Difference between revisions of "Os09g0250700"
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==Annotated Information== | ==Annotated Information== | ||
| + | OsABC1-12 encodes a protein with 716 amino acids, and this gene locates in chromosome 9 with 18 extrons. | ||
===Function=== | ===Function=== | ||
| − | + | Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain <ref name="ref1" />. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in ''yeast'', ''Escherichia col'', and human <ref name="ref2" /><ref name="ref3" />. | |
| + | There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in ''Arabidopsis''. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family <ref name="ref4" />. | ||
| + | [[File:abc1-table.jpg|middle|thumb|530px|'''Table.1'' Basic information of the rice ABC1 genes.(from reference) <ref name="ref4" />.]] | ||
| + | ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively <ref name="ref4" />. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins. | ||
| + | The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts <ref name="ref4" />. | ||
| + | Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling<ref name="ref4" />. | ||
===Expression=== | ===Expression=== | ||
Revision as of 05:07, 26 June 2014
Please input one-sentence summary here.
Contents
Annotated Information
OsABC1-12 encodes a protein with 716 amino acids, and this gene locates in chromosome 9 with 18 extrons.
Function
Members of the activity of bc1 complex (ABC1) family are widely existed in prokaryotes and eukaryotes as protein kinases. These protein kinase members were initially isolated from Saccharomyces cerevisiae and were responsible to suppress a defect in mRNA translation of cytochrome b and maintain the activity of the bc1 complex in the mitochondrial respiratory chain [1]. Mitochondrial and chloroplast ABC1 proteins is associated in respiratory electron transport system and as a lipid-soluble antioxidant in yeast, Escherichia col, and human [2][3]. There are 15 non-redundant ABC1genes distributed on all rice chromosomes randomly except chromosomes 3, 8, 10, and 12 in rice, and were named from OsABC1-1 to OsABC1-15 according to their chromosomal location (table 1). However, there are 17 members of ABC1 family in Arabidopsis. All of these genes contain introns and the number of intron varies greatly, and intron gain was an important event accompanying the recent evolution of the rice ABC1 family [4].
ABC1 domain is an important part of the ABC1 proteins, and aligned results show that the domains of all proteins were from 102–126 amino acids, except the OsABC1-14 and OsABC1-15 proteins. The length of the domain in OsABC1-14 and OsABC1-15 is 92 amino acids and 184 amino acids, respectively [4]. The XaXasX2QV segment that functions as a nucleotide-binding motif for protein kinases is highly conserved in ABC1 domain as well as lysine residue in N-terminal that as a binding site for chemical groups. In addition, other conserved amino acid valine and aspartate acid in the middle of the domain and glutamate acid in the C-terminal. It is also suggested that there are 10 putative motifs in rice ABC1 proteins. The real-time PCR results show that 14 genes express mainly in leaves. The subcellular localization is predicted that OsABC1-1 and OsABC1-8 were localized in the cytoplasm, OsABC1-3 and OsABC1-6 in the plasma membrane, OsABC1-10 in mitochondria, OsABC1-14 in vacuoles and the others in chloroplasts [4]. Members of this family participate in the extensive abiotic stress response and may play roles in the tolerance of plants to adverse environments. Furthermore, some of the rice ABC1 genes may be involved in the oxidative stress response and ABA signaling[4].
