Difference between revisions of "Os03g0308100"
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==Annotated Information== | ==Annotated Information== | ||
| + | OsClpP5 encodes a protein which share 92 % identity to the P5 subunit (AtClpP5) of the ATP-dependent caseinolytic protease from Arabidopsis<ref name="ref1" />. Containing nine exons, OsClpP5 locates in pale-yellow-leaf–variegated (pyl-v) allele in chromosome 3 A is commonly the transcription start site that upstream of 94-bp of the start codon in OsClpP5 in T-65. | ||
| + | Pyl gene is indispensable for the growth of the plant. The phenotypes are shown as Figure 2 <ref name="ref2" />. | ||
===Function=== | ===Function=== | ||
Please input function information here. | Please input function information here. | ||
Revision as of 13:11, 20 March 2015
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Contents
Annotated Information
OsClpP5 encodes a protein which share 92 % identity to the P5 subunit (AtClpP5) of the ATP-dependent caseinolytic protease from Arabidopsis[1]. Containing nine exons, OsClpP5 locates in pale-yellow-leaf–variegated (pyl-v) allele in chromosome 3 A is commonly the transcription start site that upstream of 94-bp of the start codon in OsClpP5 in T-65. Pyl gene is indispensable for the growth of the plant. The phenotypes are shown as Figure 2 [2].
Function
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Expression
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Evolution
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References
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Structured Information
| Gene Name |
Os03g0308100 |
|---|---|
| Description |
Peptidase S14, ClpP family protein |
| Version |
NM_001056437.2 GI:297600815 GeneID:4332615 |
| Length |
2967 bp |
| Definition |
Oryza sativa Japonica Group Os03g0308100, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 3:11017466..11020432 |
| Sequence Coding Region |
11017711..11017908,11018127..11018215,11018308..11018342,11018998..11019070,11019153..11019198 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008396:11017466..11020432 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008396:11017466..11020432 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggcgaccaccaccaccaccccctcctcctctctcaccgcccctctcctccgcccgagctcgaacgcgaaccccgccccgagatctctgccgctcctcaggagccggaggtgcgctcgggccgtggcgaccgccgccgccgccgctggccacggggccgctcatcagaggagcgggatttggtcgatcagggatgatttggtggtgccgaggtcgccctacttccctgtggagtatgcgtcggggcaggaacgcgggccatcgcccatggtgatggagcggttccagagcgtcgtcagccagctcttccagcacaggattatccggtgtggtggacccgtggaggatgatatggcgaacatcatcgttgcccagctgctatatctcgatgccatcgatcctaacaaggatatcattatgtatgtgaattctcctggaggatcagtgacagctgggatggccatattcgacacgatgaagcatatcagacctgatgtttccacagtttgtattggacttgctgcaagtatgggagcttttctgcttagtgctgggacaaaagggaagcgatacagcttacctaactcaagaataatgatccatcaacctctcggaggagcccaaggacaagagactgatcttgagatccaggctaatgagatgctgcatcacaaggctaacctgaatggatacctagcataccacactgggcagcccctagataagatcaacgtagatactgaccgtgattacttcatgagcgcgaaggaggcaaaggagtatggtctaattgatggagttatcatgaatccccttaaagcccttcaaccgcttcctgcttctagttag</cdnaseq> |
| Protein Sequence |
