttcaattccttaattcaagggtggtagatccttgtattttgtgcacactagatctacggttcatgatcagatccgtgcatatttcatgcttctcgctacagatctacgagtttcttgaacccttcttggcttcttgcatgtgtggaaattatattgatggtttttaatttggcctcggttgcttgctcgtattaaacaagataattttaaggtttatgctttatagaaacataatttatgtgtactattgttttatcttacaactagtaggatgtatgctcattgatctattggactgtaacatattaaactttctgcttcatgtatcctagccttttaatttgtttcagttttctcatgattaattcggttttaatttctgcagtatcatgtgatcaccacacagactgaaacctacaagaaaaaggtcaggaataagccatgcccattttctcagtatttgtttctggttaaatttatatatatatatatatatatatatatatatatatatatatatatatatatatataccaccaattttattccttcctcttgaaactgttggctataggtgtacatctactgtggattttattccttcccttggaagctgttgactatgtgtgcatctcttgtggatatataggccggatttaatcaatccattatcttaaaaaaaatactgccaatattatgcctaataatgcagcaatattagtatatatatgtatgttcttctggtgcagtaataagggtatatctagatatctgcacaagcctatataagtgtatatttatcttccccaattccttactttaattgcttcacttttgtggccaccatcactgcttaaatttgcttagtttggccaataagttcgcacttgcagtgtcgtctatgttcacatgtctttctgaagagctatatgctatccctttgattgtacgttgttcacatttttcctgacgatattaagttcctccgggtaaaatatacattgatcccgtgaactaaattgcactcacccaataacctgcattttgccttattgcgtgctaatttagccatatacatagccatggatctcccagtttctgtacttgaacagtcgaagctagctaagctagcccttgaatcgatcaaaagccaaaataaaagatctgacaagcaccatgacgcctctcaaccgaaacatgcatgctaatgtacagtgtgcattaccatgcgtgtctgtgcatttccatactatctacacatcaatatatttgatcgaggctacctgatctacacatctagtctaagctatacacatagccatcagtagatgtacatcgatgttaattggagcatgcattgtcatgtgcattcctatacattacatgatgaacaacgcacgcaatataatgcgatctgcgatgcagttttctctgtcttttttgcaagctagaactcatgacaaacagcaaaggacagtagtatgaattgggcatgtatctgcatatatatgcgtatatgtatctcctgttaagcaaacaactaagccaggatcggtagctatataaactagctgtacctagagacgatgaagcatgcatgcttattttggtcccccggctatttaggagagtagcatgtcaaacacggatttttatgagagattgcatcgcggcgtgataccttttggtagataagggacggcattgaggctttatgatttgcaagaatttggaaaccaaaccattacggccgctggcttactgaatctttagtggggtgtactactaattaattactcagcttgaacaaccgagcaaaagcgaatacttttgactttacattcaatcgactttaatagggagtactctttgttcattgttttgtagttttacctgcggttagctggtcagaattaaacatatatatatatatatatatatatatatatatatatatatatatatatatgtagctgaataagtaattcattgcatcgaggggattgttaaccattcatgcatatctaactgtgttgtcggctgaggtgaaaattaaccagttcaagcatgcatgttggcatatagtataagctagcacatcacaaattcacaatcaccttcaagtgtttaatttcgctgcattagctactcctttggtcttgttacgtgagagagctgacagagagtagtgtataaactctgaacaaagaactgcactttgatatggagctagctagaagatgactttgaatctgtatatatatctttgtcattgtgatatgggagaggataacttgcttaaattttatgtgagtgactgttcatagaaataaacttgacgattgtttcttgtgtgctatagcatgctgtccgaagatgcaaacatgtatatatacacattgcagtgacactctacttttacttgcacacatatgctggaccctgtgtctatacatgcatgcacatgatataatttgtctgtctatagctaatagagattggtttctacattaattgatccggtgtgtgcatgcatataatgcaggtgaagcactcctacgaggcgtacgagactctgcagcaggagctggtaacctatcaagcatttttttttcagttatagccagaaaattatttgttaattagtttctccaatgcaggctagctaatttgattgaactctactgttggatgaatgtttgaattaattcaggggttgcgcgaggagccggcgttcgggttcgtggacaacaccggcggcgggtgggacggcggcgccggcgccggcgcggcggcggacatgttcgccttccgcgtggtgcccagccagcccaacctgcacggcatggcctacggcggcaaccacgacctgcgcctcggttgatatatcatcgccgccgccgccgccgccgccggcggcctgctcgtcgccggccggccggccgccggacaccgtatcatcgctcgatctagataacaagccgacgaataaattgcagtgctcgtgttacttacctgcatgcgcatgcattattatcgatcaacgcaagaacttcatttcatttaccaaaccacttgatgtgtgctatgatccagcggttaaaccgtgtgttgtctcttgacattttgtaccagttactgatgatgttgtattatgtatgcgtggtgtgcaactgtgcttggataatttcacacttatttg</dnaseqindica> |
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