Difference between revisions of "Os01g0182600"
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==Annotated Information== | ==Annotated Information== | ||
===Function=== | ===Function=== | ||
| − | *OsGI,a GI ortholog, regulates flowering time in response to photoperiodic conditions. Mutations in this gene delay flowering in inductive SDs (short-days),whereas flowering is marginally induced under LDs(long-days).In comparison, over expression of OsGI in transgenic rice causes late flowering in both SDs and LDs.In addition, OsGI | + | *''OsGI'',a GI ortholog, regulates flowering time in response to photoperiodic conditions. Mutations in this gene delay flowering in inductive SDs (short-days),whereas flowering is marginally induced under LDs(long-days).In comparison, over expression of OsGI in transgenic rice causes late flowering in both SDs and LDs.In addition, OsGI has function to regulate Hd1, a gene that also shows circadian rhythm [1]. Os-GI affects gene expression of approximately 75% of genes among 27,201 genes and is required for strong amplitudes and proper phase-setting of global gene expression under natural field conditions[2]. The cDNA of OsGI firstly found in se5 mutant that is completely photoperiod-insensitive, the expression patterns of rice and Arabidopsis GI gene are both photoperiodically regulated and are very similar under LD and SD conditions(FIG1)[3]. GI is required for phase-dependent CO transcription through the interaction with FKF1, which leads to cycling DNA binding with one finger (CDF) degradation and consequent derepression of CO. In addition, it has been known that GI protein interacts with ZEITLUPE (ZTL) F-box protein to control the diurnal rhythm of TOC1 protein in regulation of the Arabidopsis circadian clock[4]. Os-GI also has function to maintain bioactive GA level through the regulation of the GA-deactivating enzyme genes in rice, Os-GI represses major |
OsGA2ox genes in order to maintain a proper bioactive GA level, osgi-1 plants showed a semi-dwarf phenotype with elevated OsGA2ox gene expression(FIG2) [4]. | OsGA2ox genes in order to maintain a proper bioactive GA level, osgi-1 plants showed a semi-dwarf phenotype with elevated OsGA2ox gene expression(FIG2) [4]. | ||
Revision as of 13:51, 10 June 2014
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Contents
Annotated Information
Function
- OsGI,a GI ortholog, regulates flowering time in response to photoperiodic conditions. Mutations in this gene delay flowering in inductive SDs (short-days),whereas flowering is marginally induced under LDs(long-days).In comparison, over expression of OsGI in transgenic rice causes late flowering in both SDs and LDs.In addition, OsGI has function to regulate Hd1, a gene that also shows circadian rhythm [1]. Os-GI affects gene expression of approximately 75% of genes among 27,201 genes and is required for strong amplitudes and proper phase-setting of global gene expression under natural field conditions[2]. The cDNA of OsGI firstly found in se5 mutant that is completely photoperiod-insensitive, the expression patterns of rice and Arabidopsis GI gene are both photoperiodically regulated and are very similar under LD and SD conditions(FIG1)[3]. GI is required for phase-dependent CO transcription through the interaction with FKF1, which leads to cycling DNA binding with one finger (CDF) degradation and consequent derepression of CO. In addition, it has been known that GI protein interacts with ZEITLUPE (ZTL) F-box protein to control the diurnal rhythm of TOC1 protein in regulation of the Arabidopsis circadian clock[4]. Os-GI also has function to maintain bioactive GA level through the regulation of the GA-deactivating enzyme genes in rice, Os-GI represses major
OsGA2ox genes in order to maintain a proper bioactive GA level, osgi-1 plants showed a semi-dwarf phenotype with elevated OsGA2ox gene expression(FIG2) [4].
