Os08g0101000

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Annotated Information

Function

Please input function information here. Transcription factor IDEF1 early response to iron deficiency in rice necessary to express the late vegetative stage embryos while rich protein gene induction. Higher plants by regulating the expression of genes related to iron to maintain the plants get iron homeostasis of body iron content. IDEF1 to adjust the response of rice to iron deficiency by identifying the response CATGC sequence cis-elements IDE1. Medium to induce the expression of iron-deficiency treatment IDEF and suppress the expression of the two types of transgenic plants was found, and induce the expression of plant IDEF1 compared to suppress the expression of plant IDEF1 early iron deficiency is very sensitive.

===Expression=== Please input expression information here.

IDEF1 cDNA full length 1704bp, contains nine exons and encodes a transcription factor of 362 amino acids, B3 domain-containing products. IDEF1 ABI3/VP1 is a plant-specific transcription factor protein, with the iron deficiency response cis-elements IDE1 the CATGC sequence binding. In the early treatment of iron deficiency, IDEF1 expression of these genes by binding to iron absorption and utilization of the relevant gene promoter elements regulate the CATGC mediated early plant response to iron deficiency (Kobayashi et al., 2007 & 2009).

By IDEF1 regulate gene promoter also contains the necessary regulation of gene expression in seed maturation cis-elements CATGCA. Some late embryogenesis abundant protein coding genes such as Osem, their expression in iron plant roots and / or leaves are induced, while expression is dependent on IDEF1, described IDEF1 in the regulation of seed maturation-related genes in vegetative organs of iron deficiency Expression function (Kobayashi et al., 2009).

IDEF1 involved in the regulation of gene expression induced by Fe deficiency by, for maintaining the body's balance Fe plays an important role. IDEF1 histidine - arginine and proline-rich region of direct binding of divalent metal, balanced feel of metal ions in the cell (Kobayashi et al 2012.).

Evolution

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Labs working on this gene

Please input related labs here. Quantitative RT-PCR for the early treatment of iron deficiency was found at each time point for analysis, IDEF1 expression of genes associated with the use of iron as OsIRO2, OsYSL15, OsIRT1, OsYSL2, OsNAS1, OsNAS2, OsNAS3, OsDMAS1 expression was positively correlated, however, in dealing with the this positive late correlation is not obvious. Microarray analysis and information indicating that these genes are upregulated by IDEF1, especially in the early treatment of iron deficiency, such as the promoter region of the gene sequence and the like contain CATGC IDE1 elements. These results suggest that plants respond to iron deficiency early and late stage presence stress response process, which IDEF1 involved in the early response process. By IDEF1 regulated gene promoter also contains regulate seed maturation cis-elements RY (CATGCA) required for gene expression. Some late embryogenesis abundant protein coding genes such as Osem, their expression in iron plant roots and / or leaves are induced, while expression is dependent on IDEF1, described IDEF1 in the regulation of seed maturation-related genes in vegetative organs of iron deficiency expression function (Kobayashi et al., 2007 & 2009).

References

Please input cited references here. 1. Takanori Kobayashi;Reiko Nakanishi Itai;May Sann Aung;Takeshi Senoura;Hiromi Nakanishi;Naoko K. Nishizawa

 The rice transcription factor IDEF1 directly binds to iron and other divalent metals for sensing cellular iron status
 The Plant Journal, 2012, 69(1): 81-91

Structured Information

Gene Name	Os08g0101000
Description	Transcriptional factor B3 family protein
Version	NM_001067292.1 GI:115474320 GeneID:4344415
Length	3946 bp
Definition	Oryza sativa Japonica Group Os08g0101000, complete gene.
Source	Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome	Chromosome 8
Location	Chromosome 8:62575..66520
Sequence Coding Region	63028..63075,63607..63683,63765..63811,64155..64255,64363..64455 ,64765..64887,64984..65102,65501..65857,66235..66358
Expression	GEO Profiles:Os08g0101000
Genome Context	<gbrowseImage1> name=NC_008401:62575..66520 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>
Gene Structure	<gbrowseImage2> name=NC_008401:62575..66520 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>
Coding Sequence	<cdnaseq>atggggcaaatggacggcggcgacggcggcggcggcggccacccctaccactaccaggctctcctggccgccgtccaccagcagaccgtcccctttcccaatcccttccccgccccctcctccggagccgagcccccccacccgcacaaccacaaccacaaccacaatcacaaccacaatattcacaattctcacaatcacaaccacaatcacaatgctgctcctcacccttgtcacactcccactcccactcccactcccagaggtttcgccgactggagcgcctccaccagcgccttcacctcccttgccgcgcactcttctactgcccccagcaatgccgttcactacagcttctccccctgctatgccttctggacacattacatgctcaacaagaacgcctaccccacctccttccctgcgccacacgacgaccacctgcgccttgccaacaacaatcatcctagagacgcaccaggtcctgcatccagctacggggtcgagtcttttacttcaccgtccatggcaccgaatatttgcacccacatgcctcccatagaaggacccatatctgccaaggaagataagaaaccagagattttgcctagagtggttaagagcagtgatgaattggaaaccagaaacagcaatgttgaatttcactctgagacagttggtactctccctgagtcgaagcaaggccatgacagtcgtgctactaaactactcaactcgggagaataccaagtcattctgcgcaaggagctgacaaagagtgatgttggaaatgttggaagaattgtgctacccaagaaggatgcagaggctagtcttccacctttgttgcaaagggatcctttgatactgcacatggacgacatggtgctcccagtgacatggaagtttaagtacaggtactggccaaataacaaaagcagaatgtacattctggattctgcaggtgaatttctgaagacacatggtcttcaggctggggatgtcatcattatctacaaaaacttggctcctggcaaatttattatccgaggagagaaggccattcatcagcagacaacaaatccctag</cdnaseq>
Protein Sequence	<aaseq>MGQMDGGDGGGGGHPYHYQALLAAVHQQTVPFPNPFPAPSSGAE PPHPHNHNHNHNHNHNIHNSHNHNHNHNAAPHPCHTPTPTPTPRGFADWSASTSAFTS LAAHSSTAPSNAVHYSFSPCYAFWTHYMLNKNAYPTSFPAPHDDHLRLANNNHPRDAP GPASSYGVESFTSPSMAPNICTHMPPIEGPISAKEDKKPEILPRVVKSSDELETRNSN VEFHSETVGTLPESKQGHDSRATKLLNSGEYQVILRKELTKSDVGNVGRIVLPKKDAE ASLPPLLQRDPLILHMDDMVLPVTWKFKYRYWPNNKSRMYILDSAGEFLKTHGLQAGD VIIIYKNLAPGKFIIRGEKAIHQQTTNP</aaseq>
Gene Sequence	<dnaseqindica>3446..3493#2838..2914#2710..2756#2266..2366#2066..2158#1634..1756#1419..1537#664..1020#163..286#ctcttcttcctcctcctggggcctagccgcctaggggggttgtggcctgcgactgcgacttcttcctctgccttctgctctctgcctctgagtatatggaatatggtgtgtgcgtgaagagaaattaagtgagggaggggaaagcgagcgaacagggcaacaatggggcaaatggacggcggcgacggcggcggcggcggccacccctaccactaccaggctctcctggccgccgtccaccagcagaccgtcccctttcccaatcccttccccgccccctcctccggtactctctctctctctctctacaccttcttctttcttacctcaaggaatgttagggcagcaggtaggcaggcagaccaccaaaattcagatctttttctttatctattactactatactatactattattaaaaaggaacaagagaatcttgaggtccttgtttaccatttattaatctagagatcccctcccctcccctcccctcccctccgcttctgcttgattgatttcattttgggtctactcctactatgtatgtattgtatttagggtgatcaatcattcctcactctgtctattcaattcattcacttcacttaattggcccatctatgtatgtatgtaaatgtaattgaccatgtgcttggattgcaggagccgagcccccccacccgcacaaccacaaccacaaccacaatcacaaccacaatattcacaattctcacaatcacaaccacaatcacaatgctgctcctcacccttgtcacactcccactcccactcccactcccagaggtttcgccgactggagcgcctccaccagcgccttcacctcccttgccgcgcactcttctactgcccccagcaatgccgttcactacagcttctccccctgctatgccttctggacacattacatgctcaacaagaacgcctaccccacctccttccctgcgccacacgacgaccacctgcgccttgccaacaacaatcatcctagagacgcaccaggtacgttaaaagctatctcctttccaactaaaccagcatgtactgcattgcctttttttccttttccttttaaagcaataaccaaaattaatcttccgttgcgttgttcagagctacagatgttgcttgtaacaactaggaatttttaccgacctagctcattttaattattcatgtgcctctgatgttgaacaagtaggtccatgaggcatttacattattcctctccatgcttccatcaatatgggtagtacatctaagctactgtattccactttggcattagctaatagccaggttttctcagtcatgtacatatggggcagctatttgcgtcccgccaaattctttcacccagccatcctcacttttttccacatatcctgttttaattacaggtcctgcatccagctacggggtcgagtcttttacttcaccgtccatggcaccgaatatttgcacccacatgcctcccatagaaggacccatatctgccaaggaagataagaaaccagaggtatatacatcagaacattcaagatttggaaaacccttccagttttcatcatcctccataacacataatctaactaccgtaatggatgctaaccagattttgcctagagtggttaagagcagtgatgaattggaaaccagaaacagcaatgttgaatttcactctgagacagttggtactctccctgagtcgaagcaaggccatgacagtcgtgctactgtgagtaacacactacacttaacatgctgtctgtatctgatttactacacaaatttctatcttgcatttaatctacattaggcaagtacatagcataagtaatggagcaagtatctatcaattactcaatgccgatatagtcatttgagcagaagggcaaatgaagcagcaattccttactagtttagtaattcaagtagcttgtaaagatgattagccaaaacactgatgcagtacacaggcacatacttctgtcataattagcaacttcatttcctttgtgttcatgggagtgtgcttttatgccagaaactactcaactcgggagaataccaagtcattctgcgcaaggagctgacaaagagtgatgttggaaatgttggaagaattgtgctacccaaggtgtgttccgtatttctgtctcttggaagttctctagtatcattctgtgagaactttcatgtggtctaaactatgcttcataatgtaactgtctgactttatttcagaaggatgcagaggctagtcttccacctttgttgcaaagggatcctttgatactgcacatggacgacatggtgctcccagtgacatggaagtttaagtacaggtgcctttcctgccatcttatgacatctctcacatgcgatttctgaaagacaacaaagaaaaaatggttctgaattgcaatgacttaacaagatgcctagattaagaaaaagtgggaggttgaaggcactgtatgcattaagttccacagcatgtttaggaatctgaaatttgtaaagcagttcataggttcatacatcttgtggcagctgcctgattgctaattctggttcggttacatgatcagttttcacaggatggagaaaccgatacattgctgcctaacctagatatactctagcacttgctactactaattcacagagtcaacgatgctatttcaggtactggccaaataacaaaagcagaatgtacattctggattctgcaggtatgattcaacatggaaagtattgagtatttcctgcggaagtggacatggtagattgatatttcgtattcatattggcaggtgaatttctgaagacacatggtcttcaggctggggatgtcatcattatctacaaaaacttggctcctggcaaatttgtatgcaacccttttctttcctgtttcttcctttttgtatattgcatatctgacgtcagcatttatggcttgcaaatctcaatcatcgcttgacataactgataaaaatgctcagtacaaaaagttgagaaaccttactaaatactacatccgttttttaatatatgacgcaattgactttttgacaaacgtttgatcatttgtcttattcaaattttttgtgcaaatatatatatatatattaagtgatgcttaaagaacatttcacaataaattaagtcacaataaaatatatgataattacatatttttttggaataaaatgaatagtcaaacatatctcaaaaagtcaacggtgtcatatattaaaaaacagagggagtaaaccaaaatgacaaacatatagatcaccactcatgaatattctgtgggatgcactcaaagttgccatctccgttcattttccctgaaaagtatgttaataacgattcttcgcatatcttattggacccttgtgttttttttacaaagattatccgaggagagaaggccattcatcagcagacaacaaatccctagatgcatttggggttaattgcaacagtgttagttgatgcatttgaagggaaggacgtggacttaccataagttggcaatccaggagaagttgaaagtgtcatcgatttttatatcactggtggccaccatcacatggacaaagattaaagcgcatgcagcttggacctgtttaactctgaatgaatgaggacgaaaaaaagacaagattggtagagtattggaagtgttggcaatgggcttctacagcttatcttgggttgagaaaagcacttgtcagtttatttaattcagttatgttggggagcttgacttgtagttttcagaacaatatatttgcagcttctgtaaatatttttggatctataagataaaagagagtggtgtgtgattttgcttttgatgtcatccatctatttctcatactaatgccaggaatgtctgttcattgtcagc</dnaseqindica>
External Link(s)	NCBI Gene:Os08g0101000, RefSeq:Os08g0101000