Expression
Please input expression information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this gene
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References
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Structured Information
| Gene Name |
Os09g0250700 |
|---|---|
| Description |
ABC-1 domain containing protein |
| Version |
NM_001069214.1 GI:115478167 GeneID:4346513 |
| Length |
7504 bp |
| Definition |
Oryza sativa Japonica Group Os09g0250700, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 9:4421172..4428675 |
| Sequence Coding Region |
4421710..4422312,4422502..4422645,4422927..4423052,4423609..4423696,4423905..4423998 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008402:4421172..4428675 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008402:4421172..4428675 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggcgatgatgatggctgatctcagcttctcatcatctatctccaatgtgaagctccaaaggttcagggcatcatcgaatgagacatctttgattaagagatctccggtgttccgtgcagaagctcggtcaactgaaactgagaaattccgtaccaatggccgcgcgataaagatggtcccgacaacagagttgaaaaggagcaagagtggtgtccgagtaaggccagacacagttaatggctctccaagtggtgctgtcaatggctcaaccaaggtggccatcaatggttctcctaatgctgctgtcaatggttcgatgaaagcggtaactaatggttctgttaatgggactagtttggttaaaggtagcaatatgtctgctctagtgaagacccaaaagcgaatgagacccaatgatgatccctttgaagaggagctgaaggttttgccctctgatgaaggattcagttgggcaaaagataattacaactcgtggcagaggagtgcagatatctggtcttttgttctttcttttcgaatccgcgttctattcgacaatgccaaatgggcctacgcaggtggattctcggaggaaaaacagaaagttcggaggaggaaaactgcttcatggttaagagaacaagtattgcagcttggcccaacttttattaagcttggacagttatcttcgacaagatctgatctgtttccaagggaatttgtggatgaacttgcaaaattgcaggatagagtacccgcattttctcctgagaaggcaaaggctttcatagagaaagaaatgggttgcccaattgaagttgtgtacaaggaatttgacaatcgtccgatagctgctgccagtcttggtcaggtacatcgtgcagtgcttcacaatggagagagagttgcagttaaagtgcagcgaccagggctcagaaaactttttgacattgacctaaggaatctaaaactagtagctgagtattttcagagcagtgaggcatttggtggtccttcaagggattggattggtatttatgaggaatgttccaaaattttgtatgaagaaattgattacatcaatgaaggaaagaatgctgacagatttcgccgagatttcagaaatataaagtgggtccgtgtgccacttatcatgtgggactacacaactgaaaaggtgttaaccctcgagtatgttcctggtattaagataaacaacttgactttgttggataatcggggatatagtcgttccctgattgcatctcgttcaatagaatcttatcttattcagatactgaagaccggtttcttccatgctgatccgcatcctggaaaccttgctatagacacggatggctctcttatatattatgattttggaatgatgggtgaaataaaatcattcactcgggagagattactttccttgttttatgctgtgtacgagaaggatgcaaataaggttatgaaagctctaattgacctagaagccctccaggcaacaggagacctttcaccggttagaagatccatacaatttttcttggacaatctgctgagtcagacgccagaccaacagcaaactttggctgcgattggagaggacttgtttgcaatatcacaggatcaaccttttcgtttcccatccacatttacatttgtcataagggcattctcaactcttgaagggattggatatatattggatccagatttttcctttgtgaaagttgccgcaccttatgcacaggaacttctagacttgaaacagagacgaacaagtgcacctgaactagtccgggagataagaaagcaagcaaacagtgctcgtgactctaccatctcaatgccctacagaatacagcgaattgaggattttgttgggcaacttgagtccggtgatctgaaacttagagtcagagtacttgagtctgaaagagctgctcgtaaggcgaatgtacttcaaatggcgaccatgtatacagccattggtggcacgctgttgaacgttggggtcacattgagtagccaagggaaccaaatagtggcaaacgggtcttttgttggcgcaggcatattcttggcattgctcataagatctatgcagagagtgaagaaactcgacaaattcgagacaatgatataa</cdnaseq> |
