Difference between revisions of "Os03g0308100"
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==References== | ==References== | ||
| − | + | <references> | |
| + | * <ref name="ref1"> | ||
| + | Adam, Z. and Clarke, A.K. (2002) Cutting edge of chloroplast proteolysis.Trends Plant Sci. 7, 451–456. | ||
| + | </ref> | ||
| + | |||
| + | * <ref name="ref2"> | ||
| + | Kazuo Tsugane, Masahiko Maekawa, Kyoko Takagi, et al. An active DNA transposon nDart causing leaf variegation and mutable dwarfism and its related elements in rice. The Plant Journal (2006) 45, 46–57. | ||
| + | </ref> | ||
| + | |||
| + | </references> | ||
==Structured Information== | ==Structured Information== | ||
Revision as of 13:20, 20 March 2015
Please input one-sentence summary here.
Contents
Annotated Information
OsClpP5 encodes a protein which share 92 % identity to the P5 subunit (AtClpP5) of the ATP-dependent caseinolytic protease from Arabidopsis[1]. Containing nine exons, OsClpP5 locates in pale-yellow-leaf–variegated (pyl-v) allele in chromosome 3 A is commonly the transcription start site that upstream of 94-bp of the start codon in OsClpP5 in T-65. Pyl gene is indispensable for the growth of the plant. The phenotypes are shown as Figure 2 [2].
Function
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Expression
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Evolution
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You can also add sub-section(s) at will.
Labs working on this gene
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References
- ↑ Adam, Z. and Clarke, A.K. (2002) Cutting edge of chloroplast proteolysis.Trends Plant Sci. 7, 451–456.
- ↑ Kazuo Tsugane, Masahiko Maekawa, Kyoko Takagi, et al. An active DNA transposon nDart causing leaf variegation and mutable dwarfism and its related elements in rice. The Plant Journal (2006) 45, 46–57.
Structured Information
| Gene Name |
Os03g0308100 |
|---|---|
| Description |
Peptidase S14, ClpP family protein |
| Version |
NM_001056437.2 GI:297600815 GeneID:4332615 |
| Length |
2967 bp |
| Definition |
Oryza sativa Japonica Group Os03g0308100, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 3:11017466..11020432 |
| Sequence Coding Region |
11017711..11017908,11018127..11018215,11018308..11018342,11018998..11019070,11019153..11019198 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008396:11017466..11020432 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008396:11017466..11020432 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggcgaccaccaccaccaccccctcctcctctctcaccgcccctctcctccgcccgagctcgaacgcgaaccccgccccgagatctctgccgctcctcaggagccggaggtgcgctcgggccgtggcgaccgccgccgccgccgctggccacggggccgctcatcagaggagcgggatttggtcgatcagggatgatttggtggtgccgaggtcgccctacttccctgtggagtatgcgtcggggcaggaacgcgggccatcgcccatggtgatggagcggttccagagcgtcgtcagccagctcttccagcacaggattatccggtgtggtggacccgtggaggatgatatggcgaacatcatcgttgcccagctgctatatctcgatgccatcgatcctaacaaggatatcattatgtatgtgaattctcctggaggatcagtgacagctgggatggccatattcgacacgatgaagcatatcagacctgatgtttccacagtttgtattggacttgctgcaagtatgggagcttttctgcttagtgctgggacaaaagggaagcgatacagcttacctaactcaagaataatgatccatcaacctctcggaggagcccaaggacaagagactgatcttgagatccaggctaatgagatgctgcatcacaaggctaacctgaatggatacctagcataccacactgggcagcccctagataagatcaacgtagatactgaccgtgattacttcatgagcgcgaaggaggcaaaggagtatggtctaattgatggagttatcatgaatccccttaaagcccttcaaccgcttcctgcttctagttag</cdnaseq> |
| Protein Sequence |
