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| Line 20: |
Line 20: |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]] |
| − | GeneName = Os03g0694900|
| |
| − | Description = Similar to Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (ValRS)|
| |
| − | Version = NM_001057508.1 GI:115454744 GeneID:4333799|
| |
| − | Length = 7519 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os03g0694900, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| − | | |
| − | ORGANISM Oryza sativa Japonica Group
| |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| |
| − | |
| |
| − | Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
| |
| − | AP = Chromosome 3:28587296..28594814|
| |
| − | CDS = 28587659..28587739,28587921..28587980,28588099..28588268,28588367..28588439,28588562..28588627<br>,28588728..28588811,28589147..28589224,28589475..28589558,28589910..28589989<br>,28590152..28590209,28590301..28590603,28590693..28590863,28591437..28591627<br>,28591750..28592152,28592712..28592963,28593043..28593543,28593647..28593744<br>,28593866..28593965,28594188..28594333,28594439..28594604|
| |
| − | GCID = <gbrowseImage1>
| |
| − | name=NC_008396:28587296..28594814
| |
| − | source=RiceChromosome03
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage1>|
| |
| − | GSID = <gbrowseImage2>
| |
| − | name=NC_008396:28587296..28594814
| |
| − | source=RiceChromosome03
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>|
| |
| − | CDNA = <cdnaseq>atgtccagcgttacccctgctgccgacgcgcagccactcgatgagaaagagctggagcggaagctgaagaaagatcagaaggcaaaagagaaagaggaaaaaaggcttaaggcgaaggcaaaggaggcggctaggctccaggcacaagcagcttcagatggacctaagaaaagcgagaagaagcaaaggaagaaagctgtggaggatgagaatcctgaggatttcattgatccagacactcctcatgggcagaagaaatttcttgcatctcaaatggccaagcagtatagcccaactgctgttgagaaatcatggtattcctggtgggaatcatcaggatattttggggcagatgctgcaagctcaaagccaccatttgttatagttttgccacctccaaatgtcactggagcgcttcatataggccatgcacttacggtggctatagaggattccatgatacgctggcggaggatgtcaggttataacactctgtgggttccaggagttgaccatgcaggaatcgctactcaggttgtagtggagaagaagcttatgcgtgaaaggaatttgacaaggcatgacatagggcgtgaagaatttgtatctgaagttctcaaatggaaagatgaatacgggggtaccatattgaatcaattgcgtaggcttggggcctcacttgattggtcccgcgagtgttttacaatggataaaccaagatcaaaggctgtaactgaagcttttgtcaggttgtacaaacaaggcctgatatatagggattatcgcctcgtgaattgggattgcacccttcgaacagcaatttctgacgtagaggttgattatctagagattaaagaggaaactatgttaaaggttcctggttataatacaactgtacaattcggtgtgttgatctcttttgcatatccacttgaggaaggattgggtgagattattgtcgcaacaacaagaatcgaaacaatgcttggggatacagccattgctgttcaccctgaggatggcagatacaagcatctgcatggtaggtatgcaatccatcccttcaatggccgaaagctcaaaataatctgtgatgctgagttagtggatcccactttcggtactggggctgtcaagattacacctgcccatgatccaaatgattttgaggttggaaagcgacacaaccttgagttcatcaatatcttcacagatgatggaaaaataaacaacaatggaggtgcacaatttgtaggaattccaagatttactgctcgagttgctgttattgaggcactgaaggcaaagggcttgtacaaggagacaaagaagaacgaaatgagtttgggtgtttgttcaagaactaatgatgtggtggagcctatgataaaaccccaatggtttgttaattgcaataccatggcacaagcaggtattgatgctgtaaggtccaaaagaattgagattattccacaacagtatgagcaagactggtatagatggcttgcaaatatacgtgattggtgtatttcgaggcagctttggtggggacatcgcgttcctgcttggtatgttatactagaagatgatcaagagaaaattctgggttctgctaatggccgttggattgttgctagaaacgaaagtgaagcaaacctggaggcacagcaaaagtatcctgggaagaaattcgagttacatcaagatcctgatgtgttggatacatggttttcatctggtctcttcccattaaccgtacttggttggccagatgatacagctgaccttaaagctttctaccctggttcggtgctagaaactggacatgacattatcttcttttgggtagcacggatggtgatgatggggatgcaacttggtggcgatgtgccatttgagaaggtttatttgcaccctatgatacgtgatgctcatggacgcaaaatgtccaagtcgcttggtaatgtcattgatcccgttgatgtgataaatggcatttcactggatggtctcctcaaacgtttgaaagaaggcaatctagatccaaatgaattgaacattgcaacagaagggaagaagaaggattttcctgatggcattgctgaatgtggtaccgatgctctccgttttgcactggtttcttacacttcgcagtctgacaagataaacctggatatcaaacgagttgttggatatcgacagtggtgcaataaattatggaatgccattcgttttgcaatgggcaagcttggcaatcattacactccccctgcaactatttctgtaactacaatgccacccatatgcaaatggatattgtcagtacttaataaagctattggcaaaactgtcacctcgttagaagcatacaaattttctgatgctacatctgctatatactcgtggtggcagtaccaactatgtgatgtgttcatagaagctataaagccttacttcttcaatgactctcaagagtttgaatcagcaagagctgcctctagagatgccttatgggtttgcttagacactggtttgcgcttgctccacccattcatgccttatgttacagaagagctctggcagcgtcttcctcagcctaaagattcttgtcggaaagattccattatggtatcagagtacccatctgttgttaaggaatggacggatgataaacttgaaaatgagatagatattgccttagatactatcaacaaactaagatctctgaagccaccatctgatacaaatgagagacgacctgcttttgcactttgccgaggccaagagattactgccaccattcagtgttatcagtctctagttgtgtctctttcttccacatcatctctaaagatcctgacagagaatgatgaaacgccacctgactgtgcaacagctgttgtaaacaaagatttgtctgtataccttcaactccaaggagctctcaatgcagaagttgagcttgaaaagctgaggaaaaagagagaagaaattcaaaagctccaacacgcactgtcacagaaaatggaagcttctggttacaaagagaaggctccacagaatgtccaggaggaggacatgagaaaactcactagtttttttgaacagctagagattatcagtgaagctgaaaagaagctagatgcaaaaactggcaataattga</cdnaseq>|
| |
| − | AA = <aaseq>MSSVTPAADAQPLDEKELERKLKKDQKAKEKEEKRLKAKAKEAA RLQAQAASDGPKKSEKKQRKKAVEDENPEDFIDPDTPHGQKKFLASQMAKQYSPTAVE KSWYSWWESSGYFGADAASSKPPFVIVLPPPNVTGALHIGHALTVAIEDSMIRWRRMS GYNTLWVPGVDHAGIATQVVVEKKLMRERNLTRHDIGREEFVSEVLKWKDEYGGTILN QLRRLGASLDWSRECFTMDKPRSKAVTEAFVRLYKQGLIYRDYRLVNWDCTLRTAISD VEVDYLEIKEETMLKVPGYNTTVQFGVLISFAYPLEEGLGEIIVATTRIETMLGDTAI AVHPEDGRYKHLHGRYAIHPFNGRKLKIICDAELVDPTFGTGAVKITPAHDPNDFEVG KRHNLEFINIFTDDGKINNNGGAQFVGIPRFTARVAVIEALKAKGLYKETKKNEMSLG VCSRTNDVVEPMIKPQWFVNCNTMAQAGIDAVRSKRIEIIPQQYEQDWYRWLANIRDW CISRQLWWGHRVPAWYVILEDDQEKILGSANGRWIVARNESEANLEAQQKYPGKKFEL HQDPDVLDTWFSSGLFPLTVLGWPDDTADLKAFYPGSVLETGHDIIFFWVARMVMMGM QLGGDVPFEKVYLHPMIRDAHGRKMSKSLGNVIDPVDVINGISLDGLLKRLKEGNLDP NELNIATEGKKKDFPDGIAECGTDALRFALVSYTSQSDKINLDIKRVVGYRQWCNKLW NAIRFAMGKLGNHYTPPATISVTTMPPICKWILSVLNKAIGKTVTSLEAYKFSDATSA IYSWWQYQLCDVFIEAIKPYFFNDSQEFESARAASRDALWVCLDTGLRLLHPFMPYVT EELWQRLPQPKDSCRKDSIMVSEYPSVVKEWTDDKLENEIDIALDTINKLRSLKPPSD TNERRPAFALCRGQEITATIQCYQSLVVSLSSTSSLKILTENDETPPDCATAVVNKDL SVYLQLQGALNAEVELEKLRKKREEIQKLQHALSQKMEASGYKEKAPQNVQEEDMRKL TSFFEQLEIISEAEKKLDAKTGNN</aaseq>|