| Protein Sequence |
<aaseq>MAMMMADLSFSSSISNVKLQRFRASSNETSLIKRSPVFRAEARS TETEKFRTNGRAIKMVPTTELKRSKSGVRVRPDTVNGSPSGAVNGSTKVAINGSPNAA VNGSMKAVTNGSVNGTSLVKGSNMSALVKTQKRMRPNDDPFEEELKVLPSDEGFSWAK DNYNSWQRSADIWSFVLSFRIRVLFDNAKWAYAGGFSEEKQKVRRRKTASWLREQVLQ LGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKAKAFIEKEMGCPIEVVY KEFDNRPIAAASLGQVHRAVLHNGERVAVKVQRPGLRKLFDIDLRNLKLVAEYFQSSE AFGGPSRDWIGIYEECSKILYEEIDYINEGKNADRFRRDFRNIKWVRVPLIMWDYTTE KVLTLEYVPGIKINNLTLLDNRGYSRSLIASRSIESYLIQILKTGFFHADPHPGNLAI DTDGSLIYYDFGMMGEIKSFTRERLLSLFYAVYEKDANKVMKALIDLEALQATGDLSP VRRSIQFFLDNLLSQTPDQQQTLAAIGEDLFAISQDQPFRFPSTFTFVIRAFSTLEGI GYILDPDFSFVKVAAPYAQELLDLKQRRTSAPELVREIRKQANSARDSTISMPYRIQR IEDFVGQLESGDLKLRVRVLESERAARKANVLQMATMYTAIGGTLLNVGVTLSSQGNQ IVANGSFVGAGIFLALLIRSMQRVKKLDKFETMI</aaseq> |
| Gene Sequence |
<dnaseqindica>539..1141#1331..1474#1756..1881#2438..2525#2734..2827#3399..3492#3862..3916#4404..4495#4625..4795#4946..5002#5092..5175#5260..5344#5675..5736#5988..6062#6181..6285#6653..6794#7041..7114#agtgaaggattagttgctgatgtatgcattgtttcttgggttttgtttctgggtcgatggaatggaatatagcaagaatgggctaatttggtggctgcttgctcctagttgttatgtcgatctgtgtttatagatgaattgacaagcagtttggagaaaaaaaatattcacattttgacagttaatttgtagttcgatcaggaattaatttttgatatttgctccttaatctgttggagtatgagcacttctcatgaatctctttggctaatccattccgaacaagatattagatgattttctaagaacgtctgctgaatatctgtatagcaattatgcaaccatgtggtgcctatgtaatccagtccttaatttcttggaaatggaaattgaattttatagtttaggacatttacacaattatctcaaggctttagtttcatttggtaggctggcatttcattgcaattacatttctttttgttctgctgtggatactgatgaggaaatgtttacgaacaggagcttttgattagccatggcgatgatgatggctgatctcagcttctcatcatctatctccaatgtgaagctccaaaggttcagggcatcatcgaatgagacatctttgattaagagatctccggtgttccgtgcagaagctcggtcaactgaaactgagaaattccgtaccaatggccgcgcgataaagatggtcccgacaacagagttgaaaaggagcaagagtggtgtccgagtaaggccagacacagttaatggctctccaagtggtgctgtcaatggctcaaccaaggtggccatcaatggttctcctaatgctgctgtcaatggttcgatgaaagcggtaactaatggttctgttaatgggactagtttggttaaaggtagcaatatgtctgctctagtgaagacccaaaagcgaatgagacccaatgatgatccctttgaagaggagctgaaggttttgccctctgatgaaggattcagttgggcaaaagataattacaactcgtggcagaggagtgcagatatctggtcttttgttctttcttttcgaatccgcgttctattcgacaatgccaaatgggcctacgcaggtggattctcggaggaaaaacaggtatgcttttatggtacaaataagctttagttaaagaattctgcattccctttaaagtttcctatgcgaaagctttaccttttttgtggagtaactggtaattataatggatcacagagatttgggttgctaaaatgaaaagatatttattttttgtatgcgtggactaaatcatcccatatatcacagaaagttcggaggaggaaaactgcttcatggttaagagaacaagtattgcagcttggcccaacttttattaagcttggacagttatcttcgacaagatctgatctgtttccaagggaatttgtggatgaacttgcaaaattgcaggtatttattttttgtgattccatatcaaattcttaatttatttgctaactctactgtgtttgtgttaacctccaactgctctagtattttctgtattcctcttgttgattttttagctctacagtaaactgattgtaatttcataataatgaatgaaaggacacaattattattgtaatgatgaccgacaagagaattatctatagtagtaaaccaaaatcaaaacagttcattagaacttagaaaagtatatatattgtaacttccggttttttgtgcaggatagagtacccgcattttctcctgagaaggcaaaggctttcatagagaaagaaatgggttgcccaattgaagttgtgtacaaggaatttgacaatcgtccgatagctgctgccagtcttggtcaggtgcttagttttgcactctatcaaaacataaatctgatcttctcagtaccaatcagtgtatatcatactatatcacctttttctcaaggattttttctatacattttacttgttcaattcctctatatcatacattttctatacattttttctatatcttactatatcacctttttctcaaggattttttctatacattttacttgttcaattcctctatgaaagccaacagctgctgctagtcctctgcatgtttttgtttcaagttgtaaaattacacttcactatatgcttttcatatcgtattggccaatattttcttcactacatgtttctcatatctgtatatgtcaataaatgcctaccatttctgctcattctcacctgattcaggttgtcctttcctgttatactactggtccatgtttgttttttgaggggaaacagcgatacttattaataagctacaaaatttggtgtccttgacaatcttcatcctatcttctttatttataaataaaatctgcttacaggttccttcatatatattgttcaggtacatcgtgcagtgcttcacaatggagagagagttgcagttaaagtgcagcgaccagggctcagaaaactttttgacattgacctaagtaagagaaattattaccttttgacattctacccttttgcgtttgtttattatccttttactctttactatttttttctcaaaatatgataataacgtaatttaaaatgcttgtttttcaagaaaaaaattagatggctttaatatgaaataactcagttgttgtttaatgttgataatagttttgattattctttggaatcttgtagggaatctaaaactagtagctgagtattttcagagcagtgaggcatttggtggtccttcaagggattggattggtatttatgaggaatgttccaagtaagtagcaatatagtcttcttggatcattgaatgtattctattgacttgatatttttattatttgacatctctagaatacatcccaaccttttctgccaaaaactttgttggaattgtgtggaataactagttccctaccatagcacctgatattgcaacctctatcgttcttcaaataaaaacagtagtacagtactacctcagtcccgaaatataaaggattttggcaatgcacctggataagtgtttgtcaaggtacgttatcagaacaccttatatttcgacggaggtagtattgcttatgctgttcaccatgtgagtccattattaaatcaataaatgaacctgtcctttggaggggaacaaagaccttgaatacgtcatagattgaggtataaggactaatggatggaagatatttggttagaaactttttgcaatatctgtagggctatgccaatttttgtttatttacagatttctgaaattattgtagcttccacagtccatatatttcttcagaaagtgagttgacataagaattgaccatcatgatttgtgatttcagaattttgtatgaagaaattgattacatcaatgaaggaaagaatgctgacagatttcgccgagatttcagaaatataaagtgggtccgtgtgccagtacgtttcttcaaactcaaaacacaacttgtttttgggttttgtttccatgcttgacttcgcttatatcttttaagaggccatatattaatctgcctagtcctgtttcaaacccatatttgtaatcaatctgattgtgtcgacattcttccaccaccatggcatcctcctataatcacctccttgatctcattgacatctgcatgaaaaccatggttagttgttaaaaaacatgcagcaatgtctttttttccccgtttattactgtagtgccatgtctcttgtcaacattgaaggcatcatttgggtgtgtgtggtgtgtctttttcctgaagttttacatgaataatcgttatgttatttttctagcttatcatgtgggactacacaactgaaaaggtgttaaccctcgagtatgttcctggtatgtgctagttatttcttgtaacagaaattagtatgtatagtgttgaattggactgactattgttctttggatagtttgtacataacaattatctcaatttcatttgttaattgctaatatatgaaaataaaattatgacagcattcaaaattagattatttattttaatgtgttcttatacttcctccatttcatggttgtcaaatccatattatcagtttcttgttattcaaatctgacaataaaatttctgtgcttcattaatctgattattttcatactcaagtattgctactacacatatttttccttctaaaatatacaattaagatctgacagtgattgtgagaggatggttgtcctttcaatcaaaacttggtagaatatgtttttttattaagagaatgcttttatttgtagaacctgctcttaccgcaactttatcttaactatttggctttactcaatctcttaatttttacaggtattaagataaacaacttgactttgttggataatcggggatatagtcgttccctgattgcatctcgttcaatagaatcttatcttattcaggtagatatatttcaagaatttgacttccgatggtttgtatattttttaatgctcaatgtctattagagacgagttgaatatcatttaatgtggtggttttcctctaaagttcttcattgtaccacacagatactgaagaccggtttcttccatgctgatccgcatcctggaaaccttgctatagacacggatggctctcttatatattatgattttggaatgatgggtgaaataaaatcattcactcgggagagattactttccttgttttatgctgtgtacgagaaggatgcaaataaggtatctcaatattttcatacgaacagctcatatacagcaacatttctctctattttttatgattttacctagcatgctattgcaagttaagttgcccaaatcactaggcacttcatctttctctcagtctcattcagctctatcttgcaggttatgaaagctctaattgacctagaagccctccaggcaacaggagacctttcaccggtttgtagaacattgtagttatcagatgggaattcctggaataattgcatttaaaatatgccctttcccccttttctttggttatttaggttagaagatccatacaatttttcttggacaatctgctgagtcagacgccagaccaacagcaaactttggctgcgattggagaggttgtctggccttacaattttcttaggattagctttataaactgggatattttagttaatatattatttttcttccctttgcaggacttgtttgcaatatcacaggatcaaccttttcgtttcccatccacatttacatttgtcataagggcattctcaactcttgaaggttctctttttctttatatatctatattccggagataattatcattatctgcatttctcttcttactattttttttgtcataaatcaatatcaaaggcaaatgtgtatctacctaatgctacaaaatatgtaaggttcactgatggaaaactaggctgttaataagatttgatgtctgttcaaacaatctgctaattgatcggcttttctaacttccctctgattgtgacatctctgttagtgtacaatattattatgtatgtgattgaccacggaaaagtttacatatttataggttaatgaccttgttgttataattatatttgatagggattggatatatattggatccagatttttcctttgtgaaagttgccgcaccttatgcacaggttagaattattgtccatccttttattgtccctatatctgtattgtgtatttgggaagtgcattgatacaactattttagaaaagttagtgtatgtcaaaataaagtaactaataattcgaatcatacacgcttctttgttatttttgctgagacaattttctttctttcctttatcttagcagcgtagtcactatcttcagactttgcctgtgcatgcaatgctaatgaataatttattttgaacttcaggaacttctagacttgaaacagagacgaacaagtgcacctgaactagtccgggagataagaaagcaagcaaacagtgtaaggacacaaatatttttctagtattccagtagatgtgcattttttcccttttgatctgcatattgtgacaatggcacatcatactgatcaatgttctgctgggtgtacatgacaggctcgtgactctaccatctcaatgccctacagaatacagcgaattgaggattttgttgggcaacttgagtccggtgatctgaaacttagagtcagagtacttgaggtaagattattctggtaacaagttcttttactatctagcatcttgttaaggttgttggagattgataggaataaaaaaaacaatctgctttacacatttttgcattatgttaatgaatgattttaagcactaaaccgtctgtcatacataaatattcaatacttttaattaaaagaatatgcaagtattattcttgatggacagagaataactacaaaattattctttttttaatcccataccgatatttaccaaaagctcatccattcgcttgtttagcatcactacctgcaattatcagaaaactagtgcttcttttttggctgtcctgaatctgaaaacatgctgaacttaatgccattttcagtctgaaagagctgctcgtaaggcgaatgtacttcaaatggcgaccatgtatacagccattggtggcacgctgttgaacgttggggtcacattgagtagccaagggaaccaaatagtggcaaacgggtcttttgttggcgcaggtggggttctcttttttgtttggtgaactttgtttcatacattctccatatcattgcggacgattcagtcttttgttagtctttgttacttcttatgtgatatattactagaacatcgaggttgatccttttgatccgaaaatgtccaacttgatcaagctacttcatgcaggctctaaggatgtgaaaaaaaaagtacatgttcttgattcggtctaattgctgttcccaactgaaaccatgcaggcatattcttggcattgctcataagatctatgcagagagtgaagaaactcgacaaattcgagacaatgatataattgtcaacttgtcatatcattccaattggctttgctggaagctcataatctgtaccagaagcatggcaagacaatactccctctatcccaaaaagtgtccaactctagggattaatatacacacaccccctgtccttgtctagattcatcactagagttgaactctttttgggatagagtgaataggtcacctctcttttattctgtaaaaaaattacatgggggagtttatccctttatagccatacatatatagtttggtaggagatgccattcttttttttagaaaaaaacaatggaatcaacttgttacagcctgtaaatctgtacaattgtatcatttttgagccgtaaggtctctctcagaaatgaaacgaaatctaggtattc</dnaseqindica> |
| External Link(s) |
- ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedref1 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedref2 - ↑ Cite error: Invalid
<ref>tag; no text was provided for refs namedref3 - ↑ 4.0 4.1 4.2 4.3 4.4 Cite error: Invalid
<ref>tag; no text was provided for refs namedref4