<aaseq>MATTTTTPSSSLTAPLLRPSSNANPAPRSLPLLRSRRCARAVAT AAAAAGHGAAHQRSGIWSIRDDLVVPRSPYFPVEYASGQERGPSPMVMERFQSVVSQL FQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPNKDIIMYVNSPGGSVTAGMAIFDTMK HIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQA NEMLHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAKEAKEYGLIDGVIMNPLKALQ PLPASS</aaseq> |
| Gene Sequence |
<dnaseqindica>2525..2722#2218..2306#2091..2125#1363..1435#1235..1280#693..785#488..611#279..368#95..195#acacactattctctcttcttcttaccaccctctcccggataagaggcgcaaccaaagcccccaccctcgcccaaaacccccacgagccgcggccatggcgaccaccaccaccaccccctcctcctctctcaccgcccctctcctccgcccgagctcgaacgcgaaccccgccccgagatctctgccgctcctcaggttcactcccctcttccccctccctcctcactctactctgtcgtggctccactcgctctaccctaactgactcggtcttgcaggagccggaggtgcgctcgggccgtggcgaccgccgccgccgccgctggccacggggccgctcatcagaggagcgggatttggtcgatcaggtgggggggggggttgattttgtgacgaaccatttgtagctctgcatcgtctggttgggggagggttgggtggggatgcgagggagctgatgatgctgtggttgttgtgtgtttcgtagggatgatttggtggtgccgaggtcgccctacttccctgtggagtatgcgtcggggcaggaacgcgggccatcgcccatggtgatggagcggttccagagcgtcgtcagccagctcttccagcacgtacgggagcactagattgttgcacaagtttatttgtggagggttctgtgtgctgtctgactctgtgtgattgtggaacagaggattatccggtgtggtggacccgtggaggatgatatggcgaacatcatcgttgcccagctgctatatctcgatgccatcgatcctaacaaggtgaaaatgatgaataagacgctatccgacatccaattcctatttcctataccaatagctgccaaagctttgttacgaactgcttactctaaaaatactgaggcgatgaagggagtggtgctcactgtatttacaattttacatgaactatatggtgtcttgttttaatggatgattgttgttaatccccagataaaatggtccttttatctgtcaatactcaataccagacactaaagtaccattgctactcactttgggttatatatgagtccttgttagtcctagcttaggctgtgattcagttatgtagttgtgacctcaaaccttatggtgaggcttgtattgcgatttcatctaccaggacctgattccatggcaccatatattcatgatttcgtacttacattcagtactcgattcttgacttcctctcaacattcctgtaggatatcattatgtatgtgaattctcctggaggatcagtgacagctggtaataactcatccattttttttcatagctccatctcactcttggaacatttgtttcacaccaaactgcattttgtgtttagggatggccatattcgacacgatgaagcatatcagacctgatgtttccacagtttgtattggacttgctgcaaggtatttagtactgaaaaactgatatccttaattggcaattgatttggatttgtgacgctctgcaatttatgcatcttataatgtttaattctttagcattctgttcaattattcaagtaagggtttcagttgctatattctggtcaacatgtaaacatgcacctgtttccagttgtatatcccgcctaattccttctcctttcataatgtgggaagcacaccaaatcattgattgtatcaggcatgttctattcagtataatcagcctcaatctaggattttgggttgactgagatcaaattttgtgctgcgcatgttagcaaagaagctttgtaccctcatacctccttaatcaaaatataatttttcaaactttatgtttgtgagaatccatatggatgttgataacaggagagtttcttcatttcatgtactttatcaatgtttagccaacaatgcaaattcaggagtgcttatcagtattccaggcacacagtttattagtaaaacatgataactgttcagctgcaaatctgtaaccatttctttctcattgtacttttggaatgctctcttttagctatccatcttgccttaagttgcattgatttcggttatgcactcattttcactgttttgtttccctttttggcagtatgggagcttttctgcttagtgctgggacaaaaggtaattgagtgattgttaatgcaagtactacatttattctacaactagactgatctgaatccttgaatactgtacttgtgaatgtaacacagggaagcgatacagcttacctaactcaagaataatgatccatcaacctctcggaggagcccaaggacaagagactgatcttgagatccaggtaaatccacaaagttaaattgtgtttttatcaagatcaggacgacatctcaatagcaaataattaaccatatcattgtttctctcttgccggtatatggttcgatctacatgaaatacatttatttccacaagcgaatagcaactccgctggctttctattgttacttgtatcaccagaagatttttctgtcactgattttccattatttcttttaggctaatgagatgctgcatcacaaggctaacctgaatggatacctagcataccacactgggcagcccctagataagatcaacgtagatactgaccgtgattacttcatgagcgcgaaggaggcaaaggagtatggtctaattgatggagttatcatgaatccccttaaagcccttcaaccgcttcctgcttctagttagccatggagtgctcaatctccacggagcattttttggttatcttttagaactgttattgcatccactgtttttattagcttggcaagatagttttgcgattccacaagcaaccacatcctgaggcttcaaagtttgtacaatacagatgtactactaggaggatatcttctgcgatgaatattgcaacttatttgatgtactattaggaggatatcttctgcgatgaatattgcaacttatttgat</dnaseqindica> |
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