Expression
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Evolution
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- there is some evolutionary conservation between rice circadian clock–related genes and those associated with Arabidopsis circadian clocks,where the circadian clock consists of interlocked subloops, it is also possible that Os-GI is a member of a subloop in rice circadian clocks
Labs working on this gene
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Knowledge Extension
References
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Structured Information
| Gene Name |
Os01g0182600 |
|---|---|
| Description |
GIGANTEA protein |
| Version |
NM_001048755.1 GI:115434923 GeneID:4325329 |
| Length |
9083 bp |
| Definition |
Oryza sativa Japonica Group Os01g0182600, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 1:4328362..4337444 |
| Sequence Coding Region |
4328725..4329030,4329123..4329215,4329333..4329551,4329752..4329820,4329925..4331421 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008394:4328362..4337444 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008394:4328362..4337444 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgtcagcttcaaatgagaagtggattgatgggctccagttctcatcactgttctggcccccaccacaggattcacaacaaaaacaggcacaaattctggcctatgttgagtactttggccagtttacagctgacagtgagcaattccctgaagatatagctcagctaattcaaagttgctatccatcaaaagaaaagcgccttgtagatgaagtattagcaacttttgttcttcatcatcctgagcatggccatgcagttgtgcatccgattctgtcacgcatcatagatgggacactcagttatgatagaaatggtttcccgttcatgtccttcatctctttatttagccatacttctgagaaagagtactcggagcagtgggccttggcctgtggagaaattcttagagttctaactcactacaacaggccaatcttcaaagttgatcaccaacatagtgaagcggaatgtagcagcacatctgatcaggcctcatcatgtgagtctatggagaaaagggctaacggttctccaagaaatgaacctgaccggaagccattgaggccactatctccttggatcacagacatattgcttgctgcacctctgggtattagaagtgactattttagatggtgtggtggagtcatgggaaaatacgcagctggtggagaattgaagcctccaacaactgcttacagccgaggatctgggaagcacccacaacttatgccatccacgcccagatgggctgttgccaatggagctggagttatactaagtgtctgtgatgaggaagtagctcgttatgagacagcaaatttgactgcggcagctgttcctgcacttctattacctccaccgaccacaccattggacgaacatttggttgcggggctccctcctcttgaaccatatgctcgcttgtttcatagatactatgcaattgctactccaagtgctacccaaaggttgctttttggtcttctcgaggcaccaccatcatgggccccagatgcacttgatgcagcagtacagcttgttgaactccttagagcagcggaagattacgattctggcatgcggcttccaaagaactggatgcatcttcatttcctgcgtgctattggaactgcaatgtcaatgagagctggtatcgctgctgatacgtctgctgctttacttttccgaatactctcccaaccgacattactttttcctccactgagacatgccgaaggagttgaactccatcatgagccactaggtggctatgtatcatcgtacaaaaggcagctggaagttcctgcatctgaagccactattgatgccactgcgcaaggcattgcttccatgctatgtgctcatggtcccgatgttgagtggagaatatgtaccatctgggaggctgcgtatggtttgctacctctgagttcatcagcagttgatttgcctgaaattgttgtagctgctccacttcagccacctactttgtcatggagcctatacttgccattgttgaaagtatttgagtatttacctcgtgggagtccatctgaagcatgccttatgagaatttttgtggcaacagttgaagctatactgagaagaacttttccatcagaaacctctgaacaatccaggaaaccaagaagtcaatctaagaaccttgctgttgctgaactccgaacaatgatacattcactctttgtggagtcctgtgcttcaatggaccttgcgtccagattactatttgtagtattaactgtttgcgtcagtcatcaagctttgcctgggggaagtaaaaggccaactggtagtgataatcattcctctgaggaggtcacaaatgattcgagattaaccaatggaagaaacagatgtaagaagagacaaggaccagttgctacattcgactcatacgttctagcagccgtttgtgccttatcttgtgagctccagctgttcccttttatttccaagaatgggaaccattcaaatctgaaggactccataaagatagtcatacctggaaaaaccactggtatcagtaacgagctacacaatagcattagctcagcgattcttcatactcgtagaatacttggcatcttggaagctctgttctccttgaagccatcatctgttggtacttcatggagttatagttcaaatgagattgttgcagcagctatggttgctgctcatgtttctgagttatttcgtcgatccaggccatgcttaaatgcactgtctgcgctgaagcaatgcaagtgggatgctgagatttctaccagggcatcatccctttaccatttgattgacttgcatggtaaaacagtgacctccattgtgaacaaagctgagcctctagaagctcacctgacccttacaccagtaaaaaaggatgaacctcccattgaggaaaagaacattaactcatcagatggtggtgcattggaaaaaaaggatgcttcaagatcacacaggaaaaatggttttgcaagaccactcttgaaatgtgcagaagatgttatactaaatggtgatgtcgcaagtacttctgggaaagccattgcaagtttacaggtggaagcttctgatttggcaaacttcctcaccatggaccgaaatgggggttacagaggttctcaaactctcctaagatctgtactgtcagagaagcaggagctatgcttctctgttgtctcattgctctggcagaagctcattgcatctcccgaaatgcagatgtctgcagaaagtacatcagctcatcagggttggagaaaggttgtggatgcgctttgtgacattgtttcagcctcaccgaccaaggcttcagctgctatcgttctgcaggccgagaaggacttgcagccctggattgctcgagatgatgagcaaggtcagaagatgtggagagtcaaccagcgaatagttaagctgatagcagagcttatgaggaaccacgatagcccagaagcattggtgatccttgctagtgcttcagatcttcttcttcgagcaactgatggaatgcttgttgatggtgaagcttgtactttaccacaattagagctattggaagtaaccgccagagcagtccatctcatcgtcgaatggggagattcaggtgtatccgtcgctgatggcctctccaatctgctgaagtgccgtctatcaaccaccatccgctgtctttcgcaccccagcgcgcatgtccgtgcactcagcatgtccgtccttcgcgacatcttgaacagcggacaaataaactccagtaagctcatccaaggggaacaccggaatggcatccagagcccaacctaccagtgcttggcagcaagcatcatcaactggcaagccgatgtggagagatgcatagagtgggaagcccacagccgccgcgccaccgggctgacgctcgccttcctcaccgcggcggcgaaggagctcggctgcccactcacttgctga</cdnaseq> |
| Protein Sequence |
<aaseq>MSASNEKWIDGLQFSSLFWPPPQDSQQKQAQILAYVEYFGQFTA DSEQFPEDIAQLIQSCYPSKEKRLVDEVLATFVLHHPEHGHAVVHPILSRIIDGTLSY DRNGFPFMSFISLFSHTSEKEYSEQWALACGEILRVLTHYNRPIFKVDHQHSEAECSS TSDQASSCESMEKRANGSPRNEPDRKPLRPLSPWITDILLAAPLGIRSDYFRWCGGVM GKYAAGGELKPPTTAYSRGSGKHPQLMPSTPRWAVANGAGVILSVCDEEVARYETANL TAAAVPALLLPPPTTPLDEHLVAGLPPLEPYARLFHRYYAIATPSATQRLLFGLLEAP PSWAPDALDAAVQLVELLRAAEDYDSGMRLPKNWMHLHFLRAIGTAMSMRAGIAADTS AALLFRILSQPTLLFPPLRHAEGVELHHEPLGGYVSSYKRQLEVPASEATIDATAQGI ASMLCAHGPDVEWRICTIWEAAYGLLPLSSSAVDLPEIVVAAPLQPPTLSWSLYLPLL KVFEYLPRGSPSEACLMRIFVATVEAILRRTFPSETSEQSRKPRSQSKNLAVAELRTM IHSLFVESCASMDLASRLLFVVLTVCVSHQALPGGSKRPTGSDNHSSEEVTNDSRLTN GRNRCKKRQGPVATFDSYVLAAVCALSCELQLFPFISKNGNHSNLKDSIKIVIPGKTT GISNELHNSISSAILHTRRILGILEALFSLKPSSVGTSWSYSSNEIVAAAMVAAHVSE