| |
| − | DNA = <dnaseqindica>364..444#626..685#804..973#1072..1144#1267..1332#1433..1516#1852..1929#2180..2263#2615..2694#2857..2914#3006..3308#3398..3568#4142..4332#4455..4857#5417..5668#5748..6248#6352..6449#6571..6670#6893..7038#7144..7309#acacgttcgctcttaccccaaaacccttcgccctcttgctgctgcgccgccgccgcacgcgattcctcctgctcccgtcggcggaagctaatcccccaccatcgcctgcctgccgcgtgcgccgatctccatccttgagcagcagcgcgcgggcgtcctgctgcttccgccgcatcctcgctctccggtgagcatccgtcctcttcgtcatcccatccctccctacccacacacctttttctcggattcgcgttaaccctagcttctcttctagcaccggaagcttttcaatttgccttaactttactaatgacagtttatttttgttaatcaaaaagtttggggttgttcaagtgaagcaccatgtccagcgttacccctgctgccgacgcgcagccactcgatgagaaagagctggagcggaagctgaagaaagatcagaaggtatttgatcaaacgctatcttcttaattatattcatttctttggcctagattacttctctgtcaccagctggactcaaaatggtcattgattttcacaatgataaaatccaaggtgttcactactattgcacatttgcacatgacaaaagtcactgatgtgtgaactgttctgcgcacaggcaaaagagaaagaggaaaaaaggcttaaggcgaaggcaaaggaggcggctaggctccaggtttgaacatgattagtgaatttctatgtgactgaatgtaaaaccagatatctactcggtgaaatgctctgtagagatgggtcttcttctattttcgtgctgatttacttttatgtaggcacaagcagcttcagatggacctaagaaaagcgagaagaagcaaaggaagaaagctgtggaggatgagaatcctgaggatttcattgatccagacactcctcatgggcagaagaaatttcttgcatctcaaatggccaagcagtatagcccaactgctgttgagaaatcgtaagatgctaccatgtttttctctatcttataattcatacaataagaaaggcctactgaacttctgcatgcatttgtttcctcccaccttaatgcagatggtattcctggtgggaatcatcaggatattttggggcagatgctgcaagctcaaagccaccatttgttatagtaagtggatcatacttcgaagtttagagagctgcttttcatggaatcaattatgtattttctacatgcagcaaattaccccatatatgttgctgccaaacagctaaattatttcttttcaggttttgccacctccaaatgtcactggagcgcttcatataggccatgcacttacggtggctatagaggtacatcattattcttgtggagacatatccatagtaacattatcgatgttagctaaacattggataatgattttaacgtccctgcatttaagcaatgcaggattccatgatacgctggcggaggatgtcaggttataacactctgtgggttccaggagttgaccatgcaggaatcgctactcaggtctatatcttcgatttgtttcaccatcatctgaaatttatcttacgaaacattcatctgcagataatatagattacttgatatatctttgtcgctattactttctattaaacatactaacaatttggtcagtcgccaatgggcaaacacatggcagcattggttatattaatttacaaaagctccaaatggaatgctgtcctttttctaaaatatcttttctcaaaataaattgtcaacacatgttgctcaattttgttcaccgtatcgttatttcccctctaaaccaataatcatttttgcctcttaaatttctctgatctcatgtatatcaggttgtagtggagaagaagcttatgcgtgaaaggaatttgacaaggcatgacatagggcgtgaagaatttgtatctgaagtaagcattatttttcctgaacaaaattttatgcctgttaactctgtattcttttgattataaatgagcaatttattaccattatcatatgaatatcgaaatggatccatgttgttagacgttatggaaattgtggtgagcatataatattatgcattcaaaggatagtgttctttacttgtttagtttcactccccatgtgtctacctttctcttgtttattctgttttatctatcatattctggacaggttctcaaatggaaagatgaatacgggggtaccatattgaatcaattgcgtaggcttggggcctcacttgattggtcccgcgaggtacatttactactttctgtagttaggagatagtatgagtatacttatgacaatacttgagcaataagttattttatactacctccatcctagaatataagaagttttagagttggacacggttattaagaaaataagtagaattaaatagaaagagcttgtgattggttaagaagtgaaggtaggtgggaaaagtgaatggtggagggttgtgattggttgggaagggaatgttggtggagaagttgttatattttgggacaaatcctgagtgctaaaagttgttatattttgggacggagggagtagttcttattctgaatattaacttcccctctacctttgcaacagtgttttacaatggataaaccaagatcaaaggctgtaactgaagcttttgtcaggttgtacaaacaaggcctgatatataggtcagttccatcaccttattttgttgttagagttgaacatttgttccttctattgattgcaccattatgtttttacctgtttgcttctatacagttgattttggttgttgtttgccatcttagttttatttttcctcttatggatggcatgcttctatacagggattatcgcctcgtgaattgggattgcacccttcgaacagcaatttctgacgtagaggttgttgagactttttattgtgtatgatggtggttgcaattgcacgcataactaaaattgatctgtttgtttgaaatttctgttttgttaggttgattatctagagattaaagaggaaactatgttaaaggttcctggttataatacaactgtacaattcggtgtgttgatctcttttgcatatccacttgaggaaggattgggtgagattattgtcgcaacaacaagaatcgaaacaatgcttggggatacagccattgctgttcaccctgaggatggcagatacaagcatctgcatggtaggtatgcaatccatcccttcaatggccgaaagctcaaaataatctgtgatgctgagttagtggatcccactttcggtactggggctgtcaaggtaggagctgatgctgacttcttgactatctctgtttaatttaatctacttggatcttctgcatacacgtttgcttatcttatatgcagattacacctgcccatgatccaaatgattttgaggttggaaagcgacacaaccttgagttcatcaatatcttcacagatgatggaaaaataaacaacaatggaggtgcacaatttgtaggaattccaagatttactgctcgagttgctgttattgaggcactgaaggcaaaggtactgctagatttgctaaatcatcctttcccagcatcttgtgatccaatctctaaacatttctttggactattgctggtttgttatggatttatgcaccattgcaaaatagtatcagagtgaaaagcacttaccatgaatgttttagggcattcttgcatatttatatttttctataactcagtccaaagaataaatctgatagtgtaagcgataaggagttagtggaatatagcatgaaggtttcctacttttgacattgtcctgtcccccatcctctctcatttttctattagtgggtctcttagcacagtattacttttatgagaaataagatgtcttggtttctgtagacatcagtggttctattaaatctcgaatcctgcattttgttaatgcttttatggtcgggtatctataacaactatgtgtaaaacagcattgaactgtttatgtaaccggataatctcaccaattttgttctgtcagctttctttccatttggtttgctgtgggttttgttcaagtattattgaagcttgattcttaccactttatgttctgcaatataagggcttgtacaaggagacaaagaagaacgaaatgagtttgggtgtttgttcaagaactaatgatgtggtggagcctatgataaaaccccaatggtttgttaattgcaataccatggcacaagcaggtattgatgctgtaaggtccaaaagaattgagattattccacaacagtatgagcaagactggtataggtaatgtctatcaccttctcatttgtcagttgagaattatctcacctattattgcaaatggcatcatatataggcaatggaattagaaggaaaataatccatccattgtcatgcccttacagatggcttgcaaatatacgtgattggtgtatttcgaggcagctttggtggggacatcgcgttcctgcttggtatgttatactagaagatgatcaagagaaaattctgggttctgctaatggccgttggattgttgctagaaacgaaagtgaagcaaacctggaggcacagcaaaagtatcctgggaagaaattcgagttacatcaagatcctgatgtgttggatacatggttttcatctggtctcttcccattaaccgtacttggttggccagatgatacagctgaccttaaagctttctaccctggttcggtgctagaaactggacatgacattatcttcttttgggtagcacggatggtgatgatggggatgcaacttggtggcgatgtgccatttgagaaggtaatggcaattgcatggatgtgcttcctgtgccattaaaactgtattataacattttagcagttcaatctatacatttcatccagtttttacactattgtctttcatacaacagtataattctgatcgaaattcaaacatgaaaaaatctatcttcaaattgctagctgtggatgttataatgaaggagaagtctatttgagactacttcgttcgtgagcatcattattttctgctctgccatttgtcttcaataggtcacactaatttcatctgaatgtactctagtagcttgttaattttggacatatattacatttttgtcaacatgctacttcgactaggcacaatacatggttgattgggaactatcctcagctgaacacacaagtttaccttttatttcagattttaaaatctattatttttcttagtttgatttttgaattacttcgtaacctaagacgtgtttaactgcaactagaagtattacttacactggtaagtgaggcgattctagctgaacacgcttaaattggggctctgctctcttgctcaggtttatttgcaccctatgatacgtgatgctcatggacgcaaaatgtccaagtcgcttggtaatgtcattgatcccgttgatgtgataaatggcatttcactggatggtctcctcaaacgtttgaaagaaggcaatctagatccaaatgaattgaacattgcaacagaagggaagaagaaggattttcctgatggcattgctgaatgtggtaccgatgctctccgttttgcactggtttcttacacttcgcaggttgtaattacacccatttcagtttctgttgtattatgcttgcaattcatctcctatggatttctctcttggttcacagtctgacaagataaacctggatatcaaacgagttgttggatatcgacagtggtgcaataaattatggaatgccattcgttttgcaatgggcaagcttggcaatcattacactccccctgcaactatttctgtaactacaatgccacccatatgcaaatggatattgtcagtacttaataaagctattggcaaaactgtcacctcgttagaagcatacaaattttctgatgctacatctgctatatactcgtggtggcagtaccaactatgtgatgtgttcatagaagctataaagccttacttcttcaatgactctcaagagtttgaatcagcaagagctgcctctagagatgccttatgggtttgcttagacactggtttgcgcttgctccacccattcatgccttatgttacagaagagctctggcagcgtcttcctcagcctaaagattcttgtcggaaagattccattatggtatcagagtacccatctgttgttaaggtattatcttaaagaagacataatttgtgtttggaaatataattgaaccaatatataagatagcacacatttaccaatggagacatatctttctttatgacaggaatggacggatgataaacttgaaaatgagatagatattgccttagatactatcaacaaactaagatctctgaagccaccatctgatacaaatgagaggtgcgtgtataatcatctatcttaatttgtgctattcctgtaatatacatgatgtgttgtcagattcattttgttcaatacgaaagcgtaatatatctcttgcttatttttccacaaacagacgacctgcttttgcactttgccgaggccaagagattactgccaccattcagtgttatcagtctctagttgtgtctctttcttccacatcatctctaaaggttctgccttaaacttctgtactattatgtatgcatgcatttctctattagcaaaatatttagattgaaatttatactgaaacctgggatggagtattattagtttagtacctcataaaacttatgtttcttaccatccatgcgtttgaaaattccccaaaagtcctgcctgagttgaaagatcttgacagaagaactgatctgatatttgaaaccattcagatcctgacagagaatgatgaaacgccacctgactgtgcaacagctgttgtaaacaaagatttgtctgtataccttcaactccaaggagctctcaatgcagaagttgagcttgaaaagctgaggaaaaagagagaagaaattcaaaagtaagcgtacttatgttatctcaaaatatcttgaatgaagatttgcctatgtttcactgttcccctgcgctagaaggatataacttactattaccatgcacgcaggctccaacacgcactgtcacagaaaatggaagcttctggttacaaagagaaggctccacagaatgtccaggaggaggacatgagaaaactcactagtttttttgaacagctagagattatcagtgaagctgaaaagaagctagatgcaaaaactggcaataattgacccagaaatctctgatgtgattttgaagatgcacatttgttgaagtttatctcaaattttttgcatggttaccttaatcatacctgaatgcccaggtactcatttttatattttgtagcttgaagagtatattcacagcattatacttttgtagtttttggttgtccaatcttccgtttgaaaatattttttgtggtgttgatttttctt</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001057508.1 RefSeq:Os03g0694900]|
| |
| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 3]]
| |
| − | [[Category:Chromosome 3]]
| |
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Annotated Information
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Expression
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Structured Information