<aaseq>MATTTTTPSSSLTAPLLRPSSNANPAPRSLPLLRSRRCARAVAT AAAAAGHGAAHQRSGIWSIRDDLVVPRSPYFPVEYASGQERGPSPMVMERFQSVVSQL FQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPNKDIIMYVNSPGGSVTAGMAIFDTMK HIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQA NEMLHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAKEAKEYGLIDGVIMNPLKALQ PLPASS</aaseq> |
| Gene Sequence |
<dnaseqindica>2525..2722#2218..2306#2091..2125#1363..1435#1235..1280#693..785#488..611#279..368#95..195#acacactattctctcttcttcttaccaccctctcccggataagaggcgcaaccaaagcccccaccctcgcccaaaacccccacgagccgcggccatggcgaccaccaccaccaccccctcctcctctctcaccgcccctctcctccgcccgagctcgaacgcgaaccccgccccgagatctctgccgctcctcaggttcactcccctcttccccctccctcctcactctactctgtcgtggctccactcgctctaccctaactgactcggtcttgcaggagccggaggtgcgctcgggccgtggcgaccgccgccgccgccgctggccacggggccgctcatcagaggagcgggatttggtcgatcaggtgggggggggggttgattttgtgacgaaccatttgtagctctgcatcgtctggttgggggagggttgggtggggatgcgagggagctgatgatgctgtggttgttgtgtgtttcgtagggatgatttggtggtgccgaggtcgccctacttccctgtggagtatgcgtcggggcaggaacgcgggccatcgcccatggtgatggagcggttccagagcgtcgtcagccagctcttccagcacgtacgggagcactagattgttgcacaagtttatttgtggagggttctgtgtgctgtctgactctgtgtgattgtggaacagaggattatccggtgtggtggacccgtggaggatgatatggcgaacatcatcgttgcccagctgctatatctcgatgccatcgatcctaacaaggtgaaaatgatgaataagacgctatccgacatccaattcctatttcctataccaatagctgccaaagctttgttacgaactgcttactctaaaaatactgaggcgatgaagggagtggtgctcactgtatttacaattttacatgaactatatggtgtcttgttttaatggatgattgttgttaatccccagataaaatggtccttttatctgtcaatactcaataccagacactaaagtaccattgctactcactttgggttatatatgagtccttgttagtcctagcttaggctgtgattcagttatgtagttgtgacctcaaaccttatggtgaggcttgtattgcgatttcatctaccaggacctgattccatggcaccatatattcatgatttcgtacttacattcagtactcgattcttgacttcctctcaacattcctgtaggatatcattatgtatgtgaattctcctggaggatcagtgacagctggtaataactcatccattttttttcatagctccatctcactcttggaacatttgtttcacaccaaactgcattttgtgtttagggatggccatattcgacacgatgaagcatatcagacctgatgtttccacagtttgtattggacttgctgcaaggtatttagtactgaaaaactgatatccttaattggcaattgatttggatttgtgacgctctgcaatttatgcatcttataatgtttaattctttagcattctgttcaattattcaagtaagggtttcagttgctatattctggtcaacatgtaaacatgcacctgtttccagttgtatatcccgcctaattccttctcctttcataatgtgggaagcacaccaaatcattgattgtatcaggcatgttctattcagtataatcagcctcaatctaggattttgggttgactgagatcaaattttgtgctgcgcatgttagcaaagaagctttgtaccctcatacctccttaatcaaaatataatttttcaaactttatgtttgtgagaatccatatggatgttgataacaggagagtttcttcatttcatgtactttatcaatgtttagccaacaatgcaaattcaggagtgcttatcagtattccaggcacacagtttattagtaaaacatgataactgttcagctgcaaatctgtaaccatttctttctcattgtacttttggaatgctctcttttagctatccatcttgccttaagttgcattgatttcggttatgcactcattttcactgttttgtttccctttttggcagtatgggagcttttctgcttagtgctgggacaaaaggtaattgagtgattgttaatgcaagtactacatttattctacaactagactgatctgaatccttgaatactgtacttgtgaatgtaacacagggaagcgatacagcttacctaactcaagaataatgatccatcaacctctcggaggagcccaaggacaagagactgatcttgagatccaggtaaatccacaaagttaaattgtgtttttatcaagatcaggacgacatctcaatagcaaataattaaccatatcattgtttctctcttgccggtatatggttcgatctacatgaaatacatttatttccacaagcgaatagcaactccgctggctttctattgttacttgtatcaccagaagatttttctgtcactgattttccattatttcttttaggctaatgagatgctgcatcacaaggctaacctgaatggatacctagcataccacactgggcagcccctagataagatcaacgtagatactgaccgtgattacttcatgagcgcgaaggaggcaaaggagtatggtctaattgatggagttatcatgaatccccttaaagcccttcaaccgcttcctgcttctagttagccatggagtgctcaatctccacggagcattttttggttatcttttagaactgttattgcatccactgtttttattagcttggcaagatagttttgcgattccacaagcaaccacatcctgaggcttcaaagtttgtacaatacagatgtactactaggaggatatcttctgcgatgaatattgcaacttatttgatgtactattaggaggatatcttctgcgatgaatattgcaacttatttgat</dnaseqindica> |
| External Link(s) |