LFRRSRPCLNALSALKQCKWDAEISTRASSLYHLIDLHGKTVTSIVNKAEPLEAHLTL TPVKKDEPPIEEKNINSSDGGALEKKDASRSHRKNGFARPLLKCAEDVILNGDVASTS GKAIASLQVEASDLANFLTMDRNGGYRGSQTLLRSVLSEKQELCFSVVSLLWQKLIAS PEMQMSAESTSAHQGWRKVVDALCDIVSASPTKASAAIVLQAEKDLQPWIARDDEQGQ KMWRVNQRIVKLIAELMRNHDSPEALVILASASDLLLRATDGMLVDGEACTLPQLELL EVTARAVHLIVEWGDSGVSVADGLSNLLKCRLSTTIRCLSHPSAHVRALSMSVLRDIL NSGQINSSKLIQGEHRNGIQSPTYQCLAASIINWQADVERCIEWEAHSRRATGLTLAF LTAAAKELGCPLTC</aaseq> |
| Gene Sequence |
<dnaseqindica>8415..8720#8230..8322#7894..8112#7625..7693#6024..7520#5016..5225#4732..4882#4414..4654#3489..3547#2792..3066#2490..2632#2357..2411#2187..2264#2008..2094#ccgagccgtttctctccctctctctctcctcctccttcccctgcgcctcctccaccgcccgtgtcgccgccgcgcgcgtctatcccctcgccgccgccgccgtctacgccgcgtgaggtccggattggttgaaaggctgatcgaggtaatgcttttttatttttcccgtgcggttttagtttttctgtgctgtgcttggtggttttttctttaaaactatttttaggctggttttgatgatggcctttctaaggttgtcgtgtatggggggcgaggtggttcgggtggatttgtggtgttatgttgaggggatttttgtttggggggagagagttttggtggtagatgcggttgggattttgaagacgtgaaagggaaattagttttgaaatttgacggcgaggttgagctgattagtattgtaataattcgtggcatcggatagatcaacgcgagatggatgcttattactgcgaatttcaggaggtttttgtggtttttttaggcgagtagcgttgattctagctggattttgctgcttcgtggaggcgtttagatgtggtgcatacggctgtggatgtaatttgtgcggggataattactgaaaattaattcgcagtaagctagctctgctttaatattttttcccctgaaacagtaacaagggatcccttcctcatttcgttaacagtggaagtgaatacagacaccaaccgatgagcagagacacctgtaattaaacaccaaaagaagaacctgttttgttcctatatattttccatttctatgctttaggtaatatactttctggttcggtgtcatagtacccgaaatagaatctttgcttgccaaaaaaagaaagaataacaagatagaacaacatcattaaattctgtcttagacaatacatttataatcgaccaacaaaaacagaccgatgagtgacgtggaataacaaatgaagtataaatgtcacgaaaaacacatctattgattttgtgtgataagccataggagcctacgaggaaccaagtgaatggttctgtacaccacatccattagcattaccataaatttgcctatttctatgatgccttccttaacatatttatcgacatgtgagcttgcaccataactaaatgttatggtaaactttaccttataaatgattgcaacatgtaccttttcatttcgataattaaaaacgagaaagcttccacctttttcctagatatattttttcgtttgattatgaatttagttgtacttgacaataaaataatgcgcttgtaagattatgcaattttcgttgcattacctccctctcttttcatttgtcagtttttttctactccctccgtttcatattttaagtcgtttgacttttttcctagtcagactttgttaagtttgacaaagtttatagtaaaatttagcaatatctaaaatattaaattggtttcatcaaatctaacattgaatatattttgataatatgttttttttgtgttgaaaatacttctatatttttctataaacttagtcaaacttggaagaaatttcagtaagaaaaaagtcaaacggcttataatatgaaacggagggagtaaatttttttttgcattaattaaaattcatgtattttcctccttttttggtttttgttgtgcgatatattacagtgtagagactctgaagctcatatggttggcattggttgatatgataacgtgtcacgttgtgagatgcagacccccgttatgggggttgattgaatgaagtggatagcactcttataactttcttgctcgaagtttcttgataccaaggcaagtagcttataagaagatttggactttggtggcataaatggatgaactaactggcggcttcaacgtggtgttgattacaggtgcttttattgctaactggagcagtttgtgtagtttctttctttctctttgagaattctctcagtttcttgggcaggctcttgagctaccaagtatgtcagcttcaaatgagaagtggattgatgggctccagttctcatcactgttctggcccccaccacaggattcacaacaaaaacaggtaacattattcctatttgattcttgttagaaattctatatgttgaacatacttgcctcaatgggaaacttggttgcgtctcctctctgaaggcacaaattctggcctatgttgagtactttggccagtttacagctgacagtgagcaattccctgaagatatagctcaggtactgtatctctaagcatgtttagtatcttctgtgataaaatctttctccagtgtgttaacttttgcattctttttcttgcatgcttgcagctaattcaaagttgctatccatcaaaagaaaagcgccttgtagatgaagtattaggtaatttgatccagtgatcaatacatgttccacaaacaattgaagaaagagtttgacatatttttctcatatttccagcaacttttgttcttcatcatcctgagcatggccatgcagttgtgcatccgattctgtcacgcatcatagatgggacactcagttatgatagaaatggtttcccgttcatgtccttcatctctttatttagccatacttctgaggtaaggcccctactctaatggttagttccaatttattggttcatttctctgtgtttgataagattttgcctctgctgtgcatttcaatattatatctaaactgtgctgcttatagcttatcaaactactcttgctcataaagatgcaacttttatgcagaaagagtactcggagcagtgggccttggcctgtggagaaattcttagagttctaactcactacaacaggccaatcttcaaagttgatcaccaacatagtgaagcggaatgtagcagcacatctgatcaggcctcatcatgtgagtctatggagaaaagggctaacggttctccaagaaatgaacctgaccggaagccattgaggccactatctccttggatcacagacatattgcttgctgcacctctgggtattagaagtgactattttagatggtgagtcataataaatgataacatattattgttctgtggactgaaaatctgaaatcctcctttcttgagaaatacaacctcaattttatggtgatattgacaagaaggaagagcgcatataatttaaagttaaaacacggaaaataatagaagtatgtgagcagaacgcaggagcaaggggtggaactcataacaagttcaaacttcatgcatgttcataattccccaatgcaagtatggcaagaaaaatagacaacttttaaaagtatgctaatggaactgcatgcattgtgtaaacttgcttttgtcaagcatgttggaacatactatatatttgctgctgatgatgaaaaatttgcttgagtactcttctattgctaatggacgcttaccattccctgttttgtcttcaaatgcatcaggtgtggtggagtcatgggaaaatacgcagctggtggagaattgaagcctccaacaactggttggtaaaatcagcaatggaattttctatcgtgaattttttataattattgtaacattaattactcccatgtctttttattctgttgagataccatgtgacaatgtctacaattgcatattttgcattctttggtagatcagttcccttcttaagatccccaaagggaaactggagtatcaataacttactccctcaaataaaaaaaaagtgatactttaggcataaacacattcttcaaaacaaaactttgaatagcagtttcttttgtaatatattaataaagcatggaaaaattataatgtgaagaatgtacattcagggacaaatatactcatcatttttgcatggttgatcttaatgtccatagagagattgatcagaccaaaagtttatttttgacaggagtgagtatggattataataggagtgaatggcaatatgctgtgaaagtgagcattttatatttgtttactactagcatttggtgacaaagcaaatgatgtatattgtaaatcaaagtaaacaagtagaacatgtcctgtggcgacaagacataacctacaaattaaagttagcctgattgtttattttactgggagcacattttttctagattctagagtacatattattaaaaaaggtgtgatatgtttgcaaattactttttaatggaagtttgtaaattactttgaaacttgcattcagtttttttgcttcttaaaaaacatagtgcatatgggctttatgagctcatactatgcatgtttttctgcattggagtgggacctttatctttttcttgcaactcggatgctaatgcttattataaacacaagttactaacatgtgcttgggtcattcagcttacagccgaggatctgggaagcacccacaacttatgccatccacgcccagatgggctgttgccaatggagctggagttatactaagtgtctgtgatgaggaagtagctcgttatgagacagcaaatttgactgcggcagctgttcctgcacttctattacctccaccgaccacaccattggacgaacatttggttgcggggctccctcctcttgaaccatatgctcgcttgtttcataggtaagctcttatgatcctgtccactgttgtaccatgtgtactttccaaatgattgctaacatgctatttttcgtcagatactatgcaattgctactccaagtgctacccaaaggttgctttttggtcttctcgaggcaccaccatcatgggccccagatgcacttgatgcagcagtac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